##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138921_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9608838 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.681764225809616 33.0 33.0 33.0 33.0 33.0 2 32.6865070469499 33.0 33.0 33.0 33.0 33.0 3 32.69819763846576 33.0 33.0 33.0 33.0 33.0 4 36.621406043061604 37.0 37.0 37.0 37.0 37.0 5 36.63297799380112 37.0 37.0 37.0 37.0 37.0 6 36.56794713367007 37.0 37.0 37.0 37.0 37.0 7 36.542476207841155 37.0 37.0 37.0 37.0 37.0 8 36.538120842499374 37.0 37.0 37.0 37.0 37.0 9 36.583921177565905 37.0 37.0 37.0 37.0 37.0 10-11 36.56166432403169 37.0 37.0 37.0 37.0 37.0 12-13 36.553660806853024 37.0 37.0 37.0 37.0 37.0 14-15 38.64163476374563 40.0 37.0 40.0 37.0 40.0 16-17 38.578374877378515 40.0 37.0 40.0 37.0 40.0 18-19 38.59753161620583 40.0 37.0 40.0 37.0 40.0 20-21 38.61404992853541 40.0 37.0 40.0 37.0 40.0 22-23 38.610138492162264 40.0 37.0 40.0 37.0 40.0 24-25 38.61251462745767 40.0 37.0 40.0 37.0 40.0 26-27 38.531019923628264 40.0 37.0 40.0 37.0 40.0 28-29 38.41611019727391 40.0 37.0 40.0 37.0 40.0 30-31 38.287186663499135 40.0 37.0 40.0 37.0 40.0 32-33 38.17905232429092 40.0 37.0 40.0 37.0 40.0 34-35 38.157286275432305 40.0 37.0 40.0 37.0 40.0 36-37 38.14274278708298 40.0 37.0 40.0 37.0 40.0 38-39 38.103400716276596 40.0 37.0 40.0 37.0 40.0 40-41 38.07966737128146 40.0 37.0 40.0 37.0 40.0 42-43 38.02920962759359 40.0 37.0 40.0 33.0 40.0 44-45 37.943104310500544 40.0 37.0 40.0 33.0 40.0 46-47 37.84577377246844 40.0 37.0 40.0 33.0 40.0 48-49 37.793308887914996 40.0 37.0 40.0 33.0 40.0 50-51 37.779643029109444 40.0 37.0 40.0 33.0 40.0 52-53 37.72929093266745 40.0 37.0 40.0 33.0 40.0 54-55 37.62256879631609 40.0 37.0 40.0 33.0 40.0 56-57 37.45824371481636 40.0 37.0 40.0 33.0 40.0 58-59 37.282686637200186 40.0 37.0 40.0 33.0 40.0 60-61 37.12579101712736 37.0 37.0 40.0 33.0 40.0 62-63 36.997544727793326 37.0 37.0 40.0 33.0 40.0 64-65 36.842729715290034 37.0 37.0 40.0 33.0 40.0 66-67 36.644946877027515 37.0 37.0 40.0 33.0 40.0 68-69 36.44950546000995 37.0 37.0 40.0 33.0 40.0 70-71 36.23172336668247 37.0 37.0 40.0 33.0 40.0 72-73 35.94109976113327 37.0 37.0 37.0 33.0 40.0 74-75 35.57512296333152 37.0 33.0 37.0 33.0 40.0 76-77 33.54354573929888 35.0 33.0 37.0 27.0 37.0 78-79 35.12477691291192 37.0 33.0 37.0 33.0 37.0 80-81 35.30179352127704 37.0 33.0 37.0 33.0 37.0 82-83 35.07704605044967 37.0 33.0 37.0 33.0 37.0 84-85 34.90252194940285 37.0 33.0 37.0 33.0 37.0 86-87 34.77958690210038 37.0 33.0 37.0 33.0 37.0 88-89 34.65539543862756 37.0 33.0 37.0 33.0 37.0 90-91 34.57246075812457 37.0 33.0 37.0 33.0 37.0 92-93 34.51802484130776 37.0 33.0 37.0 33.0 37.0 94-95 34.46608108871338 37.0 33.0 37.0 33.0 37.0 96-97 34.47840223497655 37.0 33.0 37.0 33.0 37.0 98-99 34.509763616910625 37.0 33.0 37.0 33.0 37.0 100 34.4524740149941 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 28.0 20 70.0 21 272.0 22 966.0 23 2918.0 24 7137.0 25 14744.0 26 26705.0 27 43141.0 28 66085.0 29 93896.0 30 130553.0 31 175378.0 32 235552.0 33 320799.0 34 448677.0 35 668108.0 36 1179523.0 37 2782018.0 38 3333004.0 39 79258.