##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138927_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8213920 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71843638603736 33.0 33.0 33.0 33.0 33.0 2 32.717192034984514 33.0 33.0 33.0 33.0 33.0 3 32.717166833862514 33.0 33.0 33.0 33.0 33.0 4 36.64661903208212 37.0 37.0 37.0 37.0 37.0 5 36.6629774821279 37.0 37.0 37.0 37.0 37.0 6 36.58820258780217 37.0 37.0 37.0 37.0 37.0 7 36.63400787930732 37.0 37.0 37.0 37.0 37.0 8 36.64040993825116 37.0 37.0 37.0 37.0 37.0 9 36.64864291349319 37.0 37.0 37.0 37.0 37.0 10-11 36.60946113426963 37.0 37.0 37.0 37.0 37.0 12-13 36.582628878781385 37.0 37.0 37.0 37.0 37.0 14-15 38.699953980559826 40.0 37.0 40.0 37.0 40.0 16-17 38.64824505230146 40.0 37.0 40.0 37.0 40.0 18-19 38.67773407824766 40.0 37.0 40.0 37.0 40.0 20-21 38.69882881718006 40.0 37.0 40.0 37.0 40.0 22-23 38.554114627742024 40.0 37.0 40.0 37.0 40.0 24-25 38.70261616186785 40.0 37.0 40.0 37.0 40.0 26-27 38.49147931682358 40.0 37.0 40.0 37.0 40.0 28-29 38.47851590517445 40.0 37.0 40.0 37.0 40.0 30-31 38.45946146122509 40.0 37.0 40.0 37.0 40.0 32-33 38.46023322525058 40.0 37.0 40.0 37.0 40.0 34-35 38.37643768513048 40.0 37.0 40.0 37.0 40.0 36-37 33.443814070173794 40.0 37.0 40.0 8.5 40.0 38-39 37.31635787523828 40.0 37.0 40.0 33.0 40.0 40-41 37.882433907580136 40.0 37.0 40.0 35.0 40.0 42-43 38.09788093195614 40.0 37.0 40.0 35.0 40.0 44-45 38.10894444316834 40.0 37.0 40.0 37.0 40.0 46-47 38.009270190802226 40.0 37.0 40.0 33.0 40.0 48-49 37.9918498868087 40.0 37.0 40.0 33.0 40.0 50-51 37.9355034020089 40.0 37.0 40.0 33.0 40.0 52-53 37.87571127831198 40.0 37.0 40.0 33.0 40.0 54-55 37.796386174324674 40.0 37.0 40.0 33.0 40.0 56-57 37.71922833873437 40.0 37.0 40.0 33.0 40.0 58-59 37.58809384007293 40.0 37.0 40.0 33.0 40.0 60-61 37.39688618250638 38.5 37.0 40.0 33.0 40.0 62-63 37.18464604163579 37.0 37.0 40.0 33.0 40.0 64-65 36.98875731551982 37.0 37.0 40.0 33.0 40.0 66-67 36.72900293453094 37.0 37.0 40.0 33.0 40.0 68-69 36.460862139580286 37.0 37.0 40.0 33.0 40.0 70-71 36.19707833016629 37.0 37.0 38.5 33.0 40.0 72-73 35.944374262359645 37.0 37.0 37.0 33.0 40.0 74-75 35.66353122669989 37.0 35.0 37.0 33.0 40.0 76-77 33.82613858429083 35.0 33.0 37.0 27.0 37.0 78-79 35.2756788098701 37.0 33.0 37.0 33.0 37.0 80-81 35.29588136927222 37.0 33.0 37.0 33.0 37.0 82-83 35.363067027644746 37.0 33.0 37.0 33.0 37.0 84-85 35.20610605575018 37.0 33.0 37.0 33.0 37.0 86-87 35.13560108010164 37.0 33.0 37.0 33.0 37.0 88-89 35.048425423352484 37.0 33.0 37.0 33.0 37.0 90-91 34.91353566097159 37.0 33.0 37.0 33.0 37.0 92-93 34.89571926829393 37.0 33.0 37.0 33.0 37.0 94-95 34.856605477675686 37.0 33.0 37.0 33.0 37.0 96-97 34.83253656561082 37.0 33.0 37.0 33.0 37.0 98-99 34.7896640896695 37.0 33.0 37.0 33.0 37.0 100 34.73640212244679 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 9.0 20 47.0 21 264.0 22 927.0 23 2669.0 24 6454.0 25 12677.0 26 22767.0 27 35972.0 28 54130.0 29 76450.0 30 104787.0 31 140749.0 32 189016.0 33 257043.0 34 361387.0 35 561811.0 36 1083338.0 37 2531809.0 38 2676271.0 39 95340.