##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138923_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7879987 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71154508249823 33.0 33.0 33.0 33.0 33.0 2 32.70261803731402 33.0 33.0 33.0 33.0 33.0 3 32.70470217780816 33.0 33.0 33.0 33.0 33.0 4 36.62935459157483 37.0 37.0 37.0 37.0 37.0 5 36.648108048909215 37.0 37.0 37.0 37.0 37.0 6 36.57191997905581 37.0 37.0 37.0 37.0 37.0 7 36.620810161235035 37.0 37.0 37.0 37.0 37.0 8 36.62618440867986 37.0 37.0 37.0 37.0 37.0 9 36.6334229993019 37.0 37.0 37.0 37.0 37.0 10-11 36.592365507709594 37.0 37.0 37.0 37.0 37.0 12-13 36.56426076591243 37.0 37.0 37.0 37.0 37.0 14-15 38.66921963196132 40.0 37.0 40.0 37.0 40.0 16-17 38.61738299822068 40.0 37.0 40.0 37.0 40.0 18-19 38.64510347542451 40.0 37.0 40.0 37.0 40.0 20-21 38.66755728073191 40.0 37.0 40.0 37.0 40.0 22-23 38.52047993238931 40.0 37.0 40.0 37.0 40.0 24-25 38.67408201975678 40.0 37.0 40.0 37.0 40.0 26-27 38.46279120592735 40.0 37.0 40.0 37.0 40.0 28-29 38.45407713856329 40.0 37.0 40.0 37.0 40.0 30-31 38.43818732748392 40.0 37.0 40.0 37.0 40.0 32-33 38.4377149491225 40.0 37.0 40.0 37.0 40.0 34-35 38.3518139849766 40.0 37.0 40.0 37.0 40.0 36-37 33.30597242558363 40.0 37.0 40.0 8.5 40.0 38-39 37.28064093306547 40.0 37.0 40.0 33.0 40.0 40-41 37.85463546180533 40.0 37.0 40.0 35.0 40.0 42-43 38.067915665714736 40.0 37.0 40.0 35.0 40.0 44-45 38.07720994664917 40.0 37.0 40.0 35.0 40.0 46-47 37.97494610417693 40.0 37.0 40.0 33.0 40.0 48-49 37.955434499245996 40.0 37.0 40.0 33.0 40.0 50-51 37.913534247269055 40.0 37.0 40.0 33.0 40.0 52-53 37.841077805324815 40.0 37.0 40.0 33.0 40.0 54-55 37.75323367413354 40.0 37.0 40.0 33.0 40.0 56-57 37.67622076837787 40.0 37.0 40.0 33.0 40.0 58-59 37.53061339194988 40.0 37.0 40.0 33.0 40.0 60-61 37.3384954625804 37.0 37.0 40.0 33.0 40.0 62-63 37.111762545264206 37.0 37.0 40.0 33.0 40.0 64-65 36.895364853921606 37.0 37.0 40.0 33.0 40.0 66-67 36.62229769167093 37.0 37.0 40.0 33.0 40.0 68-69 36.34489948149114 37.0 37.0 40.0 33.0 40.0 70-71 36.0781618812524 37.0 37.0 38.5 33.0 40.0 72-73 35.81842114676462 37.0 37.0 37.0 33.0 40.0 74-75 35.53747372551754 37.0 33.0 37.0 33.0 40.0 76-77 33.69352890491429 35.0 33.0 37.0 27.0 37.0 78-79 35.167508824766344 37.0 33.0 37.0 33.0 37.0 80-81 35.201113391601055 37.0 33.0 37.0 33.0 37.0 82-83 35.277453159265015 37.0 33.0 37.0 33.0 37.0 84-85 35.126416929226124 37.0 33.0 37.0 33.0 37.0 86-87 35.05960063922703 37.0 33.0 37.0 33.0 37.0 88-89 34.97323964908704 37.0 33.0 37.0 33.0 37.0 90-91 34.83763359135517 37.0 33.0 37.0 33.0 37.0 92-93 34.817011383107584 37.0 33.0 37.0 33.0 37.0 94-95 34.777334767981685 37.0 33.0 37.0 33.0 37.0 96-97 34.75618445795328 37.0 33.0 37.0 33.0 37.0 98-99 34.71332582852978 37.0 33.0 37.0 33.0 37.0 100 34.65677879828699 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 0.0 19 8.0 20 42.0 21 234.0 22 913.0 23 2677.0 24 6234.0 25 12543.0 26 22349.0 27 36205.0 28 54019.0 29 76273.0 30 103852.0 31 140453.0 32 187012.0 33 252539.0 34 357193.0 35 553704.0 36 1073238.0 37 2463776.0 38 2454427.0 39 82295.