##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138925_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6583224 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73043025727212 33.0 33.0 33.0 33.0 33.0 2 32.725167182523336 33.0 33.0 33.0 33.0 33.0 3 32.724446562960644 33.0 33.0 33.0 33.0 33.0 4 36.65548551894938 37.0 37.0 37.0 37.0 37.0 5 36.67375832874592 37.0 37.0 37.0 37.0 37.0 6 36.587932447688246 37.0 37.0 37.0 37.0 37.0 7 36.64172478408755 37.0 37.0 37.0 37.0 37.0 8 36.64617883274213 37.0 37.0 37.0 37.0 37.0 9 36.65512399395798 37.0 37.0 37.0 37.0 37.0 10-11 36.617464634349375 37.0 37.0 37.0 37.0 37.0 12-13 36.592406167555595 37.0 37.0 37.0 37.0 37.0 14-15 38.712438085047694 40.0 37.0 40.0 37.0 40.0 16-17 38.66788757301893 40.0 37.0 40.0 37.0 40.0 18-19 38.69864248884741 40.0 37.0 40.0 37.0 40.0 20-21 38.72071208358209 40.0 37.0 40.0 37.0 40.0 22-23 38.542065181000794 40.0 37.0 40.0 37.0 40.0 24-25 38.718258499670014 40.0 37.0 40.0 37.0 40.0 26-27 38.528966243149355 40.0 37.0 40.0 37.0 40.0 28-29 38.51628821922865 40.0 37.0 40.0 37.0 40.0 30-31 38.49462020219964 40.0 37.0 40.0 37.0 40.0 32-33 38.48803889781015 40.0 37.0 40.0 37.0 40.0 34-35 38.395507916191136 40.0 37.0 40.0 37.0 40.0 36-37 33.177340768157094 40.0 37.0 40.0 8.5 40.0 38-39 37.297830112033694 40.0 37.0 40.0 33.0 40.0 40-41 37.904680484561965 40.0 37.0 40.0 35.0 40.0 42-43 38.12230253519519 40.0 37.0 40.0 37.0 40.0 44-45 38.129888849845706 40.0 37.0 40.0 37.0 40.0 46-47 38.02636078261621 40.0 37.0 40.0 33.0 40.0 48-49 38.006494957301285 40.0 37.0 40.0 33.0 40.0 50-51 37.95984866948038 40.0 37.0 40.0 33.0 40.0 52-53 37.88553204360057 40.0 37.0 40.0 33.0 40.0 54-55 37.79711374384465 40.0 37.0 40.0 33.0 40.0 56-57 37.72155167534817 40.0 37.0 40.0 33.0 40.0 58-59 37.57899496156745 40.0 37.0 40.0 33.0 40.0 60-61 37.38665940026144 38.5 37.0 40.0 33.0 40.0 62-63 37.168526590139464 37.0 37.0 40.0 33.0 40.0 64-65 36.96205449539496 37.0 37.0 40.0 33.0 40.0 66-67 36.69487071816994 37.0 37.0 40.0 33.0 40.0 68-69 36.42327898791185 37.0 37.0 40.0 33.0 40.0 70-71 36.15837067583065 37.0 37.0 38.5 33.0 40.0 72-73 35.90190904109299 37.0 37.0 37.0 33.0 40.0 74-75 35.62087755764193 37.0 35.0 37.0 33.0 40.0 76-77 33.80578859119572 35.0 33.0 37.0 27.0 37.0 78-79 35.23791826398167 37.0 33.0 37.0 33.0 37.0 80-81 35.26849180072364 37.0 33.0 37.0 33.0 37.0 82-83 35.33295549289888 37.0 33.0 37.0 33.0 37.0 84-85 35.191579261595464 37.0 33.0 37.0 33.0 37.0 86-87 35.10730631429646 37.0 33.0 37.0 33.0 37.0 88-89 35.013528338921354 37.0 33.0 37.0 33.0 37.0 90-91 34.87077756086818 37.0 33.0 37.0 33.0 37.0 92-93 34.864620980882364 37.0 33.0 37.0 33.0 37.0 94-95 34.82984718436602 37.0 33.0 37.0 33.0 37.0 96-97 34.80676581938602 37.0 33.0 37.0 33.0 37.0 98-99 34.76496764460522 37.0 33.0 37.0 33.0 37.0 100 34.709934686404964 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 4.0 20 26.0 21 175.0 22 645.0 23 1947.0 24 4599.0 25 9446.0 26 17292.0 27 28101.0 28 42125.0 29 59830.0 30 82689.0 31 111764.0 32 149986.0 33 205574.0 34 292917.0 35 458329.0 36 895172.0 37 2072963.0 38 2081536.0 39 68100.