##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138922_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9481611 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72443923295313 33.0 33.0 33.0 33.0 33.0 2 32.7181312331839 33.0 33.0 33.0 33.0 33.0 3 32.71703658798067 33.0 33.0 33.0 33.0 33.0 4 36.646753911334265 37.0 37.0 37.0 37.0 37.0 5 36.66385364259302 37.0 37.0 37.0 37.0 37.0 6 36.58438486877388 37.0 37.0 37.0 37.0 37.0 7 36.63400143709756 37.0 37.0 37.0 37.0 37.0 8 36.63850921536435 37.0 37.0 37.0 37.0 37.0 9 36.64819005968501 37.0 37.0 37.0 37.0 37.0 10-11 36.60872213593238 37.0 37.0 37.0 37.0 37.0 12-13 36.580076160053395 37.0 37.0 37.0 37.0 37.0 14-15 38.69013952375815 40.0 37.0 40.0 37.0 40.0 16-17 38.640243730733104 40.0 37.0 40.0 37.0 40.0 18-19 38.67260748199858 40.0 37.0 40.0 37.0 40.0 20-21 38.697339952264784 40.0 37.0 40.0 37.0 40.0 22-23 38.546595673690376 40.0 37.0 40.0 37.0 40.0 24-25 38.697839291397436 40.0 37.0 40.0 37.0 40.0 26-27 38.48789848363991 40.0 37.0 40.0 37.0 40.0 28-29 38.4793497129896 40.0 37.0 40.0 37.0 40.0 30-31 38.46120209870854 40.0 37.0 40.0 37.0 40.0 32-33 38.458172190239395 40.0 37.0 40.0 37.0 40.0 34-35 38.36938805492 40.0 37.0 40.0 37.0 40.0 36-37 33.344628719838695 40.0 37.0 40.0 8.5 40.0 38-39 37.30203138756245 40.0 37.0 40.0 33.0 40.0 40-41 37.87604776113587 40.0 37.0 40.0 35.0 40.0 42-43 38.09053732869032 40.0 37.0 40.0 35.0 40.0 44-45 38.10103050802344 40.0 37.0 40.0 35.0 40.0 46-47 37.99819387088816 40.0 37.0 40.0 33.0 40.0 48-49 37.97946940044919 40.0 37.0 40.0 33.0 40.0 50-51 37.932509285810156 40.0 37.0 40.0 33.0 40.0 52-53 37.862580613417066 40.0 37.0 40.0 33.0 40.0 54-55 37.7779838384796 40.0 37.0 40.0 33.0 40.0 56-57 37.697115109392975 40.0 37.0 40.0 33.0 40.0 58-59 37.55538129793487 40.0 37.0 40.0 33.0 40.0 60-61 37.36752269581099 38.5 37.0 40.0 33.0 40.0 62-63 37.148010129265394 37.0 37.0 40.0 33.0 40.0 64-65 36.94105404435787 37.0 37.0 40.0 33.0 40.0 66-67 36.672036035525494 37.0 37.0 40.0 33.0 40.0 68-69 36.3968368784063 37.0 37.0 40.0 33.0 40.0 70-71 36.13137857387578 37.0 37.0 38.5 33.0 40.0 72-73 35.8758733923503 37.0 37.0 37.0 33.0 40.0 74-75 35.589696077214846 37.0 35.0 37.0 33.0 40.0 76-77 33.74692893176116 35.0 33.0 37.0 27.0 37.0 78-79 35.20536052780745 37.0 33.0 37.0 33.0 37.0 80-81 35.22816634717745 37.0 33.0 37.0 33.0 37.0 82-83 35.30047575609579 37.0 33.0 37.0 33.0 37.0 84-85 35.147610137434185 37.0 33.0 37.0 33.0 37.0 86-87 35.07572536580613 37.0 33.0 37.0 33.0 37.0 88-89 34.99048182207923 37.0 33.0 37.0 33.0 37.0 90-91 34.85361692214603 37.0 33.0 37.0 33.0 37.0 92-93 34.83804360587338 37.0 33.0 37.0 33.0 37.0 94-95 34.79941181477185 37.0 33.0 37.0 33.0 37.0 96-97 34.77659754279901 37.0 33.0 37.0 33.0 37.0 98-99 34.7373736431185 37.0 33.0 37.0 33.0 37.0 100 34.680582889523926 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 11.0 20 43.0 21 253.0 22 1027.0 23 3021.0 24 7089.0 25 14523.0 26 26082.0 27 42224.0 28 63033.0 29 89486.0 30 122727.0 31 164658.0 32 220631.0 33 301359.0 34 424683.0 35 662831.0 36 1282193.0 37 2957154.0 38 2999892.0 39 98689.