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.776439357183456 21.355266890752034 14.608238790163805 23.2600549619007 2 13.901571543719992 21.26783994305164 43.45771880810162 21.372869705126757 3 17.808546502957334 26.69361343990349 31.0910633242233 24.406776732915876 4 11.68362917555692 18.230279249166237 40.63090667154551 29.455184903731336 5 12.398398224634446 38.274170092158904 36.740654801340185 12.586776881866465 6 28.57724315885022 39.326909247507345 19.29208297611012 12.803764617532318 7 25.178892598668018 33.24639253986798 24.410922527781196 17.163792333682803 8 22.923063121680272 38.53848925333116 21.819828786789827 16.71861883819875 9 24.669996517789144 17.167216264859498 22.522431952750168 35.64035526460119 10-11 23.30718517014501 27.623682293156726 29.8664364340602 19.20269610263806 12-13 23.93886140649052 25.15952569531971 30.209207372475717 20.69240552571405 14-15 20.95230973818062 26.718761415272063 27.974542811524138 24.354386035023172 16-17 20.365761187773174 29.75304089838959 28.828667940910236 21.052529972927008 18-19 20.17443732530406 28.84314940058309 30.845014766613822 20.137398507499032 20-21 20.907907450932314 28.1065810960079 30.89162046104686 20.093890992012927 22-23 20.615242967380137 28.005877319337458 30.74812327903169 20.630756434250717 24-25 20.424524832655557 28.093161047450447 30.86557629725681 20.61673782263719 26-27 20.469672228197826 28.31301193354404 30.688666824743404 20.528649013514727 28-29 20.337813124470554 28.43108955149004 30.709702001394994 20.521395322644413 30-31 20.64015992472707 28.282185453669122 30.62368484498661 20.453969776617196 32-33 20.4164941842644 28.43872604680576 30.540358582945547 20.604421185984297 34-35 20.55437632990287 28.52040415427345 30.53863488973658 20.386584626087103 36-37 20.548934787250584 28.466362744561412 30.453886700602762 20.530815767585242 38-39 20.426102313885046 28.6430690696357 30.47045251761337 20.460376098865883 40-41 20.71516930036498 28.49598151797126 30.292165930279097 20.496683251384667 42-43 20.555518334216494 28.624178561555887 30.09600113523303 20.724301968994588 44-45 20.688181959428796 28.803939825502926 29.86484492976625 20.643033285302028 46-47 20.727218889087776 28.81936806632301 29.550939729309704 20.90247331527951 48-49 20.72658740230187 28.901208848075022 29.52917591850993 20.843027831113172 50-51 20.712639676737094 29.03931107516322 29.35075447168301 20.897294776416672 52-53 20.824118408637798 28.982678943386485 29.252925083670505 20.940277564305212 54-55 20.860989425293894 28.933583834060784 29.241068552301897 20.96435818834343 56-57 20.864411481364506 28.997603273035498 29.172802416546073 20.965182829053923 58-59 20.82347855664445 29.060831331856114 29.220116243437676 20.89557386806176 60-61 20.9230557858292 29.02409457638996 29.20182302156209 20.851026616218753 62-63 20.854774676416866 29.054393874072964 29.180678394512228 20.91015305499794 64-65 20.81763873776528 29.079097672935696 29.085892872984843 21.017370716314183 