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.95567399802893 20.04414554327788 14.252697462519883 23.747482996173304 2 14.574697746879037 20.865900962810926 41.98091998692434 22.578481303385697 3 18.059491548080544 26.400946663588087 30.449209493370926 25.090352294960443 4 12.354544132823625 18.027450187418637 39.138705286872124 30.479300392885612 5 13.212491000933213 37.86249775355645 35.58150871984695 13.343502525663386 6 29.70231606884408 38.200507836282036 18.805892067473323 13.291284027400557 7 26.25516008569661 32.85350764306364 23.277697978984158 17.613634292255586 8 24.309304984913165 36.915149780715346 21.06859800000729 17.706947234364197 9 25.61112913672693 16.930655861018856 21.252930175245442 36.20528482700877 10-11 24.185011781461483 26.784649891907065 28.936027393265064 20.094310933366387 12-13 25.208446499769714 24.364657802924526 28.949014950729307 21.47788074657645 14-15 22.23147807214216 25.64066633612953 26.78512078580343 25.342734805924877 16-17 21.70384146126579 28.767842321634507 27.32594242577801 22.2023737913217 18-19 21.68199806052475 27.86276146763349 29.185737869469424 21.269502602372334 20-21 22.5600368581216 27.019445757996902 29.13329640027215 21.287220983609345 22-23 22.30012377201188 27.001925890985685 28.913772418248378 21.78417791875406 24-25 22.01181414494526 27.139509499358972 29.032293353502688 21.81638300219308 26-27 21.967896625812458 27.24643993701405 28.880486708224012 21.905176728949478 28-29 21.897675936009687 27.29472274520539 29.01229448765005 21.795306831134877 30-31 22.21110456608712 27.179072237137852 28.854927533638232 21.754895663136796 32-33 21.948827874885872 27.40104984730908 28.798817701592128 21.851304576212918 34-35 22.14446667268862 27.40252650003584 28.762639798359306 21.69036702891623 36-37 22.28727727882472 27.28770115343762 28.5556264783666 21.869395089371054 38-39 21.95572588520984 27.43533335455432 28.738805320773796 21.870135439462043 40-41 22.267412279359082 27.335018466585577 28.573649532842467 21.823919721212878 42-43 22.098564645084906 27.398980821752033 28.47693562228681 22.02551891087625 44-45 22.189888706246943 27.574966662935275 28.232972566394277 22.002172064423508 46-47 22.30304737110566 27.535320380513095 27.894140406065215 22.267491842316023 48-49 22.21990762936683 27.64959088439288 27.863617476907343 22.266884009332948 50-51 22.206631803847007 27.786545319558986 27.76331131147603 22.243511565117977 52-53 22.41797614973036 27.71015641988385 27.63139413698364 22.240473293402147 54-55 22.421713262394423 27.57822554820603 27.655658693687908 22.344402495711645 56-57 22.331901274388915 27.787559331717514 27.61755643560321 22.262982958290365 58-59 22.332968301888293 27.78743907585433 27.663313478537678 22.216279143719703 60-61 22.411837940610006 27.80067335301661 27.59732548227729 22.190163224096096 62-63 22.380259795740823 27.864722550544453 27.557707275046013 22.19731037866871 64-65 22.360863517195806 27.80171597517319 27.524447507223186 22.312973000407816 66-67 22.456174249257867 27.791732611155755 27.385678565375933 22.366414574210445 68-69 22.351490715884236 27.781097667972638 