##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138928_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11480989 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71705373117246 33.0 33.0 33.0 33.0 33.0 2 32.711492450693925 33.0 33.0 33.0 33.0 33.0 3 32.71140482758062 33.0 33.0 33.0 33.0 33.0 4 36.640357202676526 37.0 37.0 37.0 37.0 37.0 5 36.65652096696547 37.0 37.0 37.0 37.0 37.0 6 36.58391197831476 37.0 37.0 37.0 37.0 37.0 7 36.62954088711347 37.0 37.0 37.0 37.0 37.0 8 36.6334558808479 37.0 37.0 37.0 37.0 37.0 9 36.64086935367676 37.0 37.0 37.0 37.0 37.0 10-11 36.601843403908845 37.0 37.0 37.0 37.0 37.0 12-13 36.57372282997571 37.0 37.0 37.0 37.0 37.0 14-15 38.68704155190811 40.0 37.0 40.0 37.0 40.0 16-17 38.6364486108296 40.0 37.0 40.0 37.0 40.0 18-19 38.66506343660812 40.0 37.0 40.0 37.0 40.0 20-21 38.68779295403239 40.0 37.0 40.0 37.0 40.0 22-23 38.54705006969003 40.0 37.0 40.0 37.0 40.0 24-25 38.69307033127559 40.0 37.0 40.0 37.0 40.0 26-27 38.48680052878677 40.0 37.0 40.0 37.0 40.0 28-29 38.47882379640687 40.0 37.0 40.0 37.0 40.0 30-31 38.460610489448285 40.0 37.0 40.0 37.0 40.0 32-33 38.459691472987515 40.0 37.0 40.0 37.0 40.0 34-35 38.37455910680106 40.0 37.0 40.0 37.0 40.0 36-37 33.45719031084542 40.0 37.0 40.0 8.5 40.0 38-39 37.328895256924014 40.0 37.0 40.0 33.0 40.0 40-41 37.88813713358289 40.0 37.0 40.0 35.0 40.0 42-43 38.093908987464005 40.0 37.0 40.0 35.0 40.0 44-45 38.09914255830803 40.0 37.0 40.0 35.0 40.0 46-47 37.99441387947846 40.0 37.0 40.0 33.0 40.0 48-49 37.97105518690489 40.0 37.0 40.0 33.0 40.0 50-51 37.927994810861705 40.0 37.0 40.0 33.0 40.0 52-53 37.855152991475286 40.0 37.0 40.0 33.0 40.0 54-55 37.769212823962896 40.0 37.0 40.0 33.0 40.0 56-57 37.68945193775009 40.0 37.0 40.0 33.0 40.0 58-59 37.542645292311875 40.0 37.0 40.0 33.0 40.0 60-61 37.35278644907762 37.0 37.0 40.0 33.0 40.0 62-63 37.12560807730364 37.0 37.0 40.0 33.0 40.0 64-65 36.90967657826705 37.0 37.0 40.0 33.0 40.0 66-67 36.633808814224324 37.0 37.0 40.0 33.0 40.0 68-69 36.35576982256279 37.0 37.0 40.0 33.0 40.0 70-71 36.092294901335734 37.0 37.0 38.5 33.0 40.0 72-73 35.83130917536165 37.0 37.0 37.0 33.0 40.0 74-75 35.54808339945174 37.0 33.0 37.0 33.0 40.0 76-77 33.70534293019947 35.0 33.0 37.0 27.0 37.0 78-79 35.1828290646913 37.0 33.0 37.0 33.0 37.0 80-81 35.21691116403191 37.0 33.0 37.0 33.0 37.0 82-83 35.290059291789845 37.0 33.0 37.0 33.0 37.0 84-85 35.13671536674205 37.0 33.0 37.0 33.0 37.0 86-87 35.06840537111138 37.0 33.0 37.0 33.0 37.0 88-89 34.98302468806557 37.0 33.0 37.0 33.0 37.0 90-91 34.847099535290226 37.0 33.0 37.0 33.0 37.0 92-93 34.82462672416683 37.0 33.0 37.0 33.0 37.0 94-95 34.78425223936718 37.0 33.0 37.0 33.0 37.0 96-97 34.759963526342645 37.0 33.0 37.0 33.0 37.0 98-99 34.71528948750787 37.0 33.0 37.0 33.0 37.0 100 34.65591559353328 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 6.0 20 67.0 21 307.0 22 1273.0 23 3621.0 24 8766.0 25 17707.0 26 31800.0 27 51289.0 28 76645.0 29 108525.0 30 150295.0 31 200431.0 32 267638.0 33 364276.0 34 514575.0 35 802562.0 36 1564059.0 37 3606656.0 38 3591658.0 39 118833.