##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138917_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8550608 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69807573917551 33.0 33.0 33.0 33.0 33.0 2 32.6956078444948 33.0 33.0 33.0 33.0 33.0 3 32.70358821267447 33.0 33.0 33.0 33.0 33.0 4 36.6308690563291 37.0 37.0 37.0 37.0 37.0 5 36.646921131222484 37.0 37.0 37.0 37.0 37.0 6 36.59140402647391 37.0 37.0 37.0 37.0 37.0 7 36.5670430687502 37.0 37.0 37.0 37.0 37.0 8 36.56790101943628 37.0 37.0 37.0 37.0 37.0 9 36.60707893520554 37.0 37.0 37.0 37.0 37.0 10-11 36.586231119471265 37.0 37.0 37.0 37.0 37.0 12-13 36.575001450189276 37.0 37.0 37.0 37.0 37.0 14-15 38.66707367476091 40.0 37.0 40.0 37.0 40.0 16-17 38.60717436701577 40.0 37.0 40.0 37.0 40.0 18-19 38.64031663011566 40.0 37.0 40.0 37.0 40.0 20-21 38.65840778725972 40.0 37.0 40.0 37.0 40.0 22-23 38.65601686476654 40.0 37.0 40.0 37.0 40.0 24-25 38.650301776917324 40.0 37.0 40.0 37.0 40.0 26-27 38.562223847295925 40.0 37.0 40.0 37.0 40.0 28-29 38.445058679631444 40.0 37.0 40.0 37.0 40.0 30-31 38.29582846019382 40.0 37.0 40.0 37.0 40.0 32-33 38.17808169975406 40.0 37.0 40.0 37.0 40.0 34-35 38.15368344690058 40.0 37.0 40.0 37.0 40.0 36-37 38.136471103511425 40.0 37.0 40.0 37.0 40.0 38-39 38.09203970434695 40.0 37.0 40.0 37.0 40.0 40-41 38.060015931253915 40.0 37.0 40.0 37.0 40.0 42-43 37.998418889734225 40.0 37.0 40.0 33.0 40.0 44-45 37.893365813329815 40.0 37.0 40.0 33.0 40.0 46-47 37.78041817522721 40.0 37.0 40.0 33.0 40.0 48-49 37.71058031511474 40.0 37.0 40.0 33.0 40.0 50-51 37.682203805773725 40.0 37.0 40.0 33.0 40.0 52-53 37.619009606582665 40.0 37.0 40.0 33.0 40.0 54-55 37.50188578750759 40.0 37.0 40.0 33.0 40.0 56-57 37.31713492838995 38.5 37.0 40.0 33.0 40.0 58-59 37.12107375026243 37.0 37.0 40.0 33.0 40.0 60-61 36.93924690490128 37.0 37.0 40.0 33.0 40.0 62-63 36.78896940964475 37.0 37.0 40.0 33.0 40.0 64-65 36.60994204282888 37.0 37.0 40.0 33.0 40.0 66-67 36.396941171640904 37.0 37.0 40.0 33.0 40.0 68-69 36.193488612643684 37.0 37.0 40.0 33.0 40.0 70-71 35.97064658087943 37.0 37.0 37.0 33.0 40.0 72-73 35.68506049237338 37.0 33.0 37.0 33.0 40.0 74-75 35.33631021347453 37.0 33.0 37.0 33.0 40.0 76-77 33.22523475403702 35.0 33.0 37.0 27.0 37.0 78-79 34.902358935431465 37.0 33.0 37.0 33.0 37.0 80-81 35.133464051027055 37.0 33.0 37.0 33.0 37.0 82-83 34.94987997095789 37.0 33.0 37.0 33.0 37.0 84-85 34.81075208201635 37.0 33.0 37.0 33.0 37.0 86-87 34.712400495768804 37.0 33.0 37.0 33.0 37.0 88-89 34.60890054573059 37.0 33.0 37.0 33.0 37.0 90-91 34.538979875858125 37.0 33.0 37.0 33.0 37.0 92-93 34.495833752359644 37.0 33.0 37.0 33.0 37.0 94-95 34.46009372979095 37.0 33.0 37.0 33.0 37.0 96-97 34.478662691584276 37.0 33.0 37.0 33.0 37.0 98-99 34.51112081470495 37.0 33.0 37.0 33.0 37.0 100 34.46649081282395 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 1.0 17 2.0 18 9.0 19 4.0 20 51.0 21 191.0 22 818.0 23 2537.0 24 6083.0 25 12622.0 26 23019.0 27 37475.0 28 57532.0 29 82295.0 30 114708.0 31 155082.0 32 208940.0 33 285461.0 34 403532.0 35 609975.0 36 1132427.0 37 2691010.0 38 2655161.0 39 71672.