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.32972761696298 20.418914043193716 14.42058738752307 23.830770952320233 2 14.326753122438793 21.23529429756188 41.970779016350704 22.467173563648622 3 17.728698240298012 26.831560834409558 30.685450039999218 24.754290885293205 4 12.305944877670488 18.469064678993146 39.5309808892043 29.694009554132066 5 13.189265816803331 37.92917008587937 35.68635992549105 13.19520417182625 6 29.09331547138983 38.539821977509945 19.14425723645486 13.222605314645369 7 25.853423010077087 33.04251777466931 23.66819309503417 17.435866120219444 8 24.149514254486924 36.74151998009621 21.492782186487087 17.616183578929785 9 25.66621853606945 16.88816383629322 21.47050749076291 35.97511013687442 10-11 24.002076229450882 26.8876248983427 29.15113265034813 19.95916622185829 12-13 24.97423169965526 24.50723827417092 29.13684182993797 21.381688196235853 14-15 22.129984029085353 25.692791024647605 26.932875647397896 25.244349298869146 16-17 21.51468774662871 28.91989030134225 27.457443677029147 22.107978274999894 18-19 21.595343871415945 28.05097150684625 29.29616602073213 21.057518601005672 20-21 22.464988697610927 27.165305976621074 29.12927702415334 21.24042830161466 22-23 22.270344332208158 27.175018201369777 28.890400725470606 21.66423674095146 24-25 22.00624988493981 27.304910797955152 29.014268729649512 21.67457058745553 26-27 21.924802830187183 27.37978593067161 28.89633996029419 21.79907127884702 28-29 21.85438738804093 27.501550589641464 28.917658049849337 21.72640397246827 30-31 22.119675131917838 27.359884973621725 28.85264201873621 21.667797875724236 32-33 21.981263423319476 27.482566230533873 28.825830040576257 21.710340305570398 34-35 22.086812128887882 27.45209235903488 28.811569688463546 21.649525823613693 36-37 22.293218919148046 27.411682719042002 28.543716439806825 21.75138192200313 38-39 21.969815281047374 27.52768507463979 28.78097591578354 21.721523728529295 40-41 22.18446780794968 27.41213057816458 28.59178624687835 21.811615367007388 42-43 22.017533966713206 27.568455193494568 28.45225625915253 21.9617545806397 44-45 22.158379931534146 27.642272443277243 28.272609916932506 21.926737708256105 46-47 22.20306173845598 27.5991670169594 27.970553151464017 22.22721809312061 48-49 22.126146150419228 27.811487619274207 27.895708965769266 22.1666572645373 50-51 22.13250173173059 27.843028706390292 27.826192668589883 22.198276893289233 52-53 22.272058751502584 27.81520928403603 27.683589349610905 22.229142614850485 54-55 22.25380214236562 27.723773273916585 27.713834946167204 22.308589637550593 56-57 22.310412101106593 27.79304023594818 27.663380502490554 22.23316716045467 58-59 22.14692894869045 27.982568314922457 27.742473372904687 22.128029363482405 60-61 22.309871873769783 27.89055717262269 27.659725935202335 22.1398450184052 62-63 22.320683621804253 28.021952238841248 27.49929119610527 22.158072943249227 64-65 22.233121064691083 27.944737809710528 27.51995925114523 22.302181874453154 66-67 22.353960762259394 27.978715277732825 27.331189332144373 22.33613462786341 68-69 22.22559348643265 27.902018953983372 27.512750708840944 22.359636850743033 70-71 22.258753447747473 