##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138919_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11850835 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67882896015344 33.0 33.0 33.0 33.0 33.0 2 32.682993898742154 33.0 33.0 33.0 33.0 33.0 3 32.69479585193786 33.0 33.0 33.0 33.0 33.0 4 36.6173793660953 37.0 37.0 37.0 37.0 37.0 5 36.62692249111561 37.0 37.0 37.0 37.0 37.0 6 36.57052384916337 37.0 37.0 37.0 37.0 37.0 7 36.54506589620056 37.0 37.0 37.0 37.0 37.0 8 36.54221116064817 37.0 37.0 37.0 37.0 37.0 9 36.58355736114797 37.0 37.0 37.0 37.0 37.0 10-11 36.564039706906726 37.0 37.0 37.0 37.0 37.0 12-13 36.55516547990078 37.0 37.0 37.0 37.0 37.0 14-15 38.643959813802155 40.0 37.0 40.0 37.0 40.0 16-17 38.581345322924506 40.0 37.0 40.0 37.0 40.0 18-19 38.59959859368559 40.0 37.0 40.0 37.0 40.0 20-21 38.61259016405332 40.0 37.0 40.0 37.0 40.0 22-23 38.60969446677838 40.0 37.0 40.0 37.0 40.0 24-25 38.6122929927427 40.0 37.0 40.0 37.0 40.0 26-27 38.527664475163434 40.0 37.0 40.0 37.0 40.0 28-29 38.41367885669558 40.0 37.0 40.0 37.0 40.0 30-31 38.28202832931835 40.0 37.0 40.0 37.0 40.0 32-33 38.171241063398654 40.0 37.0 40.0 37.0 40.0 34-35 38.146498254207636 40.0 37.0 40.0 37.0 40.0 36-37 38.128031072670574 40.0 37.0 40.0 37.0 40.0 38-39 38.084839782671395 40.0 37.0 40.0 37.0 40.0 40-41 38.056941748553 40.0 37.0 40.0 37.0 40.0 42-43 38.00093345361197 40.0 37.0 40.0 33.0 40.0 44-45 37.90347146105435 40.0 37.0 40.0 33.0 40.0 46-47 37.79836189082158 40.0 37.0 40.0 33.0 40.0 48-49 37.73910307385143 40.0 37.0 40.0 33.0 40.0 50-51 37.718395939573846 40.0 37.0 40.0 33.0 40.0 52-53 37.658828521953154 40.0 37.0 40.0 33.0 40.0 54-55 37.547460160023704 40.0 37.0 40.0 33.0 40.0 56-57 37.37507979551198 40.0 37.0 40.0 33.0 40.0 58-59 37.190669139503626 38.5 37.0 40.0 33.0 40.0 60-61 37.02345421861655 37.0 37.0 40.0 33.0 40.0 62-63 36.88549701932457 37.0 37.0 40.0 33.0 40.0 64-65 36.718002090570636 37.0 37.0 40.0 33.0 40.0 66-67 36.50795835451278 37.0 37.0 40.0 33.0 40.0 68-69 36.30372314802999 37.0 37.0 40.0 33.0 40.0 70-71 36.076081659782965 37.0 37.0 38.5 33.0 40.0 72-73 35.782343614605765 37.0 35.0 37.0 33.0 40.0 74-75 35.41595169581591 37.0 33.0 37.0 33.0 40.0 76-77 33.34736434162498 35.0 33.0 37.0 27.0 37.0 78-79 34.971664109376874 37.0 33.0 37.0 33.0 37.0 80-81 35.17204197612676 37.0 33.0 37.0 33.0 37.0 82-83 34.96379063938045 37.0 33.0 37.0 33.0 37.0 84-85 34.80468714662806 37.0 33.0 37.0 33.0 37.0 86-87 34.69455710508245 37.0 33.0 37.0 33.0 37.0 88-89 34.57832110935858 37.0 33.0 37.0 33.0 37.0 90-91 34.501458649394074 37.0 33.0 37.0 33.0 37.0 92-93 34.457424782735785 37.0 33.0 37.0 33.0 37.0 94-95 34.408992176472736 37.0 33.0 37.0 33.0 37.0 96-97 34.42316103488774 37.0 33.0 37.0 33.0 37.0 98-99 34.472939989218844 37.0 33.0 37.0 33.0 37.0 100 34.45529687996397 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 2.0 18 5.0 19 17.0 20 75.0 21 333.0 22 1292.0 23 3831.0 24 9479.0 25 19366.0 26 34827.0 27 56622.0 28 85103.0 29 121373.0 30 167220.0 31 225573.0 32 301330.0 33 406681.0 34 567522.0 35 847654.0 36 1516110.0 37 3599000.0 38 3801720.0 39 85699.