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.0271831232834 20.464613728889493 14.581673549291935 23.926529598535172 2 14.152852718312328 21.04337514852835 42.25836141574303 22.54541071741629 3 17.592279093924322 26.672807588153084 30.983201219515905 24.751712098406685 4 12.163030122897348 18.639526718633583 39.17424397485434 30.023199183614725 5 13.055898434047075 37.91549547518089 35.81314638751095 13.21545970326109 6 29.129027309737616 38.51852708572764 19.01999289011824 13.332452714416505 7 25.748570718974616 33.02358678925531 23.436824317743536 17.79101817402653 8 24.049832479498217 36.954365272610396 21.419212751037264 17.57658949685412 9 25.22414389231938 17.040730856886846 21.31678906052165 36.41833619027212 10-11 23.791301838829693 26.875663507801388 29.235121598457255 20.09791305491166 12-13 24.83720318678536 24.45211299842219 29.12659241872334 21.584091396069113 14-15 22.018640308159807 25.76290613982118 26.70978655745369 25.50866699456532 16-17 21.572641321074467 29.096235415002823 27.270347166760818 22.06077609716189 18-19 21.692297952743637 28.044776428307067 29.0178380115706 21.245087607378693 20-21 22.3750764572161 27.23791975985616 28.933346352162907 21.453657430764824 22-23 22.106277696966316 27.359400741658053 28.794428834784508 21.73989272659112 24-25 22.04329713182806 27.452631584074943 28.80426039607445 21.699810888022547 26-27 21.97493583152443 27.506534140675576 28.818584104497507 21.699945923302487 28-29 21.746500932688182 27.466524926118346 28.910314643890594 21.876659497302875 30-31 21.990438273668488 27.392366784276444 28.913312989096205 21.703881952958856 32-33 21.635042548927814 27.391548559427708 29.079866980268953 21.893541911375525 34-35 21.81853646272465 27.462233767303047 28.852885351633823 21.86634441833848 36-37 22.05400553648277 27.521509347596584 28.692255401677443 21.732229714243207 38-39 21.838532783933793 27.488886917293755 28.849709751265152 21.8228705475073 40-41 22.007554747754277 27.391073563924483 28.768707325776845 21.832664362544396 42-43 22.025295631054096 27.4655933376058 28.644854762984174 21.864256268355934 44-45 21.938882303542435 27.699318958190915 28.436599989823918 21.92519874844273 46-47 22.218786484422935 27.516143662397685 27.979085334325944 22.285984518853436 48-49 22.065969501148984 27.668783971670823 28.000864950340613 22.264381576839572 50-51 21.9916145087701 27.829293356472697 28.033112667832928 22.145979466924278 52-53 22.12480830387424 27.82884150782995 28.02525063380999 22.021099554485822 54-55 22.093410700530843 27.759704676988328 27.875471423226088 22.27141319925474 56-57 22.257096195040084 27.94435978360994 27.632348332587764 22.166195688762212 58-59 21.995928849245615 28.146079523890222 27.93962657289166 21.9183650539725 60-61 22.248237646400558 28.244255688238244 27.60859693592832 21.898909729432873 62-63 22.122824616849762 28.42018017861757 27.507301471324556 21.949693733208107 64-65 22.116702066342235 28.24489295202386 27.550361369361248 22.088043612272656 66-67 22.235314529403542 28.108922593061443 27.489233611025316 22.16652926650971 68-69 22.167353471581567 27.985048443706432 27.625712223834743 22.221885860877258 70-71 22.178237402603617 27.82776596575757 27.647601573403318 22.346395058235487 72-73 22.233667423881776 27.89360364457253 27.533257292322304 22.339471639223387 74-75 22.122070335299465 28.01498740498235 27.55222237929888 22.310719880419306 76-77 