##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138926_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9297076 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71774458980436 33.0 33.0 33.0 33.0 33.0 2 32.712686763020976 33.0 33.0 33.0 33.0 33.0 3 32.710376144069386 33.0 33.0 33.0 33.0 33.0 4 36.63922054633091 37.0 37.0 37.0 37.0 37.0 5 36.657535229355986 37.0 37.0 37.0 37.0 37.0 6 36.58457013796596 37.0 37.0 37.0 37.0 37.0 7 36.631180706708214 37.0 37.0 37.0 37.0 37.0 8 36.63558413419445 37.0 37.0 37.0 37.0 37.0 9 36.643218792661266 37.0 37.0 37.0 37.0 37.0 10-11 36.60352023582468 37.0 37.0 37.0 37.0 37.0 12-13 36.57707659913719 37.0 37.0 37.0 37.0 37.0 14-15 38.68701686422699 40.0 37.0 40.0 37.0 40.0 16-17 38.63719404896766 40.0 37.0 40.0 37.0 40.0 18-19 38.67087426197226 40.0 37.0 40.0 37.0 40.0 20-21 38.69418289492532 40.0 37.0 40.0 37.0 40.0 22-23 38.552654921851584 40.0 37.0 40.0 37.0 40.0 24-25 38.70179597199275 40.0 37.0 40.0 37.0 40.0 26-27 38.49678750399832 40.0 37.0 40.0 37.0 40.0 28-29 38.48478575763811 40.0 37.0 40.0 37.0 40.0 30-31 38.46511781034276 40.0 37.0 40.0 37.0 40.0 32-33 38.46023065641082 40.0 37.0 40.0 37.0 40.0 34-35 38.37404339217781 40.0 37.0 40.0 37.0 40.0 36-37 33.46856584258849 40.0 37.0 40.0 8.5 40.0 38-39 37.33861836990627 40.0 37.0 40.0 33.0 40.0 40-41 37.893712422649784 40.0 37.0 40.0 35.0 40.0 42-43 38.10373001425192 40.0 37.0 40.0 35.0 40.0 44-45 38.11128451271328 40.0 37.0 40.0 37.0 40.0 46-47 38.01137905398984 40.0 37.0 40.0 33.0 40.0 48-49 37.993105165967584 40.0 37.0 40.0 33.0 40.0 50-51 37.95334834526875 40.0 37.0 40.0 33.0 40.0 52-53 37.88755697915457 40.0 37.0 40.0 33.0 40.0 54-55 37.805812418426044 40.0 37.0 40.0 33.0 40.0 56-57 37.732956020359566 40.0 37.0 40.0 33.0 40.0 58-59 37.59400232103585 40.0 37.0 40.0 33.0 40.0 60-61 37.40819362526891 38.5 37.0 40.0 33.0 40.0 62-63 37.18573316177563 37.0 37.0 40.0 33.0 40.0 64-65 36.9791157515253 37.0 37.0 40.0 33.0 40.0 66-67 36.7135445439383 37.0 37.0 40.0 33.0 40.0 68-69 36.43969410358647 37.0 37.0 40.0 33.0 40.0 70-71 36.17211255192018 37.0 37.0 38.5 33.0 40.0 72-73 35.91107425042422 37.0 37.0 37.0 33.0 40.0 74-75 35.62641298074756 37.0 35.0 37.0 33.0 40.0 76-77 33.7836587343167 35.0 33.0 37.0 27.0 37.0 78-79 35.243069691809445 37.0 33.0 37.0 33.0 37.0 80-81 35.26845410938715 37.0 33.0 37.0 33.0 37.0 82-83 35.33576328549243 37.0 33.0 37.0 33.0 37.0 84-85 35.1823315208552 37.0 33.0 37.0 33.0 37.0 86-87 35.113077829460394 37.0 33.0 37.0 33.0 37.0 88-89 35.02574378447861 37.0 33.0 37.0 33.0 37.0 90-91 34.88970462146664 37.0 33.0 37.0 33.0 37.0 92-93 34.8688002827736 37.0 33.0 37.0 33.0 37.0 94-95 34.83141209064429 37.0 33.0 37.0 33.0 37.0 96-97 34.804252154548706 37.0 33.0 37.0 33.0 37.0 98-99 34.764116680484854 37.0 33.0 37.0 33.0 37.0 100 34.709628007445374 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 12.0 20 48.0 21 226.0 22 938.0 23 2867.0 24 6946.0 25 13860.0 26 24980.0 27 40631.0 28 60463.0 29 86049.0 30 119264.0 31 159644.0 32 214969.0 33 291500.0 34 410562.0 35 638432.0 36 1236547.0 37 2883324.0 38 3003217.0 39 102595.