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.789282139678654 20.065997570808175 14.174122368475988 23.97059792103718 2 14.540239723745737 21.063042362887145 41.719485070216486 22.67723284315063 3 18.010883722146172 26.370443261482052 30.495361518081392 25.123311498290384 4 12.498273866336332 18.018639705135755 39.04969995735434 30.433386471173566 5 13.354851253736996 37.74047113686402 35.53766795222534 13.367009657173638 6 29.763665853763467 38.087778571208304 18.85326714371483 13.295288431313402 7 26.307073856847733 32.756589573053866 23.398921851013206 17.537414719085195 8 24.328898004527165 36.78405814628882 21.172230360278512 17.714813488905502 9 25.64771997720301 16.938390888208318 21.28113916939203 36.132749965196645 10-11 24.27990680695285 26.631046472538593 29.0139184239771 20.075128296531453 12-13 25.137687409890397 24.290649210461897 29.054959100820852 21.516704278826857 14-15 22.280944118308824 25.51505478371982 26.69850216757972 25.505498930391635 16-17 21.79246615508376 28.710561324530104 27.271961235469043 22.225011284917095 18-19 21.84247892794747 27.868459681469016 29.039775065618763 21.24928632496475 20-21 22.643895397257232 27.04376531801994 28.87540788565718 21.43693139906565 22-23 22.521807796944195 26.909200725141297 28.655791662499624 21.913199815414888 24-25 22.230765198023768 27.12360543536363 28.684374110238913 21.961255256373686 26-27 22.17690274534964 27.104336293184485 28.694587577059323 22.024173384406552 28-29 22.092974912927957 27.224109973318335 28.709909799034396 21.973005314719313 30-31 22.279589333942127 27.145155208705958 28.61516835809294 21.960087099258974 32-33 22.09687183466059 27.28624279974388 28.605846656073087 22.011038709522442 34-35 22.263719138450977 27.177585689067595 28.557014438832635 22.001680733648794 36-37 22.487176300897165 27.171759512936543 28.299068150877797 22.041996035288495 38-39 22.200804540823153 27.371822580734467 28.51463829849698 21.9127345799454 40-41 22.42845978710556 27.240680422785392 28.308324415100856 22.022535375008196 42-43 22.24303496097286 27.44157650635127 28.12672327002249 22.188665262653377 44-45 22.38667370362368 27.467693821003376 27.999584919239634 22.14604755613331 46-47 22.40919375014347 27.457689616532143 27.746018028182952 22.387098605141436 48-49 22.309689667126907 27.685655026310485 27.62220813328743 22.38244717327518 50-51 22.37715564778224 27.669696365228425 27.595429189230735 22.3577187977586 52-53 22.55970827438631 27.626749766889404 27.36873683309822 22.444805125626065 54-55 22.544889347322147 27.520921143933236 27.449338997341904 22.484850511402712 56-57 22.506544141638305 27.62418090178121 27.44871228800315 22.420562668577336 58-59 22.429366020930793 27.71846912350894 27.441388406674577 22.410776448885695 60-61 22.5679783334923 27.62453953689672 27.4582004739984 22.34928165561258 62-63 22.580329474772206 