27.45553402628061 22.411877589862517 70-71 22.398972156281523 27.59766987106167 27.51448945653059 22.488868516126217 72-73 22.44749981796099 27.660238360259186 27.425256885302456 22.467004936477366 74-75 22.276870095298413 27.791809864043195 27.437241732251184 22.49407830840721 76-77 22.449374385730376 27.72460057722975 27.359051422967973 22.4669736140719 78-79 22.39475256106817 27.731556042593898 27.320590494069457 22.553100902268472 80-81 22.442322873705365 27.774089004750103 27.260790069011225 22.522798052533304 82-83 22.423083686478865 27.75427438909132 27.441086651931506 22.381555272498307 84-85 22.54809969183393 27.717408168949774 27.34629376922344 22.388198369992857 86-87 22.38475791744711 27.777793832271573 27.38542303958861 22.452025210692703 88-89 22.42059224543372 27.721226057895453 27.391749001417097 22.466432695253722 90-91 22.41628159998051 27.83970047447017 27.36154752319417 22.382470402355157 92-93 22.46678508594898 27.73362517061928 27.404817163914675 22.39477257951706 94-95 22.330420053004264 27.80745600886871 27.43931175422815 22.422812183898873 96-97 22.412056745905314 27.89454143537478 27.520992912227577 22.172408906492326 98-99 23.54153611312828 29.809797003205237 27.662683621375102 18.985983262291384 100 22.428003683222975 30.882836605028473 21.559599501384366 25.12956021036419 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1880.0 1 1580.0 2 1916.5 3 2728.5 4 3654.0 5 5788.0 6 7592.5 7 8839.0 8 9759.0 9 9846.5 10 9058.0 11 8112.5 12 8769.0 13 11613.5 14 18070.0 15 26807.0 16 34343.0 17 39332.0 18 40863.5 19 38852.0 20 35011.0 21 31325.0 22 29525.5 23 30958.0 24 35715.0 25 43965.5 26 54873.5 27 66935.0 28 79334.5 29 93045.5 30 107060.0 31 120946.0 32 136227.5 33 151200.5 34 165976.0 35 179869.5 36 195287.5 37 208604.0 38 217747.0 39 226843.0 40 235772.5 41 243499.5 42 247966.5 43 252366.0 44 257202.0 45 260334.0 46 262800.5 47 264488.0 48 263796.5 49 261427.5 50 257141.5 51 250309.5 52 241823.5 53 230387.5 54 217728.5 55 204158.0 56 188678.0 57 171568.0 58 153480.0 59 133925.0 60 112386.0 61 91577.0 62 72488.0 63 55834.0 64 41800.0 65 31123.5 66 23702.0 67 18436.0 68 14076.0 69 10157.5 70 7316.5 71 5360.5 72 3777.0 73 2525.5 74 1648.5 75 1071.0 76 693.5 77 432.5 78 285.0 79 188.5 80 129.5 81 95.0 82 68.0 83 46.0 84 33.0 85 28.0 86 24.5 87 19.5 88 14.5 89 8.5 90 4.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0015797730716743043 4 0.013686303245947579 5 0.009068505036438074 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0016712976806034661 26-27 0.033534127757047866 28-29 0.07744529508998957 30-31 0.07505443977107597 32-33 0.03390964482391533 34-35 0.0014137635922861695 36-37 7.7025751449931015 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 8.158585940830998E-6 56-57 1.6436514374142733E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011792809277594057 74-75 0.03334367649761909 76-77 0.00472021798501019 78-79 0.0 80-81 0.0 82-83 0.003494888679561525 84-85 0.03560816615174692 86-87 0.038671190792193784 88-89 0.011708181298740364 90-91 1.903247463565896E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 