22.249930060415956 27.879102514459834 27.56099114464488 22.309976280479322 78-79 22.188948813082053 27.896121684361606 27.460995543024296 22.453933959532044 80-81 22.3126441803276 27.930558819321938 27.43117865912341 22.325618341227052 82-83 22.219675859588612 27.94371918079174 27.603836703431078 22.23276825618857 84-85 22.34077902732159 27.879428666603022 27.508687534547477 22.27110477152791 86-87 22.205120508522143 27.923200398850394 27.571298521863696 22.300380570763764 88-89 22.24674905755733 27.877983133291913 27.51621273705637 22.35905507209439 90-91 22.26925368779233 27.93633470546977 27.5013783121167 22.293033294621207 92-93 22.2753519369461 27.901535561852995 27.563146171015756 22.259966330185144 94-95 22.12649061859645 27.977759542430867 27.58382685022313 22.31192298874955 96-97 22.205759189780526 28.06672452762629 27.664716736693627 22.062799545899555 98-99 23.350167365524673 29.955609750579637 27.829502438644553 18.864720445251134 100 22.237642555172027 31.016640551487924 21.66959838706093 25.076118506279123 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2077.0 1 1761.0 2 2149.5 3 3058.5 4 4135.5 5 6554.5 6 8602.5 7 10012.0 8 11084.5 9 11190.5 10 10442.0 11 9630.5 12 10334.5 13 13401.0 14 20560.5 15 30272.0 16 38819.0 17 44762.5 18 46770.0 19 45080.5 20 41753.0 21 38559.5 22 37479.0 23 40098.5 24 46581.5 25 57115.0 26 71510.5 27 87619.0 28 104693.5 29 123726.5 30 142747.0 31 161819.5 32 182540.5 33 202050.0 34 219305.0 35 234083.0 36 250075.0 37 266849.5 38 279104.0 39 287743.5 40 296010.5 41 304439.0 42 309959.5 43 315708.0 44 322601.0 45 327290.5 46 329523.5 47 331953.5 48 342908.5 49 345124.5 50 333146.5 51 322479.5 52 309080.5 53 289635.5 54 267612.5 55 245116.5 56 224380.5 57 203347.5 58 179890.5 59 155282.5 60 129326.0 61 104999.5 62 83270.5 63 64152.5 64 47977.5 65 36144.0 66 27786.0 67 21354.5 68 16006.5 69 11526.0 70 8258.0 71 5977.0 72 4110.5 73 2821.5 74 1923.5 75 1280.0 76 847.5 77 522.0 78 334.0 79 234.5 80 161.0 81 109.5 82 77.0 83 56.5 84 43.0 85 34.0 86 27.5 87 19.5 88 11.0 89 6.0 90 5.0 91 5.0 92 4.5 93 3.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.00205748290706508 4 0.013769308685743225 5 0.009423028225256636 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0016805341175825882 26-27 0.0367769033737723 28-29 0.08536173589500604 30-31 0.08305305367584179 32-33 0.037393073927616566 34-35 0.0013477202056890578 36-37 7.248204812216316 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.617971866358034E-5 56-57 4.619261343157139E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011110267093660618 74-75 0.03320423914612271 76-77 0.0044482051997496875 78-79 0.0 80-81 0.0 82-83 0.0033119770223054225 84-85 0.03969953389778734 86-87 0.043514450786548864 88-89 0.01229080393942064 90-91 1.5471439915309338E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 111.0 20-21 410.0 22-23 950.0 24-25 2672.0 26-27 3497.0 28-29 5929.0 30-31 14186.0 32-33 18456.0 34-35 28844.0 36-37 35542.0 38-39 43599.0 40-41 47435.0 42-43 55710.0 44-45 67708.0 46-47 67242.0 48-49 60246.0 50-51 54305.0 52-53 53189.0 54-55 60215.0 56-57 65476.0 58-59 65836.0 60-61 66648.0 62-63 67102.0 64-65 68959.0 66-67 75138.0 68-69 64421.0 70-71 62108.0 72-73 59251.0 74-75 59928.0 76-77 60146.0 78-79 64251.0 80-81 65475.0 82-83 63072.0 84-85 63544.0 86-87 67263.0 88-89 72495.0 90-91 76769.0 92-93 82082.0 94-95 98717.0 96-97 278310.0 98-99 502212.0 100-101 5444471.