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.684196370190755 20.06538809505 14.426387831222554 23.82402770353669 2 14.469981636599424 21.088061315971995 41.7107184755599 22.73123857186868 3 17.95781588460074 26.315506620768453 30.563489355719874 25.16318813891093 4 12.54922894900016 18.13704677353403 38.9804073791897 30.333316898276113 5 13.411847838272697 37.716396381611474 35.48495167691543 13.386804103200397 6 29.772165098320365 38.10889462571561 18.73298545970212 13.385954816261908 7 26.389886794595828 32.81860125464801 23.257891807055994 17.533620143700162 8 24.48105298245648 36.730145808867164 21.05403114661986 17.7347700620565 9 25.690138715401613 17.02735713796085 21.139206735586978 36.14329741105056 10-11 24.299579069364146 26.73912935549368 28.865705733190755 20.095585841951422 12-13 25.18718988407706 24.34620397249749 28.93978471715285 21.526821426272598 14-15 22.36562111504505 25.536711166607684 26.619588260209987 25.478079458137277 16-17 21.727170019934693 28.796848424817757 27.19212168916807 22.28385986607948 18-19 21.83437332794239 27.930285448405183 29.02346653236929 21.21187469128313 20-21 22.70473658868339 27.0465297046744 28.815468707973135 21.433264998669078 22-23 22.629424889524618 26.901389293153123 28.60898690610704 21.86019891121521 24-25 22.356128503681376 27.136534834756425 28.59566898123282 21.911667680329376 26-27 22.18676685511572 27.075299519441188 28.683039406659443 22.05489421878365 28-29 22.135435629540318 27.182997107153973 28.711486983065477 21.970080280240232 30-31 22.278472035751882 27.083228438081353 28.657537137067706 21.980762389099063 32-33 22.134473296423778 27.258937883881206 28.594634825494055 22.01195399420096 34-35 22.32583855187539 27.138672003350617 28.54558422407063 21.989905220703363 36-37 22.596630073407063 27.070852290489576 28.31660262988421 22.015915006219156 38-39 22.239317227538837 27.342272739859542 28.51090775626502 21.907502276336597 40-41 22.425218840423312 27.19295321252055 28.30985139586304 22.0719765511931 42-43 22.27164100166697 27.44411891646553 28.10947318266519 22.174766899202314 44-45 22.44282701236763 27.39491546174951 28.040609366203554 22.1216481596793 46-47 22.453488498082617 27.402384203668063 27.75505553988722 22.389071758362107 48-49 22.343996463684192 27.702773442407207 27.551388745637475 22.401841348271127 50-51 22.411394212762872 27.57771222721343 27.69646445758585 22.314429102437845 52-53 22.608662826042902 27.5876073299945 27.403512144283937 22.400217699678663 54-55 22.58878271918252 27.468108450429625 27.48130209215726 22.461806738230596 56-57 22.609417087603344 27.566673008025983 27.40816563004535 22.415744274325323 58-59 22.43401696425231 27.71494414827317 27.495511870469453 22.355527017005066 60-61 22.560587881766143 27.635972719837465 27.464497358021596 22.3389420403748 62-63 22.595565130640985 27.753921648235398 27.30613571397446 22.34437750714916 64-65 22.5542928508602 27.63646480176756 27.31756130114794 22.491681046224304 66-67 22.72315817436353 27.645568487873767 27.08273848978961 22.548534847973094 68-69 22.36796442369291 27.669470875140995 27.347787681919833 22.61477701924626 70-71 22.469094422374685 27.483717500081617 