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.45590506090302 20.342137678556142 14.550112314882657 23.651844945658183 2 14.365914616595582 21.180465772249253 42.040734097473226 22.412885513681935 3 17.735655199890545 26.767967947984317 30.752839014517548 24.743537837607597 4 12.22021784342731 18.460020316791777 39.545248537532004 29.774513302248906 5 13.107830620067023 37.95175402692509 35.686665475503695 13.253749877504198 6 29.111518503236933 38.49191939487211 19.170661829590294 13.225900272300667 7 25.916718331656103 33.088564619671814 23.587986158228674 17.406730890443402 8 24.1765475510795 36.74768281984572 21.418217942931737 17.65755168614304 9 25.623927350921942 17.00251778085927 21.407924383967604 35.96563048425118 10-11 23.902493644238255 26.934371623938535 29.230453746963025 19.932680984860184 12-13 24.938469901719635 24.592404106409372 29.156021742750088 21.313104249120908 14-15 22.063168032615845 25.789619230820527 26.992852376381567 25.15436036018206 16-17 21.430135668461784 28.995971421552326 27.56975956741668 22.00413334256921 18-19 21.507052324838476 28.107122067196183 29.363264320954247 21.0225612870111 20-21 22.387597661339296 27.22559160972584 29.27505250563376 21.111758223301106 22-23 22.14116298249858 27.173558411220732 29.065838487669023 21.619440118611664 24-25 21.862485758433007 27.35062446100722 29.137604563455593 21.64928521710418 26-27 21.740834739911662 27.459881027050876 29.058002703989384 21.741281529048077 28-29 21.70183127067801 27.545112570483845 29.15407208743822 21.598984071399922 30-31 21.99321707302511 27.382188536202985 29.016776534306484 21.607817856465424 32-33 21.834810178780728 27.552933085109732 28.967665021498483 21.644591714611057 34-35 21.980699704452995 27.58821215386457 28.897113442549976 21.533974699132454 36-37 22.106369609887526 27.51351389335399 28.70767886620909 21.672437630549393 38-39 21.81432932292061 27.666677694783015 28.875119029953783 21.643873952342595 40-41 22.084554359373843 27.541944395933115 28.69046147825601 21.68303976643703 42-43 21.953894057314226 27.605892161421792 28.56720288408134 21.873010897182642 44-45 22.000089079667845 27.770335913859963 28.349437267035793 21.880137739436403 46-47 22.138821153841942 27.697271236156663 28.030546579089737 22.133361030911654 48-49 22.07281962863399 27.821159486503795 28.06543301030192 22.04058787456029 50-51 22.05365390998219 27.961291627861364 27.91451403538998 22.070540426766467 52-53 22.228572098650638 27.89422730702852 27.78417747218662 22.09302312213422 54-55 22.195027106424885 27.791671186430083 27.812717751782273 22.20058395536276 56-57 22.18454713588402 27.930789720642764 27.72298507532328 22.16167806814994 58-59 22.13193755369105 27.96481729508868 27.835591357981652 22.067653793238616 60-61 22.280332428487483 27.962551457910685 27.72556642143529 22.031549692166546 62-63 22.21321834274998 28.076059820586025 27.684514495263805 22.026207341400195 64-65 22.187330815188073 27.946379555644867 27.704177190126266 22.16211243904079 66-67 22.266575006135596 27.976165104563805 27.54123297015216 22.21602691914844 68-69 22.18975906751145 27.932652107355267 27.682047034853767 