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.45558360276877 #Duplication Level Percentage of deduplicated Percentage of total 1 91.26232779745362 79.81400138473494 2 6.2516138660542415 10.9347707822987 3 1.401644663627537 3.6774495618375833 4 0.5181635860027685 1.8126519526230234 5 0.22107568998158672 0.9667151743862222 6 0.11924373006574787 0.6257118002322603 7 0.060921592362488654 0.3729553389849997 8 0.0418192564677588 0.29258619841773664 9 0.029218446430077538 0.22997846560577997 >10 0.09282632196551137 1.1902723382329263 >50 9.908767560135412E-4 0.05642377244085188 >100 1.5417283261439169E-4 0.026483230204920175 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2174455071391005E-5 2 0.0 2.434891014278201E-5 0.0 0.0 1.2174455071391005E-5 3 0.0 2.434891014278201E-5 0.0 0.0 1.2174455071391005E-5 4 0.0 8.522118549973703E-5 0.0 0.0 2.434891014278201E-5 5 0.0 8.522118549973703E-5 0.0 1.2174455071391005E-5 2.434891014278201E-5 6 1.9479128114225608E-4 8.522118549973703E-5 0.0 3.6523365214173013E-5 2.434891014278201E-5 7 1.9479128114225608E-4 8.522118549973703E-5 0.0 3.6523365214173013E-5 3.6523365214173013E-5 8 1.9479128114225608E-4 1.0957009564251905E-4 0.0 3.6523365214173013E-5 3.6523365214173013E-5 9 1.9479128114225608E-4 1.7044237099947407E-4 0.0 7.304673042834603E-5 3.6523365214173013E-5 10-11 2.0087850867795158E-4 1.7044237099947407E-4 0.0 9.739564057112804E-5 3.6523365214173013E-5 12-13 2.0696573621364707E-4 1.7044237099947407E-4 0.0 1.2174455071391005E-4 3.6523365214173013E-5 14-15 2.191401912850381E-4 2.191401912850381E-4 0.0 1.5218068839238755E-4 4.869782028556402E-5 16-17 2.313146463564291E-4 2.191401912850381E-4 0.0 1.5826791592808305E-4 4.869782028556402E-5 18-19 2.313146463564291E-4 2.4348910142782008E-4 0.0 1.5826791592808305E-4 6.087227535695502E-5 20-21 2.313146463564291E-4 2.4348910142782008E-4 0.0 1.6435514346377854E-4 7.304673042834603E-5 22-23 2.3740187389212458E-4 2.556635564992111E-4 0.0 2.2522741882073356E-4 9.130841303543253E-5 24-25 2.4348910142782008E-4 2.9827414924907963E-4 0.0 2.4348910142782008E-4 1.0957009564251905E-4 26-27 2.4348910142782008E-4 3.2871028692755714E-4 0.0 2.9827414924907963E-4 1.0957009564251905E-4 28-29 2.4348910142782008E-4 3.2871028692755714E-4 6.0872275356955025E-6 3.956697898202077E-4 1.0957009564251905E-4 30-31 2.4957632896351555E-4 3.8958256228451216E-4 1.2174455071391005E-5 7.852523521047198E-4 1.2783177824960556E-4 32-33 2.617507840349066E-4 3.8958256228451216E-4 1.2174455071391005E-5 0.001600940841887917 1.4609346085669205E-4 34-35 3.043613767847751E-4 3.8958256228451216E-4 1.2174455071391005E-5 0.0028001246664199307 1.4609346085669205E-4 36-37 3.043613767847751E-4 3.8958256228451216E-4 1.2174455071391005E-5 0.004693252430021232 1.4609346085669205E-4 38-39 3.043613767847751E-4 4.626292927128582E-4 1.2174455071391005E-5 0.008625601418080527 1.5826791592808305E-4 40-41 3.043613767847751E-4 5.113271129984223E-4 1.2174455071391005E-5 0.012539688723532734 1.5826791592808305E-4 42-43 3.043613767847751E-4 5.356760231412042E-4 1.2174455071391005E-5 0.01617376356234295 