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.265836534665134 20.403168991023797 14.352839002793718 22.978155471517347 2 14.790747686646824 20.710284011387916 42.227026898062995 22.271941403902265 3 17.995112386344154 26.59186016784331 30.73178307846215 24.681244367350384 4 12.178420528692229 17.85851953451731 39.208510084896886 30.754549851893575 5 12.950880218108466 38.111512070252786 35.63511507017981 13.302492641458945 6 29.637026981005327 38.02740109241354 18.811387447535893 13.524184479045232 7 26.225737397855216 33.1248491335353 23.376173951606717 17.273239517002768 8 24.84816284409249 36.240054508404555 21.032668086292812 17.879114561210148 9 25.99340304221641 16.22525556077416 21.45101260635501 36.33032879065442 10-11 24.27860935655649 26.73186908572413 28.832153708925556 20.15736784879382 12-13 25.30564912280702 24.394345029239766 29.047730994152047 21.252274853801172 14-15 22.33423050150352 25.492649177695903 27.37798294577415 24.795137375026428 16-17 21.26035949724277 28.45644426688722 28.09178598761632 22.19141024825369 18-19 21.0791443134804 27.399934601141812 30.44960077692721 21.07132030845058 20-21 22.060218552329115 26.64067749233804 30.45013335703605 20.848970598296795 22-23 21.792867764275 26.578001568992203 30.255694029910973 21.373436636821815 24-25 21.54688854699419 26.647294020174332 30.54049285950019 21.265324573331284 26-27 21.415509285807573 26.968708001106627 30.21364987732988 21.402132835755918 28-29 21.1575406967662 27.29547045524966 30.234927260246415 21.312061587737723 30-31 21.643331612788074 26.940232385602748 30.08063890531808 21.3357970962911 32-33 21.42947203253534 27.16059992265638 29.95761384068661 21.452314204121667 34-35 21.59295813474894 27.231368201632506 29.992926882123054 21.1827467814955 36-37 21.599806198967677 27.131581838734682 29.91385863956058 21.35475332273706 38-39 21.449328468182944 27.25658354092857 29.983813503707797 21.310274487180685 40-41 21.696494438918744 27.099498005045756 29.829334921213263 21.374672634822232 42-43 21.772986162749667 27.310308764485956 29.29014234631867 21.626562726445705 44-45 21.697105876907038 27.708854217114304 28.975518815332517 21.618521090646137 46-47 21.933201316879526 27.58366773737554 28.490941063789816 21.992189881955117 48-49 22.089269213112367 27.720801915130377 28.303926747469703 21.886002124287554 50-51 22.01644966627006 27.714532637291523 28.18858323952179 22.080434456916624 52-53 22.073208663226193 27.804280078602734 27.925019838569465 22.19749141960161 54-55 22.10495481788098 27.69575961670639 27.973639090617425 22.225646474795205 56-57 22.24671512063722 27.694863328794312 27.844258552873374 22.214162997695095 58-59 22.17982972432685 27.70287812937362 28.042108419135893 22.07518372716364 60-61 22.249455636741757 27.848513830312786 27.892522929988495 22.00950760295696 62-63 22.246448539048362 27.67153399627184 27.77229176433378 22.309725700346018 64-65 22.17009185224344 27.696073172845786 27.75228472049988 22.38155025441089 66-67 22.239123474312574 27.779572119227026 27.569477511990815 22.41182689446959 68-69 22.203124488002977 27.71803427862744 27.751286540228676 22.327554693140904 70-71 22.365220628729567 27.31946076176037 27.636014052572726 22.67930455693733 72-73 22.37920533459083 27.51525471637743 27.649967781245095 22.455572167786652 74-75 22.300467213611842 27.63279587858497 27.600463497563776 22.466273410239413 76-77 22.41307256962837 27.449420112074492 27.55682483481558 22.580682483481556 78-79 22.370970575624067 27.4397334706222 27.596461282437467 22.592834671316265 80-81 22.222383852122736 27.476102270192083 27.66467705778201 22.636836819903166 82-83 22.601546273203592 27.324915833359007 27.725254577669382 22.34828331576802 84-85 22.81490213875914 27.35600988019082 27.387319630656375 22.441768350393662 86-87 22.42188249018751 27.454966476893905 27.623720058461426 22.49943097445716 88-89 22.664008568277012 27.195054123038716 