22.195541790279513 70-71 22.19378348024818 27.757669947456236 27.69789750175032 22.350649070545266 72-73 22.261695934049747 27.857401626449928 27.56449400821473 22.3164084312856 74-75 22.113098678337742 27.947766436442496 27.584135424188595 22.35499946103117 76-77 22.2284777630744 27.862314256259214 27.55028348128142 22.358924499384962 78-79 22.19887769231601 27.868392816775252 27.489365552111817 22.44336393879692 80-81 22.316148827595118 27.89015567469802 27.43105096569989 22.362644532006975 82-83 22.272917690785064 27.892442441583913 27.58644124528536 22.24819862234566 84-85 22.348179678921223 27.861893340471227 27.463449468135554 22.326477512471996 86-87 22.222316820545622 27.919205966505455 27.546465661784154 22.312011551164773 88-89 22.227633655801917 27.88756537229028 27.530303244105152 22.354497727802652 90-91 22.317210102535938 27.905105034650656 27.52431377477109 22.25337108804231 92-93 22.321289134656226 27.8348112533726 27.58211988041981 22.26177973155136 94-95 22.152191715919393 27.9504624405019 27.560554447492635 22.33679139608607 96-97 22.226577299996922 28.074284344441438 27.624347558612495 22.074790796949145 98-99 23.36095877904065 29.91385550438438 27.82690506855155 18.898280648023416 100 22.240623403902475 31.0098970762844 21.667299924961718 25.082179594851407 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2693.0 1 2301.5 2 2790.5 3 3858.5 4 5132.0 5 8113.5 6 10593.0 7 12146.5 8 13349.0 9 13589.5 10 12720.5 11 11621.5 12 12590.5 13 16671.0 14 25613.5 15 37704.5 16 48466.0 17 55731.5 18 57696.0 19 54779.0 20 49913.5 21 45006.5 22 42605.5 23 44848.0 24 51644.5 25 63761.5 26 80026.5 27 98227.5 28 118036.5 29 140154.5 30 160731.5 31 180937.5 32 203017.5 33 223899.0 34 245177.5 35 265958.5 36 288009.5 37 307302.5 38 319360.0 39 330149.0 40 341900.0 41 350813.5 42 356802.0 43 363417.0 44 369301.5 45 374964.0 46 377461.5 47 377094.0 48 378115.0 49 373378.0 50 363831.0 51 352833.5 52 337001.5 53 316993.0 54 296315.5 55 274555.0 56 250475.5 57 226440.0 58 202543.0 59 176011.5 60 146896.0 61 118890.5 62 93832.5 63 72116.0 64 53709.5 65 40061.5 66 30392.5 67 23250.0 68 17702.5 69 12818.0 70 9040.5 71 6444.0 72 4528.5 73 3128.0 74 2203.5 75 1504.0 76 1002.5 77 661.0 78 419.0 79 269.0 80 191.0 81 141.0 82 101.5 83 72.5 84 50.0 85 31.5 86 24.0 87 19.5 88 13.0 89 9.0 90 5.5 91 4.0 92 4.5 93 4.0 94 3.0 95 3.0 96 3.0 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.002022141154917955 4 0.014165744154398651 5 0.009024342707320021 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.001586928784983845 26-27 0.036999824363835476 28-29 0.08419285250649373 30-31 0.08277238784274087 32-33 0.03773887044807269 34-35 0.0014721925558583413 36-37 7.213737231128607 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.15767672803511E-5 56-57 2.9162281388602855E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.010859026952640991 74-75 0.03325783992278649 76-77 0.004268130421889155 78-79 0.0 80-81 0.0 82-83 0.003554462650684759 84-85 0.039739672228026185 86-87 0.04346159612495691 88-89 0.012933355594381751 90-91 6.796445241652369E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 