27.762257090122745 27.33052339268917 22.326890042415883 64-65 22.559299301961694 27.640470659472182 27.320284138656948 22.479945899909172 66-67 22.625962935114877 27.67646164630427 27.17271902131553 22.524856397265324 68-69 22.438643404317034 27.67685161792304 27.300304034981 22.584200942778924 70-71 22.488943023916043 27.52103554139994 27.326137832217285 22.66388360246673 72-73 22.55682169665836 27.591194920208217 27.204419743894686 22.647563639238736 74-75 22.423343588307468 27.67945724703794 27.28257364845334 22.61462551620125 76-77 22.59288198219721 27.612271306362047 27.224723130936475 22.570123580504273 78-79 22.479032051690947 27.585849107708434 27.17464583587377 22.760473004726848 80-81 22.656911404279345 27.62407674077719 27.081494374245235 22.63751748069823 82-83 22.481588286095988 27.674275887091053 27.28657581711529 22.55756000969767 84-85 22.627778713908704 27.63061791008096 27.166672453579743 22.574930922430596 86-87 22.542035586723948 27.621119755201 27.246180696854683 22.590663961220375 88-89 22.53718978468144 27.609892114695082 27.2191174360233 22.633800664600177 90-91 22.582199727861283 27.640965509999987 27.190310559521606 22.58652420261712 92-93 22.643483519904166 27.584661168751474 27.278074832620934 22.49378047872343 94-95 22.393397046587502 27.698383868303782 27.329958467918186 22.578260617190526 96-97 22.498854517457655 27.74022375509625 27.373711071328717 22.387210656117375 98-99 23.72264538946966 29.683832837343637 27.421201403697932 19.172320369488773 100 22.6273413779474 30.682385498214714 21.321484690685647 25.36878843315224 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2025.0 1 1767.0 2 2175.0 3 3028.5 4 3971.0 5 6273.5 6 8304.0 7 9679.5 8 10670.5 9 10729.5 10 9938.0 11 9119.0 12 9820.5 13 12650.5 14 19165.0 15 28045.0 16 35976.0 17 41572.0 18 43318.5 19 41221.0 20 37626.0 21 33939.0 22 32696.5 23 35247.5 24 40904.0 25 50308.5 26 63582.0 27 77530.0 28 91816.5 29 108317.5 30 124574.0 31 141749.5 32 160855.0 33 179447.5 34 196369.0 35 211665.0 36 229421.5 37 247610.5 38 260783.0 39 269601.0 40 279056.0 41 289048.0 42 296365.0 43 303887.0 44 312535.5 45 317785.5 46 317763.0 47 318350.0 48 319640.5 49 318102.0 50 312682.5 51 304333.0 52 294557.5 53 281117.5 54 264983.0 55 246750.5 56 228688.0 57 209450.5 58 188239.5 59 164563.0 60 137274.0 61 111955.5 62 88949.0 63 68664.0 64 52372.0 65 39930.0 66 30541.0 67 23576.5 68 18244.5 69 13607.5 70 10002.0 71 7392.5 72 5321.0 73 3681.0 74 2536.0 75 1698.5 76 1121.5 77 732.0 78 456.5 79 316.0 80 225.0 81 152.5 82 105.5 83 69.0 84 43.5 85 32.5 86 28.5 87 23.0 88 16.0 89 10.0 90 7.0 91 5.0 92 3.5 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0018527949348139787 4 0.01404824652629503 5 0.008413719464257998 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0015422816514751925 26-27 0.03533094653161209 28-29 0.08249045852740906 30-31 0.07945288199959577 32-33 0.036413725140005265 34-35 0.0013535583900827586 36-37 7.427002546553949 