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.30235548803101 20.710312817620025 14.788333480299068 23.198998214049897 2 14.304969417695782 20.87585282285081 43.042124968060804 21.777052791392602 3 18.21103747722521 26.11965210182853 30.65188547226758 25.017424948678674 4 12.297741045251241 17.863019778775083 39.603462540825184 30.235776635148493 5 13.0891367570302 37.74822617984302 35.98992813586553 13.172708927261242 6 29.555149489466352 38.317696601125576 18.826833720999407 13.300320188408666 7 26.03819055788052 32.8480651363385 23.640511407002123 17.47323289877886 8 23.58713120214736 37.819934207167684 21.386552086836076 17.206382503848886 9 25.069322119496224 17.264960654671167 21.996770691685438 35.668946534147175 10-11 23.832860743149137 27.20158415981943 29.26357993066221 19.701975166369227 12-13 24.45629038082933 24.695262569194064 29.727906475612127 21.120540574364483 14-15 21.570319728525458 26.15879387401816 27.466288240448876 24.8045981570075 16-17 20.936111252920153 29.270241295233628 28.28768605756472 21.5059613942815 18-19 20.928259485513045 28.241157690576234 30.307720932744402 20.52286189116632 20-21 21.582442990455075 27.51599663728333 30.342235531510703 20.559324840750897 22-23 21.27856332877421 27.338416640765438 30.30538074044118 21.077639290019167 24-25 21.051043844798727 27.488479964765272 30.389550351245752 21.070925839190245 26-27 21.000308980734655 27.71513284968427 30.299273952265494 20.985284217315577 28-29 20.98093983734275 27.801120013413637 30.24160808230804 20.976332066935573 30-31 21.260712680124094 27.643300826784145 30.16583277017916 20.930153722912596 32-33 21.076394590412864 27.841903817147966 30.03511762584874 21.046583966590433 34-35 21.165684706984862 27.85657537206297 30.009373887227024 20.968366033725143 36-37 21.1675782269199 27.782706265491825 30.039476124923898 21.010239382664373 38-39 21.031184286705894 28.001441066160677 30.010057991030433 20.957316656102993 40-41 21.29080434790962 27.904036533439104 29.79634810772685 21.008811010924425 42-43 21.213060705741306 27.985844155571915 29.585394853864642 21.215700284822134 44-45 21.286552308865843 28.144718586432955 29.359341218828632 21.209387885872566 46-47 21.37805142509244 28.16879041603359 29.030889869990688 21.42226828888328 48-49 21.32332035603565 28.316318803414024 28.95207075368125 21.40829008686907 50-51 21.331891899976736 28.451834399168774 28.834662959080244 21.38161074177425 52-53 21.50871759833122 28.320460145036613 28.66775044906725 21.503071807564925 54-55 21.505980538014114 28.22211312197179 28.7259008033467 21.546005536667394 56-57 21.458552935104443 28.35788148384965 28.716872830637037 21.46669275040887 58-59 21.410338927881345 28.37875616297541 28.658272677000635 21.55263223214261 60-61 21.5119301796729 28.29704186495935 28.7422242130849 21.448803742282855 62-63 21.43117074722844 28.41286441497686 28.636797845784322 21.519166992010376 64-65 21.447824257849575 28.335050834303104 28.614725562718142 21.602399345129175 66-67 21.5587882148317 28.358897162511397 28.52899722529511 21.553317397361788 68-69 21.476425891849985 28.442584313568492 28.50913931603397 21.571850478547557 70-71 21.527571631089746 28.164564767451814 