132.0 20-21 514.0 22-23 1091.0 24-25 2523.0 26-27 3790.0 28-29 6863.0 30-31 16325.0 32-33 21268.0 34-35 32983.0 36-37 40857.0 38-39 50098.0 40-41 55476.0 42-43 65204.0 44-45 78824.0 46-47 78222.0 48-49 68698.0 50-51 61251.0 52-53 59419.0 54-55 63930.0 56-57 67439.0 58-59 67202.0 60-61 67097.0 62-63 65752.0 64-65 68674.0 66-67 73481.0 68-69 71318.0 70-71 70714.0 72-73 67984.0 74-75 69128.0 76-77 68330.0 78-79 73352.0 80-81 74525.0 82-83 72242.0 84-85 73015.0 86-87 76919.0 88-89 83801.0 90-91 88093.0 92-93 93263.0 94-95 114442.0 96-97 317057.0 98-99 572941.0 100-101 6192839.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.70716381702583 #Duplication Level Percentage of deduplicated Percentage of total 1 91.32927889887269 80.10232025674269 2 6.285303223083651 11.025322388533565 3 1.407427710264216 3.703244782342955 4 0.4636010306524509 1.6264452616470613 5 0.2044878143699969 0.8967523116767444 6 0.10132614103391294 0.533221707036508 7 0.06340292329925962 0.3892623406200541 8 0.03657816652996642 0.2566533795176173 9 0.02484651909093093 0.19612959481720255 >10 0.08169226975888322 1.1010775495410126 >50 0.0015631717731041676 0.09072049348362685 >100 4.740251090606146E-4 0.06676494886462091 >500 1.8106161833408737E-5 0.012084985176374947 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.151213994593569E-5 0.0 0.0 0.0 3 0.0 2.151213994593569E-5 0.0 0.0 0.0 4 0.0 8.604855978374276E-5 0.0 2.151213994593569E-5 0.0 5 0.0 8.604855978374276E-5 0.0 2.151213994593569E-5 0.0 6 0.0 8.604855978374276E-5 0.0 2.151213994593569E-5 0.0 7 2.151213994593569E-5 9.680462975671061E-5 0.0 4.302427989187138E-5 0.0 8 3.226820991890353E-5 1.0756069972967845E-4 0.0 5.3780349864839225E-5 0.0 9 4.302427989187138E-5 2.0436532948638905E-4 0.0 5.3780349864839225E-5 1.0756069972967845E-5 10-11 4.302427989187138E-5 2.0436532948638905E-4 0.0 5.3780349864839225E-5 1.0756069972967845E-5 12-13 4.302427989187138E-5 2.2587746943232475E-4 0.0 5.3780349864839225E-5 1.6134104959451766E-5 14-15 6.453641983780706E-5 2.689017493241961E-4 0.0 5.9158384851323144E-5 2.151213994593569E-5 16-17 6.991445482429099E-5 2.9579192425661574E-4 0.0 6.991445482429099E-5 2.151213994593569E-5 18-19 8.604855978374276E-5 3.119260292160675E-4 0.0 8.067052479725884E-5 3.226820991890353E-5 20-21 1.0218266474319452E-4 3.388162041484871E-4 0.0 8.604855978374276E-5 4.302427989187138E-5 22-23 1.1831676970264629E-4 4.1948672894574594E-4 0.0 1.0218266474319452E-4 4.302427989187138E-5 24-25 1.5058497962154983E-4 4.356208339051977E-4 0.0 1.1831676970264629E-4 4.302427989187138E-5 26-27 1.720971195674855E-4 4.4099886889168165E-4 0.0 1.5058497962154983E-4 4.302427989187138E-5 28-29 1.720971195674855E-4 4.4099886889168165E-4 0.0 3.549503091079389E-4 4.302427989187138E-5 30-31 1.8285318954045337E-4 4.947792187565209E-4 0.0 7.905711430131366E-4 4.302427989187138E-5 32-33 1.936092595134212E-4 4.947792187565209E-4 0.0 0.0017747515455396943 4.302427989187138E-5 34-35 2.3125550441880865E-4 5.378034986483922E-4 0.0 0.0031622845720525464 4.302427989187138E-5 36-37 2.5814567935122826E-4 5.808277785402636E-4 0.0 0.005189803761956985 