27.594591386285156 22.546345922399116 90-91 22.728623950514947 27.2030236858951 27.588023623165835 22.480328740424113 92-93 22.823807153592774 27.153377922940642 27.576655895259655 22.446159028206925 94-95 22.473166034534966 27.17256239654875 27.715869860345983 22.6384017085703 96-97 22.556024517886687 27.304443853140683 27.75622257042274 22.383309058549894 98-99 23.669655629397873 29.235070412251297 27.91347593923852 19.181798019112314 100 22.736178582311506 30.00619517833803 21.620380913526173 25.63724532582429 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2291.0 1 2230.5 2 3981.0 3 6158.5 4 8571.5 5 14921.5 6 20160.0 7 23163.5 8 24324.0 9 22419.5 10 19113.5 11 16346.0 12 18090.5 13 25051.5 14 40076.0 15 60531.0 16 76826.0 17 85021.5 18 85231.5 19 79131.5 20 69251.5 21 58351.0 22 50063.5 23 47655.5 24 51082.0 25 58344.5 26 69261.0 27 82316.0 28 94043.0 29 109088.0 30 124710.5 31 140833.0 32 162293.5 33 183565.5 34 205995.5 35 228056.5 36 251152.5 37 278081.5 38 292879.5 39 298009.0 40 307340.0 41 312701.5 42 315549.5 43 325341.5 44 338764.0 45 354294.5 46 368405.5 47 378443.5 48 380294.0 49 371220.0 50 357736.0 51 344486.5 52 329302.0 53 309098.5 54 286664.5 55 261784.0 56 234355.5 57 200518.5 58 167996.0 59 142275.5 60 114003.0 61 87072.0 62 66820.5 63 51120.5 64 37517.0 65 26236.5 66 18767.5 67 14439.5 68 10879.5 69 7947.5 70 5880.0 71 3730.0 72 2618.5 73 1842.0 74 1209.0 75 870.0 76 545.0 77 338.0 78 208.5 79 125.5 80 87.5 81 67.0 82 55.5 83 35.5 84 21.5 85 15.0 86 13.5 87 11.0 88 8.0 89 7.5 90 5.0 91 2.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0016490055444010531 3 1.637310469618067E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.847537391493096E-5 12-13 0.0071106054680556054 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.1696675266842102E-5 24-25 3.100206573198363E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 6.191519622989525E-4 36-37 0.025201996429203975 38-39 0.11953411173524489 40-41 0.14090958733055692 42-43 0.03105353183195365 44-45 0.002291902142849262 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.007297908956000416 64-65 0.07386869512909244 66-67 0.18130027953620506 68-69 0.18825161122989933 70-71 0.07018507695648274 72-73 0.0022242936669910713 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 131.0 20-21 724.0 22-23 1453.0 24-25 2512.0 26-27 4194.0 28-29 9587.0 30-31 20050.0 32-33 25062.0 34-35 32987.0 36-37 44540.0 38-39 53532.0 40-41 60134.0 42-43 71780.0 44-45 84954.0 46-47 81752.0 48-49 69125.0 50-51 57907.0 52-53 52630.0 54-55 55705.0 56-57 56777.0 58-59 56610.0 60-61 54352.0 62-63 59190.0 64-65 61833.0 66-67 71195.0 68-69 68092.0 70-71 70975.0 72-73 67759.0 74-75 66466.0 76-77 60313.0 78-79 64846.0 80-81 68337.0 82-83 66996.0 84-85 75346.0 86-87 83568.0 88-89 90229.0 90-91 92396.0 92-93 99288.0 94-95 112650.0 96-97 285385.0 98-99 530084.0 100-101 5559162.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.34985883468062 #Duplication Level Percentage of deduplicated Percentage of total 1 85.76561966154355 65.48192954027758 2 8.58218310983272 13.104969378582169 3 2.641687367233553 6.050773727209227 4 1.1926309472347751 3.64228817852986 5 0.6411964527454567 2.4477629326206785 6 0.3476337143010284 1.5925071007835527 7 0.2338922238777643 1.2500346792917774 8 0.14033092123328994 0.8571396821041898 9 0.1090129265723396 0.7490809399458178 >10 0.3379412796317891 3.8903886007656956 >50 0.005300518086698334 0.26866817500132734 >100 0.0020801306731485143 0.3119858551593413 >500 