27.71207238354275 27.50807467246399 22.521099496245785 72-73 22.3597582296215 27.77687273266331 27.35331765496084 22.51005138275435 74-75 22.220337304503953 27.917589368382334 27.444294442327212 22.417778884786504 76-77 22.369133743196535 27.85317258625496 27.32174457620357 22.45594909434493 78-79 22.28263822644175 27.82680866480239 27.317492280543977 22.573060828211887 80-81 22.4614682205335 27.805744993538738 27.24783443186197 22.484952354065786 82-83 22.309625140315863 27.871577372555684 27.401301324241317 22.417496162887137 84-85 22.497976031399695 27.86994100940704 27.27801095205866 22.354072007134604 86-87 22.348892244564908 27.89588510710242 27.31816518935311 22.43705745897956 88-89 22.3635660623184 27.878286164783223 27.319729332138188 22.438418440760188 90-91 22.384804614265764 27.9323149329956 27.30671784237838 22.376162610360257 92-93 22.48559654820578 27.860445596630562 27.356340557247165 22.297617297916496 94-95 22.281386450151036 27.958749324448807 27.456029517809412 22.30383470759075 96-97 22.323708659503396 28.03195200256749 27.554170305897053 22.090169032032065 98-99 23.517614984960595 29.908882440204426 27.635542560945353 18.937960013889626 100 22.395028856511335 30.89058473393341 21.57751734999985 25.136869059555405 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2001.0 1 1834.0 2 2496.0 3 3554.5 4 4952.0 5 8186.5 6 10950.0 7 12731.0 8 13877.0 9 13858.5 10 12799.5 11 11549.5 12 12308.0 13 16149.5 14 25138.5 15 37176.5 16 47557.5 17 54281.0 18 56042.0 19 53209.0 20 48059.5 21 42941.0 22 40823.0 23 43507.0 24 51295.5 25 63951.5 26 80749.0 27 99460.5 28 118112.5 29 138806.0 30 159730.0 31 181385.0 32 204527.0 33 225862.5 34 246932.0 35 266191.0 36 286382.0 37 305964.5 38 318924.5 39 326858.0 40 336526.0 41 347477.0 42 354417.0 43 362072.5 44 370407.0 45 375717.5 46 378750.0 47 379208.5 48 379633.5 49 377214.0 50 367783.0 51 356477.0 52 342911.5 53 324712.0 54 306419.5 55 285650.5 56 263106.0 57 239262.5 58 213402.5 59 185735.0 60 153816.5 61 124155.0 62 98369.5 63 74920.5 64 55085.0 65 40901.5 66 31035.5 67 23673.5 68 17959.0 69 12985.0 70 9175.0 71 6614.5 72 4684.0 73 3190.5 74 2115.0 75 1410.5 76 928.5 77 571.5 78 365.0 79 241.0 80 171.0 81 115.0 82 78.0 83 54.5 84 43.5 85 33.0 86 19.5 87 14.0 88 10.5 89 7.5 90 6.5 91 5.0 92 3.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.001856224643681332 4 0.013868951172959953 5 0.009186202640036592 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.001730158836493502 26-27 0.0368417764427075 28-29 0.08476076332620958 30-31 0.08222547946854294 32-33 0.03765212086658944 34-35 0.0014640180176060896 36-37 7.387860493515869 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 5.630780277493861E-6 56-57 5.667689212262046E-6 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011497009630812615 74-75 0.03500582010549816 76-77 0.004693993933519056 78-79 0.0 80-81 0.0 82-83 0.003543037216327703 84-85 0.04091773302397635 86-87 0.044737317757253064 88-89 0.012945306372575262 90-91 6.561885602448686E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 130.0 20-21 495.0 22-23 1167.0 24-25 3144.0 26-27 