66-67 20.923847535279428 29.11752407214212 28.924546880885167 21.034081511693287 68-69 20.858836998604854 29.068479261051255 29.046187838708114 21.026495901635776 70-71 20.945157154700105 28.811711573226166 29.073378511866128 21.1697527602076 72-73 20.99135382544228 28.890172714095108 29.007775651662854 21.110697808799763 74-75 20.879203221895047 29.056544874152866 28.940480358062054 21.123771545890026 76-77 20.993417959399196 29.01853615541113 28.82586851356547 21.1621773716242 78-79 21.050305964360565 28.977186833607462 28.799527201953897 21.172980000078077 80-81 20.947092184566262 29.01496693688866 28.822512503608483 21.215428374936597 82-83 21.086492747373782 28.963384072733817 28.902641666632118 21.047481513260283 84-85 21.2006523328692 28.959939070699114 28.789610851206643 21.049797745225042 86-87 21.014881111608368 29.01689366938866 28.837453412641235 21.13077180636174 88-89 21.11360751234886 28.98555333417509 28.823889948456145 21.07694920501991 90-91 21.164323981171123 28.99854426128362 28.810650270240757 21.0264814873045 92-93 21.218736398974052 28.97007247928932 28.782879485302782 21.028311636433845 94-95 21.001564237294332 29.06769746292325 28.847877275033305 21.082861024749118 96-97 21.072314858008927 29.180404776342368 28.952217441422373 20.795062924226336 98-99 22.182996624925316 31.041689655980605 29.15984170481557 17.61547201427851 100 21.229921864725256 31.99709737627835 23.094294815747435 23.678685943248958 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3342.0 1 2807.5 2 3337.0 3 4825.5 4 6524.0 5 10507.0 6 14146.5 7 16891.5 8 18818.5 9 18692.0 10 16915.5 11 14735.0 12 15104.0 13 18902.5 14 28660.0 15 42821.0 16 54558.0 17 61876.5 18 64852.5 19 63451.0 20 59608.0 21 55646.5 22 54180.0 23 57555.0 24 66634.5 25 81239.5 26 100397.5 27 122505.0 28 145572.0 29 170948.5 30 196487.5 31 220975.5 32 246567.5 33 271858.5 34 298578.5 35 323114.5 36 348487.0 37 372178.0 38 384470.5 39 391366.0 40 401559.5 41 409423.5 42 410227.0 43 413134.5 44 415898.5 45 415329.5 46 410479.0 47 401252.0 48 389744.0 49 370638.5 50 347075.5 51 320425.5 52 287367.0 53 254750.0 54 222963.0 55 191206.0 56 163207.5 57 137276.0 58 115405.0 59 97496.5 60 78140.0 61 60414.0 62 45974.5 63 33820.0 64 24751.0 65 17972.0 66 13335.0 67 9987.5 68 7545.0 69 5464.0 70 3859.0 71 2882.0 72 2141.5 73 1467.0 74 1004.5 75 701.5 76 486.0 77 342.0 78 258.5 79 185.0 80 120.0 81 79.5 82 52.5 83 35.5 84 29.5 85 23.5 86 16.5 87 13.0 88 9.0 89 5.5 90 4.0 91 3.5 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013841423905783406 3 1.977346272254772E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.203542821723084E-5 12-13 0.00695193320982204 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.5612342618479207E-5 24-25 3.383286958011743E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.762224428164705E-4 36-37 0.02504802755587918 38-39 0.12164251088312251 40-41 0.143400545469018 42-43 0.03166728721161284 44-45 0.002253349396828381 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.007169642257576045 