4.302427989187138E-5 38-39 2.5814567935122826E-4 5.915838485132315E-4 0.0 0.009035098777292989 4.302427989187138E-5 40-41 2.5814567935122826E-4 6.23852058432135E-4 0.0 0.01302560073726406 4.302427989187138E-5 42-43 2.5814567935122826E-4 6.346081284051029E-4 0.0 0.01687627378758655 4.302427989187138E-5 44-45 2.5814567935122826E-4 7.099006182158779E-4 0.0 0.021340042826368207 4.302427989187138E-5 46-47 2.850358542836479E-4 7.744370380536849E-4 0.0 0.026384639643690123 4.302427989187138E-5 48-49 2.904138892701318E-4 7.744370380536849E-4 0.0 0.031439992530985006 4.302427989187138E-5 50-51 2.904138892701318E-4 9.088879127157829E-4 0.0 0.036629796292941996 4.302427989187138E-5 52-53 2.9579192425661574E-4 9.142659477022669E-4 0.0 0.041588344550480175 4.302427989187138E-5 54-55 3.0116995924309967E-4 9.142659477022669E-4 0.0 0.04695024543200464 4.302427989187138E-5 56-57 3.065479942295836E-4 9.142659477022669E-4 0.0 0.052634828412718146 4.84023148783553E-5 58-59 3.119260292160675E-4 9.142659477022669E-4 0.0 0.05830865532345869 5.3780349864839225E-5 60-61 3.226820991890354E-4 9.304000526617186E-4 0.0 0.06417609149371264 5.3780349864839225E-5 62-63 3.2806013417551925E-4 9.465341576211703E-4 0.0 0.06946269988542633 5.3780349864839225E-5 64-65 3.334381691620032E-4 0.001043338787377881 0.0 0.07415234639364032 5.3780349864839225E-5 66-67 3.334381691620032E-4 0.001043338787377881 0.0 0.07912165072115146 5.3780349864839225E-5 68-69 3.334381691620032E-4 0.0010756069972967844 0.0 0.08452657588256782 5.9158384851323144E-5 70-71 3.334381691620032E-4 0.0010917411022562363 0.0 0.08909252758609265 6.453641983780706E-5 72-73 3.4957227412145495E-4 0.0010971191372427201 0.0 0.09279799369178007 6.453641983780706E-5 74-75 3.549503091079389E-4 0.0011508994871075595 0.0 0.09598179040377856 6.453641983780706E-5 76-77 3.549503091079389E-4 0.0011939237669994307 0.0 0.09931079406041211 6.453641983780706E-5 78-79 3.7108441406739066E-4 0.0011939237669994307 0.0 0.10124688665554632 6.453641983780706E-5 80-81 3.764624490538746E-4 0.0012046798369723987 0.0 0.10194065316880274 6.991445482429099E-5 82-83 3.872185190268424E-4 0.0012100578719588825 0.0 0.10234400579278904 7.529248981077492E-5 84-85 3.9797458899981024E-4 0.0012261919769183342 0.0 0.10251610291235652 7.529248981077492E-5 86-87 4.087306589727781E-4 0.00124770411686427 0.0 0.10262366361208622 7.529248981077492E-5 88 4.087306589727781E-4 0.0012907283967561415 0.0 0.10263441968205918 7.529248981077492E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12135 0.0 52.06752 1 GTATCAA 22530 0.0 38.0696 1 TCAACGC 27520 0.0 30.62744 4 ATCAACG 27545 0.0 30.615356 3 CAACGCA 28105 0.0 30.000978 5 TATCAAC 28660 0.0 29.616505 2 AACGCAG 29005 0.0 29.068043 6 ACGCAGA 32950 0.0 25.613533 7 CGCAGAG 34075 0.0 24.780327 8 GTGGTAT 5835 0.0 22.295979 1 GCAGAGT 39315 0.0 21.380556 9 GTACATG 28710 0.0 20.369242 1 TGGTATC 5735 0.0 20.320215 2 TACATGG 28250 0.0 20.205898 2 GAGTACT 22915 0.0 19.801823 12-13 ACATGGG 28715 0.0 19.273624 3 CAGAGTA 38015 0.0 19.14156 10-11 AGAGTAC 35285 0.0 18.929512 10-11 CATGGGG 21500 0.0 17.7981 4 GTACTTT 25825 0.0 17.554636 14-15 >>END_MODULE