##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138920_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7548525 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69379673512375 33.0 33.0 33.0 33.0 33.0 2 32.69318191302274 33.0 33.0 33.0 33.0 33.0 3 32.70030012485883 33.0 33.0 33.0 33.0 33.0 4 36.629260948330966 37.0 37.0 37.0 37.0 37.0 5 36.643484786762976 37.0 37.0 37.0 37.0 37.0 6 36.58718835799047 37.0 37.0 37.0 37.0 37.0 7 36.562916331336254 37.0 37.0 37.0 37.0 37.0 8 36.56276279140627 37.0 37.0 37.0 37.0 37.0 9 36.601312574310874 37.0 37.0 37.0 37.0 37.0 10-11 36.58110061237129 37.0 37.0 37.0 37.0 37.0 12-13 36.57136785001043 37.0 37.0 37.0 37.0 37.0 14-15 38.65886527500406 40.0 37.0 40.0 37.0 40.0 16-17 38.597802418353254 40.0 37.0 40.0 37.0 40.0 18-19 38.63077024981702 40.0 37.0 40.0 37.0 40.0 20-21 38.648559711299896 40.0 37.0 40.0 37.0 40.0 22-23 38.64284230270242 40.0 37.0 40.0 37.0 40.0 24-25 38.641851217102555 40.0 37.0 40.0 37.0 40.0 26-27 38.55481238929957 40.0 37.0 40.0 37.0 40.0 28-29 38.44272908991358 40.0 37.0 40.0 37.0 40.0 30-31 38.2949111322552 40.0 37.0 40.0 37.0 40.0 32-33 38.18022035466038 40.0 37.0 40.0 37.0 40.0 34-35 38.157840823969366 40.0 37.0 40.0 37.0 40.0 36-37 38.140883195851444 40.0 37.0 40.0 37.0 40.0 38-39 38.093757985581874 40.0 37.0 40.0 37.0 40.0 40-41 38.06390108343035 40.0 37.0 40.0 37.0 40.0 42-43 38.0060767412636 40.0 37.0 40.0 33.0 40.0 44-45 37.907863530547324 40.0 37.0 40.0 33.0 40.0 46-47 37.79456088066596 40.0 37.0 40.0 33.0 40.0 48-49 37.726190607008085 40.0 37.0 40.0 33.0 40.0 50-51 37.70464634115601 40.0 37.0 40.0 33.0 40.0 52-53 37.64561476285032 40.0 37.0 40.0 33.0 40.0 54-55 37.530013654706465 40.0 37.0 40.0 33.0 40.0 56-57 37.34903056510482 40.0 37.0 40.0 33.0 40.0 58-59 37.159251705137585 37.0 37.0 40.0 33.0 40.0 60-61 36.98382411105186 37.0 37.0 40.0 33.0 40.0 62-63 36.84239968913654 37.0 37.0 40.0 33.0 40.0 64-65 36.67307504295671 37.0 37.0 40.0 33.0 40.0 66-67 36.460228284828254 37.0 37.0 40.0 33.0 40.0 68-69 36.26018480576072 37.0 37.0 40.0 33.0 40.0 70-71 36.03811709285249 37.0 37.0 38.5 33.0 40.0 72-73 35.75099376604658 37.0 35.0 37.0 33.0 40.0 74-75 35.38645422025787 37.0 33.0 37.0 33.0 40.0 76-77 33.29584715915559 35.0 33.0 37.0 27.0 37.0 78-79 34.939783482781806 37.0 33.0 37.0 33.0 37.0 80-81 35.16003056794429 37.0 33.0 37.0 33.0 37.0 82-83 34.96010136754626 37.0 33.0 37.0 33.0 37.0 84-85 34.80828574334224 37.0 33.0 37.0 33.0 37.0 86-87 34.71492981891143 37.0 33.0 37.0 33.0 37.0 88-89 34.61380390912761 37.0 33.0 37.0 33.0 37.0 90-91 34.54198165908713 37.0 33.0 37.0 33.0 37.0 92-93 34.49950621517266 37.0 33.0 37.0 33.0 37.0 94-95 34.45820002336113 37.0 33.0 37.0 33.0 37.0 96-97 34.47297424527257 37.0 33.0 37.0 33.0 37.0 98-99 34.50840536037663 37.0 33.0 37.0 33.0 37.0 100 34.46119870932553 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 1.0 19 17.0 20 45.0 21 232.0 22 843.0 23 2309.0 24 5745.0 25 11508.0 26 20843.0 27 34261.0 28 51845.0 29 73823.0 30 102366.0 31 137688.0 32 185087.0 33 251591.0 34 352968.0 35 530145.0 36 972482.0 37 2320818.0 38 2430897.0 39 63007.