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.405105233415197E-5 56-57 7.546441314378777E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011045943218142226 74-75 0.03365003841921894 76-77 0.004549983881440079 78-79 0.0 80-81 0.0 82-83 0.0032314314444927376 84-85 0.037862229565855963 86-87 0.04148909231077149 88-89 0.012274055037777822 90-91 1.5957468877350574E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 99.0 20-21 415.0 22-23 909.0 24-25 2282.0 26-27 3293.0 28-29 5517.0 30-31 13425.0 32-33 17474.0 34-35 27063.0 36-37 33277.0 38-39 40931.0 40-41 45233.0 42-43 51981.0 44-45 63666.0 46-47 63082.0 48-49 56389.0 50-51 50944.0 52-53 49139.0 54-55 52942.0 56-57 55401.0 58-59 55959.0 60-61 55109.0 62-63 53292.0 64-65 56263.0 66-67 60252.0 68-69 60681.0 70-71 60087.0 72-73 57697.0 74-75 58728.0 76-77 58149.0 78-79 62311.0 80-81 63015.0 82-83 61430.0 84-85 62135.0 86-87 65601.0 88-89 70732.0 90-91 74967.0 92-93 80393.0 94-95 97213.0 96-97 275042.0 98-99 487442.0 100-101 5270027.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.80521279969612 #Duplication Level Percentage of deduplicated Percentage of total 1 92.04752600657142 81.74300134699138 2 5.806347437330625 10.312678395222326 3 1.236690429601096 3.2947367030421884 4 0.44520621835704494 1.581465318437814 5 0.18224625398117328 0.8092208683372779 6 0.0916691012424587 0.4884416425796059 7 0.060515022566260325 0.3761834619602613 8 0.03596417529049327 0.2555044991870262 9 0.023687905000594985 0.18932484999211407 >10 0.06936999309040362 0.8884634059926328 >50 6.726374005816558E-4 0.03946772420897306 >100 1.048195677643317E-4 0.02151178404830367 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.269037626584917E-5 0.0 2 0.0 1.269037626584917E-5 0.0 1.269037626584917E-5 0.0 3 0.0 1.269037626584917E-5 0.0 1.269037626584917E-5 0.0 4 0.0 1.269037626584917E-5 0.0 1.269037626584917E-5 0.0 5 0.0 1.269037626584917E-5 0.0 1.269037626584917E-5 0.0 6 0.0 1.269037626584917E-5 0.0 1.269037626584917E-5 1.269037626584917E-5 7 0.0 1.269037626584917E-5 0.0 1.269037626584917E-5 1.269037626584917E-5 8 0.0 1.269037626584917E-5 0.0 1.269037626584917E-5 2.538075253169834E-5 9 0.0 2.538075253169834E-5 0.0 1.269037626584917E-5 5.076150506339668E-5 10-11 0.0 2.538075253169834E-5 0.0 1.269037626584917E-5 5.076150506339668E-5 12-13 0.0 2.538075253169834E-5 0.0 1.269037626584917E-5 5.076150506339668E-5 14-15 0.0 5.076150506339668E-5 0.0 1.269037626584917E-5 8.248744572801961E-5 16-17 0.0 5.076150506339668E-5 0.0 1.269037626584917E-5 1.0152301012679336E-4 18-19 0.0 5.710669319632126E-5 0.0 1.269037626584917E-5 1.0152301012679336E-4 20-21 0.0 6.345188132924584E-5 0.0 1.269037626584917E-5 1.0152301012679336E-4 22-23 0.0 8.883263386094418E-5 0.0 1.269037626584917E-5 1.1421338639264252E-4 24-25 0.0 1.0152301012679335E-4 0.0 3.172594066462292E-5 1.2690376265849169E-4 26-27 0.0 1.1421338639264253E-4 0.0 5.710669319632126E-5 1.3959413892434085E-4 28-29 0.0 1.1421338639264253E-4 0.0 2.030460202535867E-4 