83.0 20-21 343.0 22-23 651.0 24-25 1739.0 26-27 2530.0 28-29 4692.0 30-31 11291.0 32-33 14627.0 34-35 22813.0 36-37 28620.0 38-39 35201.0 40-41 37938.0 42-43 44562.0 44-45 54517.0 46-47 53768.0 48-49 48219.0 50-51 42429.0 52-53 40227.0 54-55 43410.0 56-57 46233.0 58-59 46387.0 60-61 46228.0 62-63 44539.0 64-65 46294.0 66-67 49449.0 68-69 49019.0 70-71 49018.0 72-73 46108.0 74-75 46789.0 76-77 46615.0 78-79 50117.0 80-81 51309.0 82-83 49359.0 84-85 49412.0 86-87 52412.0 88-89 57133.0 90-91 60528.0 92-93 65092.0 94-95 79244.0 96-97 223692.0 98-99 407513.0 100-101 4433074.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.70323380161507 #Duplication Level Percentage of deduplicated Percentage of total 1 91.2373921338531 80.01814333764953 2 6.364427786992072 11.163617964321224 3 1.3643761944749815 3.589806131321914 4 0.5128095047268976 1.7990020755501406 5 0.2122598195820417 0.9307936291746218 6 0.10938069666311194 0.5755824487697067 7 0.06607543244131255 0.40565203699602786 8 0.03595817231452734 0.25229183948638023 9 0.022412567326575875 0.17690891691034105 >10 0.07376091566145739 0.9671288782843055 >50 9.127054171116807E-4 0.05485784616158451 >100 1.836926018435177E-4 0.03155326696443446 >500 5.037794492976481E-5 0.03466162840970443 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.5190125689176003E-5 0.0 2 0.0 3.0380251378352006E-5 0.0 1.5190125689176003E-5 0.0 3 0.0 3.0380251378352006E-5 0.0 1.5190125689176003E-5 0.0 4 0.0 6.076050275670401E-5 0.0 1.5190125689176003E-5 0.0 5 0.0 7.595062844588001E-5 0.0 1.5190125689176003E-5 0.0 6 0.0 7.595062844588001E-5 0.0 1.5190125689176003E-5 0.0 7 0.0 7.595062844588001E-5 0.0 1.5190125689176003E-5 0.0 8 0.0 1.0633087982423202E-4 0.0 1.5190125689176003E-5 1.5190125689176003E-5 9 0.0 2.7342226240516807E-4 0.0 3.0380251378352006E-5 1.5190125689176003E-5 10-11 0.0 2.7342226240516807E-4 0.0 3.0380251378352006E-5 1.5190125689176003E-5 12-13 0.0 2.7342226240516807E-4 0.0 3.0380251378352006E-5 1.5190125689176003E-5 14-15 0.0 3.7975314222940006E-4 0.0 3.0380251378352006E-5 1.5190125689176003E-5 16-17 0.0 3.7975314222940006E-4 0.0 4.5570377067528005E-5 1.5190125689176003E-5 18-19 0.0 4.101333936077521E-4 0.0 6.0760502756704006E-5 3.797531422294001E-5 20-21 0.0 4.405136449861041E-4 0.0 7.595062844588001E-5 4.5570377067528005E-5 22-23 7.595062844588002E-6 4.6329883351986804E-4 0.0 7.595062844588001E-5 5.316543991211601E-5 24-25 2.2785188533764006E-5 5.088692105873961E-4 0.0 7.595062844588001E-5 6.835556560129202E-5 26-27 3.0380251378352006E-5 5.392494619657481E-4 0.0 1.2911606835799602E-4 7.595062844588001E-5 28-29 3.0380251378352006E-5 5.468445248103361E-4 0.0 2.2785188533764006E-4 7.595062844588001E-5 30-31 3.0380251378352006E-5 6.076050275670401E-4 0.0 8.202667872155042E-4 7.595062844588001E-5 32-33 4.5570377067528005E-5 6.076050275670401E-4 0.0 0.002103832407950876 1.0633087982423202E-4 34-35 4.5570377067528005E-5 6.759605931683321E-4 0.0 0.003729175856692709 1.2152100551340803E-4 36-37 4.5570377067528005E-5 7.291260330804481E-4 0.0 0.006911507188575081 1.2152100551340803E-4 38-39 4.5570377067528005E-5 7.443161587696242E-4 