28.499388427890615 21.80847517356782 72-73 21.6152824114815 28.239548143473993 28.35551401584744 21.789655429197072 74-75 21.398832098136563 28.416760142147822 28.449263852108537 21.73514390760708 76-77 21.62031616240682 28.22911981903254 28.340058766797295 21.810505251763345 78-79 21.65142986280002 28.238024974942892 28.20781895172106 21.90272621053603 80-81 21.712143388678744 28.290333298165493 28.21161327281032 21.785910040345442 82-83 21.79762532731384 28.15413692302206 28.251334292201076 21.796903457463024 84-85 21.78979522020821 28.11115570724069 28.23865302977263 21.860396042778476 86-87 21.664606523853234 28.195992552451145 28.268722828654326 21.8706780950413 88-89 21.84118584969255 28.18957752477208 28.224249370929865 21.7449872546055 90-91 21.890355028945407 28.13844565886827 28.246903164703035 21.72429614748328 92-93 21.84912790780734 27.96922278464582 28.194797121367166 21.98685218617967 94-95 21.819152170122603 28.120815716113334 28.234201655718415 21.82583045804565 96-97 22.007199083609063 28.119332423662456 28.31889180238064 21.55457669034784 98-99 22.0495998743427 28.92426617964198 27.446346511877056 21.57978743413826 100 20.290411046185948 28.544011206891213 28.482883916111145 22.682693830811694 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2911.0 1 2576.0 2 3600.0 3 5357.5 4 7333.5 5 12167.5 6 16427.0 7 19756.5 8 22313.0 9 22284.0 10 20263.5 11 18007.0 12 19075.0 13 24448.0 14 37217.5 15 55397.5 16 70421.0 17 79069.5 18 81163.5 19 76784.0 20 68826.5 21 60453.5 22 54698.0 23 55550.0 24 62670.0 25 76000.5 26 95899.0 27 118423.0 28 141834.5 29 167943.5 30 193464.0 31 218769.0 32 248914.5 33 280097.5 34 310875.0 35 338720.5 36 368966.0 37 398815.0 38 417861.0 39 432102.0 40 451734.0 41 471578.5 42 483136.5 43 492487.0 44 499687.5 45 505580.0 46 507398.5 47 501702.5 48 491785.5 49 473063.0 50 447300.5 51 417900.5 52 382575.0 53 344846.0 54 306890.5 55 269339.0 56 233647.5 57 199504.5 58 170752.0 59 146617.0 60 120818.5 61 96831.5 62 75781.0 63 57457.5 64 42970.5 65 31329.0 66 23466.5 67 18346.0 68 13907.0 69 10067.5 70 7404.0 71 5421.0 72 3865.0 73 2771.0 74 1988.5 75 1406.0 76 935.5 77 607.5 78 442.5 79 325.5 80 229.0 81 153.0 82 102.5 83 66.5 84 46.5 85 39.0 86 34.5 87 28.5 88 20.5 89 13.5 90 9.5 91 6.5 92 4.5 93 3.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001611700778890264 3 9.2820463705722E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 8.860135171909828E-5 12-13 0.007767385167374281 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 4.219586078015842E-6 24-25 2.194568965131591E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.594295107373595E-4 36-37 0.026025265990530542 38-39 0.12465787780278177 40-41 0.14629002959736262 42-43 0.032601217950368314 44-45 0.002335659117421398 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.007280230757965416 64-65 0.07378390358307609 66-67 0.17934500947961338 68-69 0.18689563381319163 70-71 0.07046334968378148 72-73 0.002439143147916649 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 164.0 20-21 799.0 22-23 1652.0 24-25 3383.0 26-27 4483.0 28-29 7654.0 30-31 14368.0 32-33 15774.0 34-35 20292.0 