64-65 0.07437153566075697 66-67 0.18215919348668969 68-69 0.1890753684764463 70-71 0.06972374927405152 72-73 0.002235076394911178 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 132.0 20-21 628.0 22-23 1424.0 24-25 2800.0 26-27 4372.0 28-29 7752.0 30-31 17982.0 32-33 22102.0 34-35 30104.0 36-37 43096.0 38-39 49608.0 40-41 53224.0 42-43 60893.0 44-45 70444.0 46-47 69795.0 48-49 60766.0 50-51 51906.0 52-53 47254.0 54-55 50621.0 56-57 51133.0 58-59 50471.0 60-61 48251.0 62-63 52352.0 64-65 55439.0 66-67 63504.0 68-69 62561.0 70-71 64121.0 72-73 60440.0 74-75 60168.0 76-77 55526.0 78-79 60445.0 80-81 63967.0 82-83 62250.0 84-85 69167.0 86-87 76933.0 88-89 82711.0 90-91 88431.0 92-93 94533.0 94-95 115046.0 96-97 313282.0 98-99 614437.0 100-101 6698767.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.65891589078596 #Duplication Level Percentage of deduplicated Percentage of total 1 86.89858926262045 70.09146002361659 2 8.596359303169532 13.867460440026532 3 2.3734091326013087 5.743098228027367 4 0.9433760800253871 3.0436676756858825 5 0.4719788501665007 1.9034651188904825 6 0.23531518168984192 1.1388160468647586 7 0.14774222267735881 0.8341709258715598 8 0.09328106548616151 0.6019159692200958 9 0.055307593639525816 0.4014945489143054 >10 0.18202897458364348 2.1295069813766982 >50 0.00199436042082833 0.11181718016524567 >100 5.243322166255705E-4 0.0774427291281276 >500 9.364070272561781E-5 0.0556841322123207 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0407085643446169E-5 0.0 0.0 0.0 3 0.0 1.0407085643446169E-5 0.0 0.0 0.0 4 0.0 6.244251386067701E-5 0.0 1.0407085643446169E-5 0.0 5 0.0 6.244251386067701E-5 0.0 1.0407085643446169E-5 0.0 6 0.0 6.244251386067701E-5 0.0 1.0407085643446169E-5 0.0 7 0.0 7.284959950412318E-5 0.0 1.0407085643446169E-5 0.0 8 0.0 1.1447794207790785E-4 0.0 1.0407085643446169E-5 1.0407085643446169E-5 9 0.0 2.601771410861542E-4 0.0 1.0407085643446169E-5 1.0407085643446169E-5 10-11 0.0 2.705842267296004E-4 0.0 3.642479975206159E-5 3.122125693033851E-5 12-13 0.0 2.705842267296004E-4 0.0 4.1628342573784676E-5 3.122125693033851E-5 14-15 0.0 3.8506216880750826E-4 0.0 5.7238971038953926E-5 3.122125693033851E-5 16-17 0.0 4.058763400944006E-4 0.0 8.325668514756935E-5 7.284959950412318E-5 18-19 0.0 4.839294824202469E-4 0.0 9.366377079101551E-5 9.366377079101551E-5 20-21 0.0 5.775932532112623E-4 0.0 1.2488502772135403E-4 1.1447794207790785E-4 22-23 0.0 6.400357670719393E-4 0.0 1.5610628465169253E-4 1.1447794207790785E-4 24-25 0.0 7.336995378629549E-4 0.0 1.9253108440375413E-4 1.2488502772135403E-4 26-27 0.0 7.701243376150165E-4 0.0 2.289558841558157E-4 1.4569919900824635E-4 28-29 0.0 7.701243376150165E-4 0.0 5.880003388547086E-4 1.7171691311686178E-4 30-31 0.0 9.522483363753245E-4 0.0 0.0019253108440375412 1.7692045593858488E-4 32-33 0.0 9.7826605048394E-4 0.0 0.004906940880884869 1.8212399876030796E-4 34-35 0.0 0.001108354621027017 0.0 0.008820005082820628 1.8732754158203103E-4 36-37 0.0 0.001238443191570094 0.0 0.015569000122595468 1.8732754158203103E-4 38-39 