27.33845520436864 22.708732873175062 72-73 22.560174971639235 27.612851672495992 27.15769085226948 22.669282503595294 74-75 22.42797787121009 27.722328676595854 27.23981179943288 22.60988165276118 76-77 22.592871245395067 27.65782152510217 27.163395160189978 22.585912069312787 78-79 22.45900061733261 27.605732286495567 27.16294202499429 22.77232507117753 80-81 22.682874073657835 27.616209045925416 26.992405192474234 22.70851168794251 82-83 22.473565350472814 27.704559193023925 27.24076881676804 22.58110663973522 84-85 22.649030400378045 27.61179847552327 27.145191593701647 22.59397953039704 86-87 22.520267199427586 27.656884158741672 27.175308733469848 22.64753990836089 88-89 22.61350358305686 27.6160330235517 27.139473247032335 22.630990146359103 90-91 22.645288311423126 27.564695160747622 27.12343642286163 22.666580104967622 92-93 22.726939518963537 27.525422784646615 27.232533926973467 22.51510376941638 94-95 22.36473834869055 27.710164225748347 27.289805501046814 22.63529192451429 96-97 22.486218119266653 27.73563102467376 27.378557982262258 22.39959287379733 98-99 23.709249398573668 29.698219227986282 27.365521219578287 19.227010153861755 100 22.619959875885552 30.72632465709262 21.230352821386735 25.423362645635088 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3253.0 1 2770.0 2 3139.0 3 4210.5 4 5465.5 5 8663.0 6 11441.5 7 13375.0 8 14983.0 9 15364.0 10 14454.5 11 13405.0 12 14519.5 13 18689.0 14 28494.0 15 41846.5 16 53689.5 17 61896.0 18 64111.0 19 60547.0 20 54663.0 21 49033.0 22 47345.5 23 51166.0 24 59935.5 25 74936.5 26 95631.0 27 115717.5 28 133312.0 29 152995.5 30 173745.5 31 199817.0 32 230097.0 33 260687.0 34 286410.5 35 306312.5 36 332808.0 37 359724.0 38 375988.0 39 382752.0 40 392662.5 41 409929.5 42 423566.5 43 437431.0 44 453769.5 45 459063.5 46 457736.5 47 461363.0 48 465952.5 49 467741.5 50 459564.0 51 443915.5 52 427139.0 53 407692.5 54 386396.0 55 361101.5 56 334522.0 57 307651.0 58 278589.0 59 245095.0 60 205632.5 61 167034.5 62 133040.0 63 102696.0 64 77110.5 65 57874.5 66 43480.5 67 32660.0 68 24491.5 69 17647.5 70 12540.0 71 9009.5 72 6183.5 73 4014.0 74 2575.0 75 1654.0 76 1096.5 77 704.5 78 476.0 79 338.0 80 233.0 81 158.0 82 117.5 83 83.5 84 59.5 85 48.5 86 39.0 87 34.0 88 25.0 89 16.5 90 10.5 91 6.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.001933631327405679 4 0.012742804648623913 5 0.009337174698103098 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0015725246403938892 26-27 0.03627426007263218 28-29 0.08532727832529763 30-31 0.08302333750762528 32-33 0.03708614041761223 34-35 0.0013405785323609086 36-37 7.228422945379774 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.331031563985581E-5 56-57 5.1644804873015996E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.010722795849903433 74-75 0.03222387746529527 76-77 0.004552951665367696 78-79 0.0 80-81 0.0 82-83 0.0032206627717492843 84-85 0.03864585553169678 86-87 0.04232491343849433 88-89 0.01193682647649217 90-91 3.793395222034467E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 122.0 20-21 591.0 22-23 1160.0 24-25 2986.0 26-27 4537.0 28-29 7910.0 30-31 18517.0 32-33 