36-37 22167.0 38-39 24393.0 40-41 33714.0 42-43 43821.0 44-45 52061.0 46-47 54655.0 48-49 43847.0 50-51 36899.0 52-53 42549.0 54-55 42764.0 56-57 40301.0 58-59 32309.0 60-61 57623.0 62-63 46497.0 64-65 69051.0 66-67 93943.0 68-69 88449.0 70-71 90734.0 72-73 90614.0 74-75 89394.0 76-77 81967.0 78-79 91196.0 80-81 100411.0 82-83 94624.0 84-85 107287.0 86-87 118589.0 88-89 126075.0 90-91 133118.0 92-93 139114.0 94-95 155674.0 96-97 428481.0 98-99 69793.0 100-101 9040152.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.51511293620092 #Duplication Level Percentage of deduplicated Percentage of total 1 86.71487477445652 69.81857935713887 2 8.723355661643154 14.04723932559693 3 2.4350153396347802 5.881666052162279 4 0.9421449727914539 3.0342763554631147 5 0.470711956755886 1.8949713179310146 6 0.24720926384887357 1.1942449078600288 7 0.1401641364147073 0.7899731891124662 8 0.08457448720061404 0.5447619510782976 9 0.06527651024096769 0.47301710347193315 >10 0.17371151914804675 2.0587243313195427 >50 0.0022345550342912825 0.11978264814616436 >100 6.291147317475497E-4 0.08489533775422665 >500 7.816818558956241E-5 0.04182088798547379 >1k 1.9539913364946135E-5 0.016047234979690645 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.687644794649491E-5 0.0 2 0.0 4.219111986623727E-5 0.0 1.687644794649491E-5 0.0 3 0.0 5.062934383948473E-5 0.0 1.687644794649491E-5 0.0 4 0.0 1.4344980754520673E-4 0.0 3.375289589298982E-5 8.438223973247454E-6 5 0.0 1.518880315184542E-4 0.0 3.375289589298982E-5 8.438223973247454E-6 6 0.0 1.518880315184542E-4 0.0 4.219111986623727E-5 8.438223973247454E-6 7 0.0 1.518880315184542E-4 0.0 5.062934383948473E-5 8.438223973247454E-6 8 8.438223973247454E-6 1.7720270343819656E-4 0.0 5.062934383948473E-5 8.438223973247454E-6 9 8.438223973247454E-6 2.8689961509041346E-4 0.0 5.9067567812732185E-5 8.438223973247454E-6 10-11 1.265733595987118E-5 2.953378390636609E-4 0.0 5.9067567812732185E-5 8.438223973247454E-6 12-13 1.687644794649491E-5 3.122142870101558E-4 0.0 8.860135171909826E-5 8.438223973247454E-6 14-15 1.687644794649491E-5 4.345685346222439E-4 0.0 9.2820463705722E-5 1.265733595987118E-5 16-17 1.687644794649491E-5 4.5566409455536256E-4 0.0 1.0125868767896946E-4 1.687644794649491E-5 18-19 1.687644794649491E-5 5.189507743547185E-4 0.0 1.1391602363884064E-4 1.687644794649491E-5 20-21 1.687644794649491E-5 5.991139021005692E-4 0.0 1.5188803151845417E-4 1.687644794649491E-5 22-23 1.687644794649491E-5 6.877152538196675E-4 0.0 3.2065251098340326E-4 2.531467191974236E-5 24-25 1.687644794649491E-5 7.594401575922709E-4 0.0 7.299063736859048E-4 3.375289589298982E-5 26-27 1.687644794649491E-5 7.763166055387658E-4 0.0 0.0017256168025291045 3.375289589298982E-5 28-29 2.5314671919742365E-5 7.763166055387658E-4 0.0 0.0049616756962695035 3.375289589298982E-5 30-31 2.5314671919742365E-5 8.775752932177353E-4 0.0 0.005366710446985381 3.375289589298982E-5 32-33 2.9533783906366093E-5 8.81794405204359E-4 0.0 0.0064341457796011844 4.219111986623727E-5 34-35 3.375289589298982E-5 0.0010252442127495656 0.0 0.0076408118077755695 4.219111986623727E-5 36-37 3.375289589298982E-5 0.0011729131322813962 0.0 