1.5826791592808305E-4 44-45 3.1653583185616615E-4 5.539377057482908E-4 1.2174455071391005E-5 0.02053221847790093 1.5826791592808305E-4 46-47 3.2871028692755714E-4 5.843738434267682E-4 1.2174455071391005E-5 0.02506720299199408 1.6435514346377854E-4 48-49 3.2871028692755714E-4 6.026355260338547E-4 1.2174455071391005E-5 0.02932826226698093 1.8261682607086506E-4 50-51 3.2871028692755714E-4 7.000311666049827E-4 1.2174455071391005E-5 0.03392411905643103 1.8261682607086506E-4 52-53 3.2871028692755714E-4 7.061183941406783E-4 1.2174455071391005E-5 0.03786255527202602 1.9479128114225605E-4 54-55 3.2871028692755714E-4 7.061183941406783E-4 1.2174455071391005E-5 0.041983608313691884 2.1305296374934257E-4 56-57 3.4088474199894813E-4 7.426417593548513E-4 1.2174455071391005E-5 0.046634250150963244 2.252274188207336E-4 58-59 3.4088474199894813E-4 7.730778970333287E-4 1.2174455071391005E-5 0.05112053684477083 2.313146463564291E-4 60-61 3.956697898202077E-4 7.791651245690243E-4 1.2174455071391005E-5 0.0556250852211855 2.313146463564291E-4 62-63 4.626292927128582E-4 7.913395796404153E-4 1.2174455071391005E-5 0.059971365681672086 2.313146463564291E-4 64-65 4.626292927128582E-4 8.643863100687613E-4 1.2174455071391005E-5 0.06458548415372928 2.313146463564291E-4 66-67 4.7480374778424917E-4 8.887352202115433E-4 1.2174455071391005E-5 0.06977180201414185 2.3740187389212458E-4 68-69 4.7480374778424917E-4 9.069969028186298E-4 1.2174455071391005E-5 0.0745807117673413 2.5566355649921113E-4 70-71 4.991526579270312E-4 9.130841303543253E-4 1.2174455071391005E-5 0.07906091123361318 3.043613767847751E-4 72-73 5.478504782125952E-4 9.130841303543253E-4 1.2174455071391005E-5 0.08299934744920817 3.2871028692755714E-4 74-75 5.478504782125952E-4 9.130841303543253E-4 1.2174455071391005E-5 0.08609165903734148 3.2871028692755714E-4 76-77 5.600249332839862E-4 9.374330404971074E-4 1.2174455071391005E-5 0.08892221984143989 3.2871028692755714E-4 78-79 5.721993883553772E-4 9.496074955684983E-4 1.2174455071391005E-5 0.09091883047314803 3.2871028692755714E-4 80-81 5.721993883553772E-4 9.556947231041939E-4 1.2174455071391005E-5 0.09155190213686035 3.5305919707033913E-4 82-83 5.721993883553772E-4 9.678691781755849E-4 1.2174455071391005E-5 0.0920267058846446 3.5305919707033913E-4 84-85 5.721993883553772E-4 9.739564057112803E-4 1.2174455071391005E-5 0.0921849738005727 3.5305919707033913E-4 86-87 5.843738434267682E-4 9.861308607826713E-4 1.2174455071391005E-5 0.09225802053100103 3.5305919707033913E-4 88 6.087227535695502E-4 0.0010104797709254534 1.2174455071391005E-5 0.09227019498607242 3.5305919707033913E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10600 0.0 49.31068 1 CTTATAC 7015 0.0 37.014263 1 GTATCAA 19305 0.0 36.38549 1 TCAACGC 22700 0.0 30.160704 4 ATCAACG 22905 0.0 29.872847 3 CAACGCA 23315 0.0 29.305363 5 TATCAAC 24010 0.0 28.815062 2 AACGCAG 23965 0.0 28.596119 6 TATACAC 10785 0.0 27.800621 3 TTATACA 10865 0.0 25.455194 2 ACGCAGA 27410 0.0 25.002043 7 CGCAGAG 27910 0.0 24.569284 8 TACACAT 13565 0.0 21.10134 5 GCAGAGT 32750 0.0 20.899557 9 ACACATC 12810 0.0 20.758837 6 ACATCTC 12975 0.0 20.657768 8 GTACATG 23450 0.0 20.07154 1 GAGTACT 19705 0.0 19.856445 12-13 TACATGG 23660 0.0 19.410805 2 GTGGTAT 5330 0.0 19.280022 1 >>END_MODULE