24464.0 34-35 38273.0 36-37 47051.0 38-39 56791.0 40-41 62360.0 42-43 73968.0 44-45 90083.0 46-47 90264.0 48-49 79609.0 50-51 70641.0 52-53 68864.0 54-55 73602.0 56-57 77659.0 58-59 77984.0 60-61 76378.0 62-63 74597.0 64-65 79407.0 66-67 84569.0 68-69 84629.0 70-71 82987.0 72-73 79096.0 74-75 81259.0 76-77 81334.0 78-79 86396.0 80-81 87474.0 82-83 84867.0 84-85 85632.0 86-87 92255.0 88-89 100023.0 90-91 105843.0 92-93 114022.0 94-95 138127.0 96-97 401449.0 98-99 716838.0 100-101 7776371.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.91658633996013 #Duplication Level Percentage of deduplicated Percentage of total 1 91.02617096955619 79.11684048271404 2 6.355594310336003 11.048131232321571 3 1.451278508630304 3.7842052139608318 4 0.5355221283971675 1.861830212391665 5 0.25366871600628577 1.102400942825358 6 0.13543391739239374 0.7062872264637013 7 0.07104315274595499 0.4322379823654741 8 0.04382278032585808 0.3047141175879641 9 0.029680615064930166 0.23217639677227125 >10 0.09588247533071294 1.2437973535089828 >50 0.001656347148279599 0.0987491524419831 >100 2.1493200741423034E-4 0.0357507951214705 >500 1.5573539144248145E-5 0.013414164699129445 >1k 1.5573519321093468E-5 0.019464726825585775 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.710051024349906E-6 2 0.0 4.3550255121749526E-5 0.0 0.0 8.710051024349906E-6 3 0.0 4.3550255121749526E-5 0.0 0.0 8.710051024349906E-6 4 0.0 7.839045921914916E-5 0.0 0.0 8.710051024349906E-6 5 0.0 7.839045921914916E-5 0.0 0.0 8.710051024349906E-6 6 4.3550255121749526E-5 7.839045921914916E-5 0.0 0.0 8.710051024349906E-6 7 5.2260306146099436E-5 7.839045921914916E-5 0.0 0.0 8.710051024349906E-6 8 6.097035717044934E-5 7.839045921914916E-5 0.0 0.0 8.710051024349906E-6 9 9.581056126784896E-5 1.1323066331654878E-4 0.0 0.0 2.6130153073049718E-5 10-11 9.581056126784896E-5 1.1323066331654878E-4 0.0 2.1775127560874767E-5 2.6130153073049718E-5 12-13 9.581056126784896E-5 1.2194071434089868E-4 0.0 3.919522960957458E-5 2.6130153073049718E-5 14-15 1.1323066331654878E-4 1.4371584190177344E-4 0.0 5.2260306146099436E-5 4.355025512174953E-5 16-17 1.3065076536524859E-4 1.480708674139484E-4 0.0 5.2260306146099436E-5 5.2260306146099436E-5 18-19 1.5242589292612337E-4 1.6984599497482316E-4 0.0 5.2260306146099436E-5 6.968040819479925E-5 20-21 1.6113594395047326E-4 1.8291107151134802E-4 0.0 5.2260306146099436E-5 6.968040819479925E-5 22-23 1.654909694626482E-4 2.0468619907222278E-4 0.0 6.532538268262429E-5 9.145553575567401E-5 24-25 1.6984599497482314E-4 2.3081635214527253E-4 0.0 1.0887563780437383E-4 1.2194071434089868E-4 26-27 1.742010204869981E-4 2.525914797061473E-4 0.0 1.3500579087742355E-4 1.3065076536524859E-4 28-29 1.742010204869981E-4 2.6130153073049717E-4 0.0 2.395264031696224E-4 1.3065076536524859E-4 30-31 1.742010204869981E-4 3.048517858522467E-4 0.0 6.009935206801435E-4 1.3500579087742355E-4 32-33 1.7855604599917307E-4 3.048517858522467E-4 0.0 0.00138054308735946 1.393608163895985E-4 34-35 2.0468619907222278E-4 3.3969198994964633E-4 0.0 0.002591240179744097 1.393608163895985E-4 36-37 2.2646132663309756E-4 3.7453219404704597E-4 0.0 0.00463374714495415 