0.009020461427401528 5.062934383948473E-5 38-39 3.375289589298982E-5 0.0012193233641342573 0.0 0.011754445994733704 5.062934383948473E-5 40-41 6.750579178597963E-5 0.0014007451795590776 0.0 0.01453484079391874 5.062934383948473E-5 42-43 7.59440157592271E-5 0.0014218407394921962 0.0 0.017585258760247698 5.062934383948473E-5 44-45 8.438223973247455E-5 0.0016201390028635113 0.0 0.020956329237560054 5.062934383948473E-5 46-47 9.2820463705722E-5 0.001797341706301708 0.0 0.025053086976571694 5.062934383948473E-5 48-49 9.2820463705722E-5 0.0018015608182883316 0.0 0.03019618448826602 5.062934383948473E-5 50-51 9.2820463705722E-5 0.002008297305632894 0.0 0.03460937562627443 5.062934383948473E-5 52-53 9.2820463705722E-5 0.0020336119775526368 0.0 0.049258132443832016 5.4848455826108454E-5 54-55 9.703957569234573E-5 0.002063145761459003 0.0 0.06705856591539752 5.9067567812732185E-5 56-57 1.0125868767896946E-4 0.002092679545365369 0.0 0.08358904667898928 5.9067567812732185E-5 58-59 1.0547779966559319E-4 0.0021011177693386163 0.0 0.16251597461275935 5.9067567812732185E-5 60-61 1.0969691165221691E-4 0.0021264324412583586 0.0 0.23418181081754996 5.9067567812732185E-5 62-63 1.0969691165221691E-4 0.002164404449137972 0.0 0.23710987453626686 5.9067567812732185E-5 64-65 1.0969691165221691E-4 0.0023880173844290295 0.0 0.23968353284810734 5.9067567812732185E-5 66-67 1.0969691165221691E-4 0.0024048938323755244 0.0 0.24352714386792154 5.9067567812732185E-5 68-69 1.1391602363884064E-4 0.0024555231762150094 0.0 0.24841709466041845 5.9067567812732185E-5 70-71 1.1813513562546437E-4 0.002493495184094623 0.0 0.2522016381124199 5.9067567812732185E-5 72-73 1.1813513562546437E-4 0.0025145907440277415 0.0 0.2555220792458928 5.9067567812732185E-5 74-75 1.1813513562546437E-4 0.002586315647800345 0.0 0.2580113553180008 5.9067567812732185E-5 76-77 1.1813513562546437E-4 0.002721327231372304 0.0 0.26064830030964065 5.9067567812732185E-5 78-79 1.223542476120881E-4 0.0027930521351449073 0.0 0.26234860244025004 5.9067567812732185E-5 80-81 1.2657335959871183E-4 0.002801490359118155 0.0 0.26308694703790914 5.9067567812732185E-5 82-83 1.2657335959871183E-4 0.002801490359118155 0.0 0.2635637066923976 5.9067567812732185E-5 84-85 1.2657335959871183E-4 0.00281836680706465 0.0 0.2638295107475549 5.9067567812732185E-5 86-87 1.2657335959871183E-4 0.002877434374877382 0.0 0.263951864995167 5.9067567812732185E-5 88 1.2657335959871183E-4 0.003004007734476094 0.0 0.2639813987790734 5.9067567812732185E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16170 0.0 52.220737 1 GTATCAA 29510 0.0 37.91288 1 TCAACGC 35835 0.0 30.529968 4 ATCAACG 35945 0.0 30.424252 3 CAACGCA 36720 0.0 29.733994 5 TATCAAC 37620 0.0 29.211193 2 AACGCAG 37600 0.0 29.135422 6 ACGCAGA 43365 0.0 25.25193 7 CGCAGAG 43925 0.0 24.909872 8 GTGGTAT 7835 0.0 24.532541 1 TGGTATC 7455 0.0 23.945618 2 GTACATG 31035 0.0 21.285397 1 GCAGAGT 51265 0.0 21.248516 9 AGACCGA 4185 0.0 21.01558 88-89 TACATGG 30575 0.0 20.940847 2 ACATGGG 30675 0.0 20.238342 3 CGAGACC 4245 0.0 20.17009 86-87 GAGTACT 35770 0.0 20.062037 12-13 GACCGAG 4290 0.0 20.054667 90-91 ACCGAGG 4550 0.0 19.88148 90-91 >>END_MODULE