0.0 0.0012592573628569864 0.0 0.03210585921003144 1.8732754158203103E-4 40-41 0.0 0.0013945494762217868 0.0 0.05012572800165847 1.9253108440375413E-4 42-43 0.0 0.0014205671903304022 0.0 0.06147985843865824 2.0814171286892338E-4 44-45 0.0 0.0016339124460210486 0.0 0.07365614864149025 2.1854879851236956E-4 46-47 0.0 0.0018264435304248027 0.0 0.08516118182032001 2.1854879851236956E-4 48-49 1.0407085643446169E-5 0.001842054158889972 0.0 0.09722299408107411 2.2375234133409263E-4 50-51 1.0407085643446169E-5 0.0020606029574023414 0.0 0.10926919571336305 2.3936296979926188E-4 52-53 1.0407085643446169E-5 0.00209182421433268 0.0 0.13736312340784598 2.3936296979926188E-4 54-55 1.0407085643446169E-5 0.0021126383856195723 0.0 0.1694689826178774 2.44566512620985E-4 56-57 1.0407085643446169E-5 0.0021230454712630187 0.0 0.19995654001035296 2.5497359826443113E-4 58-59 1.0407085643446169E-5 0.0021282490140847416 0.0 0.21898069256657257 2.601771410861542E-4 60-61 1.0407085643446169E-5 0.0021594702710150803 0.0 0.2343155332621905 2.8099131237304656E-4 62-63 1.0407085643446169E-5 0.002206302156410588 0.0 0.24657508015017007 2.8099131237304656E-4 64-65 1.0407085643446169E-5 0.0023624084410622803 0.0 0.2503632593243845 2.8099131237304656E-4 66-67 1.0407085643446169E-5 0.002388426155170896 0.0 0.25430234124042883 2.8099131237304656E-4 68-69 1.0407085643446169E-5 0.0024352580405664036 0.0 0.25839752944112493 2.966019408382158E-4 70-71 1.0407085643446169E-5 0.0024612757546750193 0.0 0.26219091215816104 3.018054836599389E-4 72-73 1.0407085643446169E-5 0.0024664792974967422 0.0 0.2651725421950084 3.1221256930338506E-4 74-75 1.0407085643446169E-5 0.0025549395254660344 0.0 0.2675245435504272 3.2261965494683126E-4 76-77 1.0407085643446169E-5 0.0026329926677918806 0.0 0.26963197839322506 3.2782319776855434E-4 78-79 1.0407085643446169E-5 0.002653806839078773 0.0 0.2710785632976641 3.382302834120005E-4 80-81 1.0407085643446169E-5 0.0026642139247222193 0.0 0.2715416786087974 3.4863736905544663E-4 82-83 1.0407085643446169E-5 0.0026694174675439422 0.0 0.27200999746275256 3.642479975206159E-4 84-85 1.0407085643446169E-5 0.002695435181652558 0.0 0.2722233427184432 3.642479975206159E-4 86-87 1.0407085643446169E-5 0.0027474706098697885 0.0 0.27229619231794727 3.8506216880750826E-4 88 1.0407085643446169E-5 0.0028723556375911427 0.0 0.27231180294641244 3.8506216880750826E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13535 0.0 47.1493 1 GTATCAA 24325 0.0 35.265514 1 ATCAACG 28135 0.0 29.609936 3 TCAACGC 28305 0.0 29.447433 4 CAACGCA 28690 0.0 29.007029 5 AACGCAG 29520 0.0 28.313814 6 TATCAAC 30530 0.0 27.65725 2 ACGCAGA 33500 0.0 24.898249 7 CGCAGAG 33660 0.0 24.779898 8 GTACATG 25285 0.0 21.684858 1 TACATGG 25035 0.0 21.329157 2 GCAGAGT 39030 0.0 21.314896 9 ACATGGG 24380 0.0 21.011534 3 GTGGTAT 6890 0.0 19.973595 1 TGGTATC 6475 0.0 19.644636 2 GAGTACT 27920 0.0 19.437592 12-13 AGAGTAC 35960 0.0 19.355309 10-11 CATGGGG 16605 0.0 18.849758 4 CAGAGTA 38905 0.0 18.79974 10-11 AGTACTT 29905 0.0 17.755402 12-13 >>END_MODULE