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.807391749698354 20.792329732276137 14.50080836995418 22.899470148071334 2 14.550379610198238 21.021286494980856 42.68603377059591 21.742300124224982 3 17.848591981709784 27.10658265722923 30.819709354830888 24.2251160062301 4 11.998001198644927 18.090490273330257 39.85267848389963 30.058830044125184 5 12.749419621637289 38.42347192643224 35.6999593562927 13.127149095637769 6 28.80156056978019 38.60420413259544 19.23263154059899 13.361603757025378 7 25.877797318019084 33.358649537492425 23.69979565544262 17.063757489045873 8 24.2996082016023 36.65554528864911 21.380163674360222 17.66468283538837 9 25.95700484531746 16.545232346716745 21.76531176620598 35.732451041759816 10-11 24.04620904289548 26.96379986944465 29.05677899218026 19.933212095479615 12-13 25.041454909670957 24.724945548201102 29.29650528089709 20.937094261230847 14-15 22.127091054212578 25.759621912890267 27.54595765397876 24.567329378918398 16-17 20.975018298276815 28.691512580272306 28.370039179839768 21.96342994161111 18-19 20.782325023762922 27.70119327948175 30.734507734954843 20.781973961800485 20-21 21.820896805660002 26.889027388885932 30.625069593157328 20.66500621229674 22-23 21.512823250962942 26.92301067769555 30.4605272920372 21.10363877930431 24-25 21.186863262499802 27.038285514151887 30.76203832328061 21.0128129000677 26-27 21.082026947413684 27.2924730816489 30.464357835800293 21.16114213513712 28-29 20.953148417908057 27.48798917555303 30.4748646529671 21.083997753571815 30-31 21.30683930745386 27.284879341957936 30.323904644240436 21.084376706347776 32-33 21.041366083612058 27.495381633686698 30.21090251168331 21.252349771017926 34-35 21.291351519866346 27.54434571051106 30.22958224665186 20.934720522970736 36-37 21.297475747736687 27.414664837547853 30.190102870858095 21.09775654385737 38-39 21.127095297319755 27.570121300742752 30.21981362387863 21.08296977805887 40-41 21.34473946574985 27.460591472183744 30.08751071559092 21.10715834647549 42-43 21.33260794599939 27.614921409831204 29.624189426272746 21.428281217896657 44-45 21.320362424731996 27.93702757135246 29.315519763229375 21.427090240686177 46-47 21.511775263480953 27.905493443879426 28.932923333766713 21.649807958872913 48-49 21.624280180586485 28.0539863600342 28.694102724775234 21.627630734604082 50-51 21.570572857730514 28.0767830869778 28.536035556245494 21.816608499046193 52-53 21.64214170576723 28.051880929089407 28.312821685014182 21.99315568012918 54-55 21.733298424768808 27.982237316074787 28.339139691656662 21.945324567499743 56-57 21.77167580948361 28.028288775888004 28.2523453248219 21.94769008980649 58-59 21.705993965342433 28.0423700136099 28.472031816093317 21.779604204954346 60-61 21.76846923200197 28.24184846088797 28.288120432373304 21.701561874736758 62-63 21.79817359305602 28.060659652327953 28.273358878071814 21.867807876544212 64-65 21.760155101978917 28.095132472511263 28.15056599987176 21.994146425638057 66-67 21.732583895358548 28.228673472338055 27.982705140286978 22.05603749201642 68-69 21.752538998513142 28.148944679053546 28.044045608969626 22.054470713463683 70-71 21.920477165728695 27.729619188822795 28.081408730376197 22.268494915072313 72-73 21.917825134119614 27.924411294463138 28.05531435637829 22.10244921503896 74-75 21.899017893150084 28.04692153223378 27.96123394434784 22.092826630268288 76-77 21.962500849777104 27.934943858835492 27.93074541671362 22.171809874673787 78-79 21.881790400018783 27.97066085466206 27.89131447040456 22.2562342749146 80-81 21.841610862933624 27.92054367745587 27.977128038783196 22.260717420827312 82-83 22.265735553175283 27.735795988445794 28.061503839862006 21.936964618516914 84-85 22.28778567800505 27.867315596135484 27.756176866358214 22.088721859501252 86-87 21.99933524030265 27.9796965675774 27.928174025976777 22.09279416614317 88-89 22.287965286298725 27.702217098681587 27.84906486907689 22.1607527459428 90-91 