1.3959413892434085E-4 30-31 0.0 1.5228451519019002E-4 0.0 0.0010723367944642547 1.3959413892434085E-4 32-33 0.0 1.5228451519019002E-4 0.0 0.0030774162444684233 1.649748914560392E-4 34-35 0.0 2.093912083865113E-4 0.0 0.006338842944791661 1.649748914560392E-4 36-37 0.0 2.6649790158283257E-4 0.0 0.011008901410624154 1.649748914560392E-4 38-39 0.0 2.791882778486817E-4 0.0 0.020869323769188958 1.649748914560392E-4 40-41 0.0 3.1725940664622924E-4 0.0 0.028083802676324213 1.7766526772188836E-4 42-43 0.0 3.236045947791538E-4 0.0 0.03430843223472323 1.9035564398773756E-4 44-45 0.0 3.553305354437767E-4 0.0 0.0415800178350548 2.0304602025358672E-4 46-47 0.0 3.807112879754751E-4 0.0 0.04886429381165223 2.157363965194359E-4 48-49 0.0 3.807112879754751E-4 0.0 0.05598994008492654 2.4111714905113423E-4 50-51 0.0 4.568535455705701E-4 0.0 0.06291888552608019 2.4111714905113423E-4 52-53 0.0 4.568535455705701E-4 0.0 0.06988590209603138 2.5380752531698337E-4 54-55 0.0 4.568535455705701E-4 0.0 0.07634530361534861 2.728430897157571E-4 56-57 0.0 4.6954392183641926E-4 0.0 0.08213211519257582 2.982238422474555E-4 58-59 0.0 4.6954392183641926E-4 0.0 0.08817273429512003 3.1725940664622924E-4 60-61 0.0 4.7588910996934386E-4 0.0 0.09404203331807527 3.299497829120784E-4 62-63 0.0 4.949246743681177E-4 0.0 0.09947985954799163 3.299497829120784E-4 64-65 0.0 5.837573082290618E-4 0.0 0.10428316696461555 3.299497829120784E-4 66-67 0.0 5.837573082290618E-4 0.0 0.1101080496706403 3.299497829120784E-4 68-69 0.0 6.091380607607601E-4 0.0 0.11537455582096773 3.299497829120784E-4 70-71 0.0 6.091380607607601E-4 0.0 0.12004461428680022 3.680209117096259E-4 72-73 0.0 6.154832488936847E-4 0.0 0.1237819300970928 3.9340166424132425E-4 74-75 0.0 6.472091895583076E-4 0.0 0.1265991936281113 3.9340166424132425E-4 76-77 0.0 7.043158827546289E-4 0.0 0.12946721866419322 3.9974685237424885E-4 78-79 0.0 7.360418234192518E-4 0.0 0.13143422698539986 4.0609204050717345E-4 80-81 0.0 7.360418234192518E-4 0.0 0.13203067466989477 4.251276049059472E-4 82-83 0.0 7.360418234192518E-4 0.0 0.1324050407697373 4.4416316930472093E-4 84-85 0.0 7.360418234192518E-4 0.0 0.1325890512255921 4.4416316930472093E-4 86-87 0.0 7.48732199685101E-4 0.0 0.13272230017638353 4.4416316930472093E-4 88 0.0 7.48732199685101E-4 0.0 0.13272864536451645 4.4416316930472093E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9920 0.0 48.245636 1 GTATCAA 18485 0.0 36.550774 1 TCAACGC 20745 0.0 31.422102 4 ATCAACG 20840 0.0 31.36077 3 CAACGCA 21455 0.0 30.436428 5 TATCAAC 21960 0.0 30.09006 2 AACGCAG 21965 0.0 29.80535 6 ACGCAGA 25145 0.0 25.985321 7 CGCAGAG 25705 0.0 25.43573 8 GCAGAGT 30165 0.0 21.618668 9 GTACATG 21605 0.0 21.385551 1 TACATGG 21925 0.0 20.608568 2 GAGTACT 18250 0.0 19.90207 12-13 ACATGGG 21960 0.0 19.802198 3 GTGGTAT 4815 0.0 19.050364 1 CAGAGTA 29730 0.0 18.907501 10-11 AGAGTAC 27680 0.0 18.574585 10-11 CATGGGG 18015 0.0 17.537956 4 GTACTTT 20725 0.0 17.484762 14-15 TGGTATC 5265 0.0 16.292915 2 >>END_MODULE