3980.0 28-29 6374.0 30-31 14999.0 32-33 19090.0 34-35 30889.0 36-37 35925.0 38-39 43466.0 40-41 51101.0 42-43 59755.0 44-45 72705.0 46-47 72267.0 48-49 64717.0 50-51 56046.0 52-53 51997.0 54-55 55862.0 56-57 62173.0 58-59 63438.0 60-61 65127.0 62-63 64744.0 64-65 67555.0 66-67 72556.0 68-69 71076.0 70-71 69364.0 72-73 67507.0 74-75 68581.0 76-77 67974.0 78-79 73313.0 80-81 74799.0 82-83 72745.0 84-85 73193.0 86-87 77344.0 88-89 83892.0 90-91 89984.0 92-93 97023.0 94-95 117380.0 96-97 330469.0 98-99 593288.0 100-101 6413977.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.89400621291183 #Duplication Level Percentage of deduplicated Percentage of total 1 90.20270339256795 77.47871565622675 2 6.9085273394345 11.868021804309164 3 1.6381474071559 4.221211307037429 4 0.5746758847447206 1.9744485605869455 5 0.26997383198681657 1.1594567000999616 6 0.1387711798796048 0.7151767552051128 7 0.07943796315161365 0.4776271430340035 8 0.045088461782737545 0.3098262893197677 9 0.034225727510078435 0.2645806366252894 >10 0.10624186308168787 1.3631811783125254 >50 0.0018141391025128322 0.10190643834897863 >100 3.7338522827227506E-4 0.05403499502896184 >500 1.9424373628081093E-5 0.011812535865173612 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1093461860015137E-5 0.0 0.0 0.0 3 0.0 2.1093461860015137E-5 0.0 1.0546730930007569E-5 0.0 4 0.0 4.2186923720030274E-5 0.0 1.0546730930007569E-5 0.0 5 0.0 6.328038558004542E-5 0.0 3.164019279002271E-5 0.0 6 4.2186923720030274E-5 6.328038558004542E-5 0.0 3.164019279002271E-5 0.0 7 4.2186923720030274E-5 6.328038558004542E-5 0.0 4.2186923720030274E-5 0.0 8 4.2186923720030274E-5 6.328038558004542E-5 0.0 5.2733654650037845E-5 1.0546730930007569E-5 9 4.2186923720030274E-5 1.7929442581012867E-4 0.0 1.371075020900984E-4 2.1093461860015137E-5 10-11 4.2186923720030274E-5 1.7929442581012867E-4 0.0 1.4765423302010597E-4 2.1093461860015137E-5 12-13 4.2186923720030274E-5 1.8456779127513245E-4 0.0 1.687476948801211E-4 2.1093461860015137E-5 14-15 4.2186923720030274E-5 2.6366827325018924E-4 0.0 2.2148134953015896E-4 3.164019279002271E-5 16-17 6.328038558004542E-5 2.742150041801968E-4 0.0 2.2148134953015896E-4 4.2186923720030274E-5 18-19 6.328038558004542E-5 2.9530846604021194E-4 0.0 2.3202808046016653E-4 4.2186923720030274E-5 20-21 6.328038558004542E-5 3.2694865883023464E-4 0.0 2.5839490778518546E-4 4.2186923720030274E-5 22-23 6.328038558004542E-5 3.691355825502649E-4 0.0 2.7948836964520056E-4 4.2186923720030274E-5 24-25 6.328038558004542E-5 4.3768933359531414E-4 0.0 3.1640192790022704E-4 4.2186923720030274E-5 26-27 6.328038558004542E-5 4.5878279545532924E-4 0.0 3.9022904441028005E-4 4.2186923720030274E-5 28-29 6.328038558004542E-5 4.6405616092033307E-4 0.0 6.433505867304617E-4 4.2186923720030274E-5 30-31 6.328038558004542E-5 4.956963537103557E-4 0.0 0.0020987994550715062 4.2186923720030274E-5 32-33 6.328038558004542E-5 4.956963537103557E-4 0.0 0.005542307103718978 4.2186923720030274E-5 34-35 7.382711651005299E-5 5.537033738253973E-4 0.0 0.009924473805137123 4.2186923720030274E-5 36-37 7.382711651005299E-5 6.11710393940439E-4 0.0 0.019448171834933956 