3.154802470896857E-4 0.17371987130346156 >1k 1.7526678682112403E-4 0.17875133842533875 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.3390149565972385E-5 0.0 0.0 0.0 0.0 3 2.3390149565972385E-5 0.0 0.0 0.0 0.0 4 2.3390149565972385E-5 0.0 0.0 0.0 0.0 5 4.678029913194477E-5 0.0 0.0 0.0 0.0 6 9.356059826388954E-5 0.0 0.0 0.0 0.0 7 1.520359721788205E-4 0.0 0.0 0.0 0.0 8 1.520359721788205E-4 0.0 0.0 0.0 0.0 9 1.520359721788205E-4 0.0 0.0 1.1695074782986192E-5 0.0 10-11 1.9296873391927216E-4 0.0 0.0 1.1695074782986192E-5 0.0 12-13 2.572916452256962E-4 0.0 0.0 1.1695074782986192E-5 0.0 14-15 4.3271776697048907E-4 0.0 0.0 1.1695074782986192E-5 0.0 16-17 4.794980661024338E-4 0.0 0.0 2.3390149565972385E-5 0.0 18-19 6.315340382812545E-4 0.0 0.0 4.0932761740451675E-5 0.0 20-21 7.017044869791715E-4 0.0 0.0 8.771306087239644E-5 0.0 22-23 7.484847861111163E-4 0.0 0.0 5.145832904513924E-4 0.0 24-25 9.706912069878539E-4 0.0 0.0 0.00164315800700956 0.0 26-27 9.882338191623333E-4 0.0 0.0 0.003964630351432319 0.0 28-29 0.0012513730017795226 0.0 0.0 0.011291594702973168 0.0 30-31 0.0013566286748263982 0.0 0.0 0.013326537715212767 0.0 32-33 0.0013917138991753567 0.0 0.0 0.017297015604036577 0.0 34-35 0.001532054796571191 0.0 0.0 0.022010130741580015 0.0 36-37 0.0017367186052734496 0.0 0.0 0.02957099658878059 0.0 38-39 0.0018653644278862976 0.0 0.0 0.04933567297202725 0.0 40-41 0.0018712119652777909 0.0 0.0 0.07078444012402393 0.0 42-43 0.0020466380870225835 0.0 0.0 0.08360224208617681 0.0 44-45 0.0022746920452908145 0.0 0.0 0.09854270012144166 0.0 46-47 0.0027717327235677273 0.0 0.0 0.11312061083843394 0.0 48-49 0.0029237686957465482 0.0 0.0 0.1277102166302092 0.0 50-51 0.0029237686957465482 0.0 0.0 0.14222965197328657 0.0 52-53 0.0029296162331380413 0.0 0.0 0.17589392473611234 0.0 54-55 0.0029588539200955067 0.0 0.0 0.21443504368344332 0.0 56-57 0.0031108898922743273 0.0 0.0 0.2514148701472457 0.0 58-59 0.0031108898922743273 0.0 0.0 0.27624351391152535 0.0 60-61 0.0031401275792317927 0.0 0.0 0.29665726694522776 0.0 62-63 0.0031869078783637373 0.0 0.0 0.31165620035440755 0.0 64-65 0.0032453832522786686 0.0 0.0 0.31641024825369146 0.0 66-67 0.0034851322853298853 0.0 0.0 0.3215794713077713 0.0 68-69 0.0035669978088107884 0.0 0.0 0.3270176810818599 0.0 70-71 0.0036196256453342266 0.0 0.0 0.33181266174288426 0.0 72-73 0.003707338706206623 0.0 0.0 0.33582991993084 0.0 74-75 0.0037775091549045402 0.0 0.0 0.3387010607900631 0.0 76-77 0.0037892042296875264 0.0 0.0 0.34164237209798415 0.0 78-79 0.003818441916644992 0.0 0.0 0.3433381579415171 0.0 80-81 0.004309635057530412 0.0 0.0 0.34396969197979843 0.0 82-83 0.004432433342751767 0.0 0.0 0.3444257998963348 0.0 84-85 0.004572774240147601 0.0 0.0 0.3446129210928626 0.0 86-87 0.004713115137543435 0.0 0.0 0.34475910952765 0.0 88 0.004736505287109408 0.0 0.0 0.3447941947519989 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16525 0.0 49.17668 1 GTATCAA 29965 0.0 37.140472 1 ATCAACG 36820 0.0 29.72806 3 CAACGCA 37760 0.0 28.999289 5 TCAACGC 37995 0.0 28.864767 4 TATCAAC 38395 0.0 28.80843 2 AACGCAG 38265 0.0 28.741693 6 ACGCAGA 42570 0.0 25.695036 7 CGCAGAG 42995 0.0 25.431139 8 GTACTAG 2870 0.0 22.260334 1 GCAGAGT 49650 0.0 21.95376 9 TACATGG 30615 0.0 21.5357 2 GTACATG 32285 0.0 21.239655 1 ACATGGG 30640 0.0 21.086966 3 GTGGTAT 7840 0.0 20.969765 1 TGGTATC 7605 0.0 20.665668 2 GAGTACT 33065 0.0 20.269161 12-13 CAGAGTA 47920 0.0 19.764153 10-11 AGAGTAC 46770 0.0 19.161798 10-11 CATGGGG 22040 0.0 19.015194 4 >>END_MODULE