0.0 0.012379952436678443 1.2152100551340803E-4 40-41 4.5570377067528005E-5 8.202667872155041E-4 0.0 0.01819777057563285 1.4430619404717202E-4 42-43 4.5570377067528005E-5 8.354569129046801E-4 0.0 0.023613050383824094 1.5190125689176003E-4 44-45 4.5570377067528005E-5 9.417877927289122E-4 0.0 0.029590364842514854 1.5190125689176003E-4 46-47 4.5570377067528005E-5 0.0010329285468639682 0.0 0.03678288935633969 1.5190125689176003E-4 48-49 4.5570377067528005E-5 0.0010329285468639682 0.0 0.04410452993852253 1.5190125689176003E-4 50-51 4.5570377067528005E-5 0.0011924248666003163 0.0 0.05100844206425302 1.5190125689176003E-4 52-53 4.5570377067528005E-5 0.0012000199294449042 0.0 0.05794273444136186 1.5949631973634804E-4 54-55 4.5570377067528005E-5 0.0012000199294449042 0.0 0.06384409827160674 1.74686445425524E-4 56-57 4.5570377067528005E-5 0.0012000199294449042 0.0 0.06854544217240671 1.8987657111470003E-4 58-59 4.5570377067528005E-5 0.0012000199294449042 0.0 0.07347463795854432 1.9747163395928804E-4 60-61 4.5570377067528005E-5 0.0012152100551340802 0.0 0.07841142880752652 2.1266175964846404E-4 62-63 4.5570377067528005E-5 0.0012304001808232563 0.0 0.08325707890237367 2.1266175964846404E-4 64-65 4.5570377067528005E-5 0.0013367310606474882 0.0 0.08778373635774811 2.1266175964846404E-4 66-67 4.5570377067528005E-5 0.0013443261234920762 0.0 0.09234836912734551 2.1266175964846404E-4 68-69 4.5570377067528005E-5 0.0013747063748704282 0.0 0.09700414265107796 2.1266175964846404E-4 70-71 4.5570377067528005E-5 0.0013898965005596042 0.0 0.10143965935231734 2.2025682249305202E-4 72-73 4.5570377067528005E-5 0.0013974915634041923 0.0 0.10544225747141522 2.4304201102681605E-4 74-75 4.5570377067528005E-5 0.0014354668776271323 0.0 0.10815369490693313 2.4304201102681605E-4 76-77 4.5570377067528005E-5 0.0014810372546946603 0.0 0.11081196690253894 2.4304201102681605E-4 78-79 4.5570377067528005E-5 0.0014886323175392483 0.0 0.11226262390585524 2.4304201102681605E-4 80-81 4.5570377067528005E-5 0.0014886323175392483 0.0 0.1127942783049764 2.5063707387140406E-4 82-83 4.5570377067528005E-5 0.0014886323175392483 0.0 0.11324998207565168 2.7342226240516807E-4 84-85 4.5570377067528005E-5 0.0015114175060730122 0.0 0.11339428826969886 2.7342226240516807E-4 86-87 4.5570377067528005E-5 0.0015645829459851282 0.0 0.11347023889814474 2.7342226240516807E-4 88 4.5570377067528005E-5 0.0017164842028768884 0.0 0.11347023889814474 2.7342226240516807E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8270 0.0 53.55946 1 GTATCAA 15870 0.0 39.374443 1 TCAACGC 19270 0.0 31.389948 4 ATCAACG 19535 0.0 30.986362 3 CAACGCA 19765 0.0 30.55685 5 TATCAAC 20205 0.0 30.40066 2 AACGCAG 20445 0.0 29.662107 6 ACGCAGA 22990 0.0 26.323048 7 CGCAGAG 23795 0.0 25.396801 8 GCAGAGT 27695 0.0 21.74371 9 GTACATG 19600 0.0 21.232473 1 TACATGG 19905 0.0 20.480022 2 GAGTACT 16615 0.0 20.270481 12-13 ACATGGG 20240 0.0 19.46898 3 GTGGTAT 3915 0.0 19.43548 1 CAGAGTA 26870 0.0 19.374636 10-11 TGGTATC 3775 0.0 19.142824 2 AGAGTAC 25025 0.0 19.028429 10-11 GTACTTT 18575 0.0 17.982933 14-15 CATGGGG 15595 0.0 17.853498 4 >>END_MODULE