4.2186923720030274E-5 38-39 7.382711651005299E-5 6.169837594054428E-4 0.0 0.043410344507911154 4.2186923720030274E-5 40-41 7.382711651005299E-5 6.749907795204844E-4 0.0 0.0680000476712238 4.2186923720030274E-5 42-43 7.382711651005299E-5 6.960842413804996E-4 0.0 0.08286566491706948 4.7460289185034056E-5 44-45 7.910048197505676E-5 7.910048197505677E-4 0.0 0.10231911011746844 5.800702011504163E-5 46-47 8.437384744006055E-5 8.648319362606207E-4 0.0 0.12227879840250777 6.855375104504921E-5 48-49 8.964721290506434E-5 8.648319362606207E-4 0.0 0.142080285723597 9.492057837006813E-5 50-51 1.1601404023008327E-4 9.755726110257002E-4 0.0 0.16007300869018987 9.492057837006813E-5 52-53 1.2656077116009084E-4 9.80845976490704E-4 0.0 0.20472259408237692 9.492057837006813E-5 54-55 1.2656077116009084E-4 9.80845976490704E-4 0.0 0.2576197230618299 9.492057837006813E-5 56-57 1.2656077116009084E-4 9.80845976490704E-4 0.0 0.3099051416473424 1.0019394383507191E-4 58-59 1.2656077116009084E-4 9.966660728857153E-4 0.0 0.34370741427801665 1.0546730930007569E-4 60-61 1.371075020900984E-4 0.001028306265675738 0.0 0.36779614772215397 1.0546730930007569E-4 62-63 1.371075020900984E-4 0.0010493997275357533 0.0 0.3860208987692071 1.1601404023008327E-4 64-65 1.371075020900984E-4 0.0011812338641608478 0.0 0.39257569204220677 1.1601404023008327E-4 66-67 1.4765423302010597E-4 0.0011917805950908554 0.0 0.3991199385842764 1.2128740569508705E-4 68-69 1.4765423302010597E-4 0.0012392408842758895 0.0 0.4049733742504307 1.2656077116009084E-4 70-71 1.4765423302010597E-4 0.0012656077116009082 0.0 0.40957174893591397 1.2656077116009084E-4 72-73 1.4765423302010597E-4 0.0012761544425309158 0.0 0.4132789248578116 1.2656077116009084E-4 74-75 1.4765423302010597E-4 0.0012867011734609235 0.0 0.4161687291326337 1.2656077116009084E-4 76-77 1.4765423302010597E-4 0.0013394348281109613 0.0 0.41892669927083065 1.3710750209009842E-4 78-79 1.4765423302010597E-4 0.001371075020900984 0.0 0.420751283721722 1.4765423302010597E-4 80-81 1.4765423302010597E-4 0.0013763483863659877 0.0 0.42134717401926736 1.5292759848510975E-4 82-83 1.4765423302010597E-4 0.0013816217518309915 0.0 0.4217690432564677 1.5820096395011355E-4 84-85 1.4765423302010597E-4 0.0013921684827609992 0.0 0.4220432582606479 1.5820096395011355E-4 86-87 1.4765423302010597E-4 0.001423808675551022 0.0 0.422180365762738 1.5820096395011355E-4 88 1.687476948801211E-4 0.001497635792061075 0.0 0.422185639128203 1.5820096395011355E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12175 0.0 48.185486 1 GTATCAA 22735 0.0 38.181202 1 ATCAACG 26800 0.0 31.785385 3 TCAACGC 26775 0.0 31.783049 4 CAACGCA 27410 0.0 30.994682 5 TATCAAC 28065 0.0 30.504608 2 AACGCAG 28215 0.0 30.197998 6 ACGCAGA 32415 0.0 26.245806 7 CGCAGAG 32660 0.0 26.00977 8 GCAGAGT 38575 0.0 22.010445 9 GTACATG 27560 0.0 21.503164 1 TACATGG 27740 0.0 20.88718 2 ACATGGG 27980 0.0 20.03756 3 GAGTACT 22915 0.0 19.856075 12-13 GTGGTAT 5970 0.0 19.496431 1 AGAGTAC 34915 0.0 19.196587 10-11 CAGAGTA 37820 0.0 18.837803 10-11 CATGGGG 21905 0.0 18.334631 4 GTACTTT 25950 0.0 17.468416 14-15 AGTACTT 25285 0.0 17.202654 12-13 >>END_MODULE