1.4371584190177344E-4 38-39 2.395264031696224E-4 3.7453219404704597E-4 0.0 0.007782430590256641 1.480708674139484E-4 40-41 2.4388142868179735E-4 4.3985757672967025E-4 0.0 0.011353551510240102 1.480708674139484E-4 42-43 2.4388142868179735E-4 4.485676277540202E-4 0.0 0.01480708674139484 1.5678091843829831E-4 44-45 2.4388142868179735E-4 4.877628573635947E-4 0.0 0.01922743763625242 1.6984599497482314E-4 46-47 2.4388142868179735E-4 5.400231635096941E-4 0.0 0.023930865189401365 1.742010204869981E-4 48-49 2.4823645419397235E-4 5.487332145340441E-4 0.0 0.028255405522991096 1.9162112253569792E-4 50-51 2.525914797061473E-4 6.097035717044934E-4 0.0 0.032784632055653046 2.0033117356004783E-4 52-53 2.525914797061473E-4 6.227686482410183E-4 0.0 0.037270308333193246 2.1775127560874765E-4 54-55 2.5694650521832223E-4 6.314786992653683E-4 0.0 0.041725499432148226 2.3517137765744744E-4 56-57 2.6130153073049717E-4 6.40188750289718E-4 0.0 0.04669893856705202 2.395264031696224E-4 58-59 2.6130153073049717E-4 6.532538268262429E-4 0.0 0.05163753749785842 2.4388142868179735E-4 60-61 2.74366607267022E-4 6.750289543871178E-4 0.0 0.05635403012754389 2.525914797061473E-4 62-63 2.961417348278968E-4 6.880940309236425E-4 0.0 0.06099213229801022 2.6130153073049717E-4 64-65 2.961417348278968E-4 7.839045921914915E-4 0.0 0.06586976087164616 2.6130153073049717E-4 66-67 3.222718879009465E-4 7.839045921914915E-4 0.0 0.0707299693432334 2.700115817548471E-4 68-69 3.222718879009465E-4 7.926146432158415E-4 0.0 0.0759124497027216 2.8307665829137193E-4 70-71 3.2662691341312145E-4 7.926146432158415E-4 0.0 0.08045038628640791 2.874316838035469E-4 72-73 3.3969198994964633E-4 7.926146432158415E-4 0.0 0.08381246598180697 3.222718879009465E-4 74-75 3.3969198994964633E-4 7.926146432158415E-4 0.0 0.08649516169730673 3.222718879009465E-4 76-77 3.4404701546182127E-4 8.013246942401913E-4 0.0 0.08914301720870911 3.222718879009465E-4 78-79 3.484020409739962E-4 8.013246942401913E-4 0.0 0.09073260152065296 3.222718879009465E-4 80-81 3.484020409739962E-4 8.013246942401913E-4 0.0 0.09126826965865048 3.3969198994964633E-4 82-83 3.5711209199834615E-4 8.056797197523663E-4 0.0 0.09169506215884363 3.5711209199834615E-4 84-85 3.875972705835708E-4 8.100347452645412E-4 0.0 0.09195636368957413 3.5711209199834615E-4 86-87 3.9195229609574573E-4 8.36164898337591E-4 0.0 0.0920652393273785 3.6582214302269603E-4 88 4.0937239814444555E-4 8.710051024349906E-4 0.0 0.0920826594294272 3.7453219404704597E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16070 0.0 47.142334 1 GTATCAA 29845 0.0 35.76018 1 TCAACGC 32205 0.0 32.132317 4 ATCAACG 32640 0.0 31.757048 3 CAACGCA 32990 0.0 31.428541 5 AACGCAG 34015 0.0 30.528845 6 TATCAAC 34695 0.0 30.011307 2 ACGCAGA 39000 0.0 26.593826 7 CGCAGAG 40170 0.0 25.851099 8 GCAGAGT 46735 0.0 22.164968 9 GTACATG 34875 0.0 20.744148 1 GAGTACT 26545 0.0 20.652433 12-13 TACATGG 34615 0.0 20.37007 2 ACATGGG 34660 0.0 19.949797 3 CAGAGTA 46225 0.0 19.268124 10-11 AGAGTAC 42975 0.0 18.884468 10-11 GTACTTT 29615 0.0 18.541054 14-15 GTGGTAT 7365 0.0 18.244074 1 CATGGGG 28365 0.0 17.534376 4 AGTACTT 30770 0.0 16.382187 12-13 >>END_MODULE