22.300656038623025 27.693913413403326 27.90464710259154 22.100783445382106 92-93 22.477377889457976 27.577236125419358 27.849050900194012 22.096335084928654 94-95 22.10099901495379 27.619049095398946 28.03109259864973 22.248859290997533 96-97 22.19963588981688 27.811431822977028 28.08384688399087 21.905085403215224 98-99 23.220196926773067 29.663432131668184 28.27796409277916 18.83840684877959 100 22.34571021634889 30.35456813075406 22.08275585593032 25.216965796966733 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1887.0 1 1885.5 2 3336.0 3 5084.5 4 6907.0 5 11608.5 6 15521.5 7 17879.0 8 19162.5 9 18338.0 10 16167.0 11 13946.5 12 15013.5 13 20312.5 14 32365.5 15 48957.5 16 62613.5 17 70008.5 18 70370.0 19 65290.0 20 57113.0 21 47891.0 22 41174.5 23 39398.0 24 42081.0 25 48553.0 26 59439.5 27 72383.0 28 83832.5 29 99417.0 30 116462.5 31 132769.0 32 154225.0 33 175338.0 34 195667.0 35 215964.0 36 237495.5 37 261554.0 38 275558.5 39 281240.5 40 288693.0 41 292218.0 42 293431.0 43 302373.0 44 315871.0 45 328653.5 46 334798.5 47 334424.0 48 331334.5 49 323440.0 50 308149.5 51 289547.5 52 270739.0 53 248260.0 54 226156.5 55 200628.0 56 172746.5 57 146696.5 58 125269.0 59 106497.0 60 82820.5 61 62095.0 62 47617.5 63 35164.5 64 24930.5 65 17581.5 66 12777.0 67 10044.5 68 7947.5 69 6218.5 70 4656.5 71 2764.0 72 1821.5 73 1294.0 74 858.0 75 581.5 76 389.0 77 232.0 78 128.0 79 92.0 80 71.5 81 61.0 82 51.0 83 36.5 84 29.5 85 25.5 86 19.5 87 16.5 88 14.0 89 13.0 90 11.0 91 7.0 92 3.5 93 1.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.3247621224013964E-5 2 0.0016427050317777312 3 1.0598096979211171E-4 4 1.3247621224013964E-5 5 1.3247621224013964E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 3.311905306003491E-5 12-13 0.0074849059915678895 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 6.624537698356048E-6 24-25 3.5116056246911197E-4 26-27 0.0 28-29 1.3262651359179722E-5 30-31 1.3278969233292233E-5 32-33 1.3307493729176266E-5 34-35 5.804051227756974E-4 36-37 0.025017231563833373 38-39 0.12198726883543681 40-41 0.1448759610285693 42-43 0.03147284548608572 44-45 0.002098305474328124 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.007307488379742942 64-65 0.07558419409815073 66-67 0.18537508055028362 68-69 0.19287228186886018 70-71 0.07248827777610767 72-73 0.00249238583748623 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 486.0 22-23 1083.0 24-25 2070.0 26-27 3347.0 28-29 7094.0 30-31 15420.0 32-33 18652.0 34-35 24037.0 36-37 31997.0 38-39 37079.0 40-41 45315.0 42-43 54609.0 44-45 64196.0 46-47 65786.0 48-49 53688.0 50-51 43888.0 52-53 39782.0 54-55 40200.0 56-57 41809.0 58-59 47160.0 60-61 48639.0 62-63 51906.0 64-65 53964.0 66-67 61977.0 68-69 59260.0 70-71 60204.0 72-73 61187.0 74-75 57658.0 76-77 52713.0 78-79 57347.0 80-81 62660.0 82-83 60231.0 84-85 65838.0 86-87 74119.0 88-89 81587.0 90-91 84926.0 92-93 88179.0 94-95 97626.0 96-97 249209.0 98-99 472628.0 100-101 5008854.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.48496251980278 #Duplication Level Percentage of deduplicated Percentage of total 1 85.63092110571768 65.49477791307005 2 8.741610972885459 13.37203575247682 3 2.686431020401537 6.164147277223413 4 1.1871736291336634 3.6320372211514593 5 0.6124371825252386 2.3421117475588242 6 0.3531458097652283 1.6206206414351332 7 0.207184276209427 1.1092537120399344 8 0.13531446752077267 0.8279617581370694 9 0.1029083894787469 0.70838498810297 >10 0.3349587033680358 3.9032667785380184 >50 0.005667333540936819 0.2841449369755864 >100 0.001817336864246043 0.2678590353603343 >500 3.125618846026013E-4 0.16656703323145422 >1k 1.172107044709024E-4 0.10683120469898841 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 9.273334856809775E-5 0.0 0.0 0.0 0.0 3 9.273334856809775E-5 0.0 0.0 0.0 0.0 4 9.273334856809775E-5 0.0 0.0 0.0 0.0 5 2.2520956080823736E-4 0.0 0.0 0.0 0.0 6 3.179429093763351E-4 0.0 0.0 0.0 0.0 7 6.623810612006981E-4 0.0 0.0 0.0 0.0 8 7.0212392487274E-4 0.0 0.0 0.0 0.0 9 7.0212392487274E-4 0.0 0.0 1.3247621224013962E-5 0.0 10-11 7.15371546096754E-4 0.0 0.0 1.3247621224013962E-5 0.0 12-13 9.405811069049914E-4 0.0 0.0 1.3247621224013962E-5 0.0 14-15 0.0013048906905653752 0.0 0.0 2.6495242448027925E-5 0.0 16-17 0.00140424784974548 0.0 0.0 3.974286367204189E-5 0.0 18-19 0.0017023193272857943 0.0 0.0 6.623810612006982E-5 0.0 20-21 0.0018546669713619549 0.0 0.0 1.457238334641536E-4 0.0 22-23 0.0019407765093180456 0.0 0.0 4.8353817467650963E-4 0.0 24-25 0.0024243146839945553 0.0 0.0 0.0013048906905653752 0.0 26-27 0.002437562305218569 0.0 0.0 0.002861486184387016 0.0 28-29 0.003212548146823386 0.0 0.0 0.007816096522168239 0.0 30-31 0.003537114866811728 0.0 0.0 0.009995330213518536 0.0 32-33 0.003570233919871763 0.0 0.0 0.01465849288437145 0.0 34-35 0.0038484339655760562 0.0 0.0 0.01978532229806485 0.0 36-37 0.004252486412908482 0.0 0.0 0.027369585448812846 0.0 38-39 0.004636667428404887 0.0 0.0 0.048837355642327475 0.0 40-41 0.004709529345136964 0.0 0.0 0.0717292451174236 0.0 42-43 0.005246058004709529 0.0 0.0 0.08597706174385061 0.0 44-45 0.0058289533385661434 0.0 0.0 0.10224514060693976 0.0 46-47 0.006716543960575079 0.0 0.0 0.11822839561371262 0.0 48-49 0.007094101165459477 0.0 0.0 0.135682136576351 0.0 50-51 0.007100724976071484 0.0 0.0 0.15196346306066416 0.0 52-53 0.007100724976071484 0.0 0.0 0.20534475278282843 0.0 54-55 0.007173586892803561 0.0 0.0 0.2695493490450121 0.0 56-57 0.007590886961360001 0.0 0.0 0.324480610450386 0.0 58-59 0.007630629825032043 0.0 0.0 0.3450607900218917 0.0 60-61 0.007690244120540105 0.0 0.0 0.3601564544066556 0.0 62-63 0.007743234605436161 0.0 0.0 0.3714434276895155 0.0 64-65 0.00785583938584028 0.0 0.0 0.37594099509506823 0.0 66-67 0.0082532680225607 0.0 0.0 0.3805577910916371 0.0 68-69 0.008478477583368936 0.0 0.0 0.3850089918229058 0.0 70-71 0.008743430007849214 0.0 0.0 0.3891025067811261 0.0 72-73 0.00897526337926946 0.0 0.0 0.3925800073524298 0.0 74-75 0.009101115780897593 0.0 0.0 0.39576606025680516 0.0 76-77 0.00917397769762967 0.0 0.0 0.39826986066814374 0.0 78-79 0.009253463424973754 0.0 0.0 0.3997734656770694 0.0 80-81 0.010266906448610821 0.0 0.0 0.40042922292765804 0.0 82-83 0.010419254092686982 0.0 0.0 0.4010982277994708 0.0 84-85 0.01064446365349522 0.0 0.0 0.401383051655787 0.0 86-87 0.010876297024915464 0.0 0.0 0.4014956564361912 0.0 88 0.010916039888587506 0.0 0.0 0.4015089040574152 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14070 0.0 52.467876 1 GTATCAA 26130 0.0 38.491 1 ATCAACG 32260 0.0 30.644304 3 CAACGCA 32605 0.0 30.346395 5 TCAACGC 32770 0.0 30.206701 4 TATCAAC 33200 0.0 30.035568 2 AACGCAG 33660 0.0 29.541075 6 ACGCAGA 37770 0.0 26.23554 7 CGCAGAG 38105 0.0 25.982344 8 GCAGAGT 43815 0.0 22.488474 9 TACATGG 29285 0.0 22.407318 2 TGGTATC 5725 0.0 21.753756 2 GTACATG 30925 0.0 21.732834 1 ACATGGG 29285 0.0 21.556633 3 GTGGTAT 6120 0.0 21.472456 1 GAGTACT 28115 0.0 20.76015 12-13 CAGAGTA 42365 0.0 20.272327 10-11 AGAGTAC 41150 0.0 19.42 10-11 GTACTTT 30675 0.0 19.047844 14-15 CATGGGG 18350 0.0 18.582037 4 >>END_MODULE