##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138916_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8190889 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.708238507444065 33.0 33.0 33.0 33.0 33.0 2 32.709425924341055 33.0 33.0 33.0 33.0 33.0 3 32.71940103204915 33.0 33.0 33.0 33.0 33.0 4 36.6485199591888 37.0 37.0 37.0 37.0 37.0 5 36.66257215791839 37.0 37.0 37.0 37.0 37.0 6 36.605323915389405 37.0 37.0 37.0 37.0 37.0 7 36.58192242624702 37.0 37.0 37.0 37.0 37.0 8 36.5802859738424 37.0 37.0 37.0 37.0 37.0 9 36.61803950706694 37.0 37.0 37.0 37.0 37.0 10-11 36.59850878213586 37.0 37.0 37.0 37.0 37.0 12-13 36.58771642492042 37.0 37.0 37.0 37.0 37.0 14-15 38.706654857610694 40.0 37.0 40.0 37.0 40.0 16-17 38.6473908387722 40.0 37.0 40.0 37.0 40.0 18-19 38.67763456445326 40.0 37.0 40.0 37.0 40.0 20-21 38.69236803254742 40.0 37.0 40.0 37.0 40.0 22-23 38.68759305902439 40.0 37.0 40.0 37.0 40.0 24-25 38.68788765481921 40.0 37.0 40.0 37.0 40.0 26-27 38.60486814845859 40.0 37.0 40.0 37.0 40.0 28-29 38.4886467662188 40.0 37.0 40.0 37.0 40.0 30-31 38.351002957689715 40.0 37.0 40.0 37.0 40.0 32-33 38.23561341604079 40.0 37.0 40.0 37.0 40.0 34-35 38.21194346441504 40.0 37.0 40.0 37.0 40.0 36-37 38.1999057084066 40.0 37.0 40.0 37.0 40.0 38-39 38.15223798512297 40.0 37.0 40.0 37.0 40.0 40-41 38.125494348648665 40.0 37.0 40.0 37.0 40.0 42-43 38.06666391923664 40.0 37.0 40.0 35.0 40.0 44-45 37.962625050468105 40.0 37.0 40.0 33.0 40.0 46-47 37.858826677877175 40.0 37.0 40.0 33.0 40.0 48-49 37.787334908277884 40.0 37.0 40.0 33.0 40.0 50-51 37.75850601346843 40.0 37.0 40.0 33.0 40.0 52-53 37.69007576923207 40.0 37.0 40.0 33.0 40.0 54-55 37.56823345797595 40.0 37.0 40.0 33.0 40.0 56-57 37.387333773273454 40.0 37.0 40.0 33.0 40.0 58-59 37.1898437209053 37.0 37.0 40.0 33.0 40.0 60-61 37.01193776364158 37.0 37.0 40.0 33.0 40.0 62-63 36.86403145371957 37.0 37.0 40.0 33.0 40.0 64-65 36.6845846676556 37.0 37.0 40.0 33.0 40.0 66-67 36.47113059736802 37.0 37.0 40.0 33.0 40.0 68-69 36.26271498336651 37.0 37.0 40.0 33.0 40.0 70-71 36.0424039908292 37.0 37.0 38.5 33.0 40.0 72-73 35.76008293347269 37.0 35.0 37.0 33.0 40.0 74-75 35.41136604289158 37.0 33.0 37.0 33.0 40.0 76-77 33.305084180836424 35.0 33.0 37.0 27.0 37.0 78-79 34.98039877542045 37.0 33.0 37.0 33.0 37.0 80-81 35.203564561912216 37.0 33.0 37.0 33.0 37.0 82-83 35.00825476874927 37.0 33.0 37.0 33.0 37.0 84-85 34.863227729027294 37.0 33.0 37.0 33.0 37.0 86-87 34.766386203178314 37.0 33.0 37.0 33.0 37.0 88-89 34.66037027672867 37.0 33.0 37.0 33.0 37.0 90-91 34.589754881774354 37.0 33.0 37.0 33.0 37.0 92-93 34.55097297664814 37.0 33.0 37.0 33.0 37.0 94-95 34.50566345347718 37.0 33.0 37.0 33.0 37.0 96-97 34.51758165094811 37.0 33.0 37.0 33.0 37.0 98-99 34.54700509840467 37.0 33.0 37.0 33.0 37.0 100 34.5009785651194 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 5.0 19 9.0 20 46.0 21 198.0 22 781.0 23 2415.0 24 5857.0 25 12011.0 26 21642.0 27 35800.0 28 54003.0 29 77571.0 30 106080.0 31 142684.0 32 192716.0 33 264140.0 34 374045.0 35 565857.0 36 1049828.0 37 2569152.0 38 2642055.0 39 73992.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.72593984925688 20.62683557631358 14.558384878416113 23.088839696013423 2 14.586403872468729 20.69214957762079 42.70532689093933 22.01611965897115 3 17.875968700753084 26.739583643638255 30.610125813283766 24.77432184232489 4 12.189435382341939 17.7030866494573 39.54475998206788 30.56271798613288 5 12.89499833290379 38.124335465906086 35.79903231505151 13.181633886138611 6 29.480524031030086 38.36257578389843 18.68594483455947 13.470955350512014 7 26.073421334363093 33.0286614798467 23.622271037978905 17.275646147811305 8 24.340398215627143 36.86393503806485 21.107269308618392 17.68839743768961 9 25.68647920878918 16.789496231727714 21.731121005302352 35.79290355418075 10-11 24.24733861159927 26.96357151660483 28.9376135141449 19.851476357650995 12-13 25.027621017540092 24.480176051707865 29.196169478583318 21.296033452168725 14-15 22.09022732453095 25.722183513901847 27.31213913410376 24.87545002746344 16-17 21.189146867940707 28.68706925463158 28.069651535993223 22.05413234143449 18-19 21.086923531743622 27.757438783506892 30.203534683475752 20.952103001273734 20-21 22.1193126239518 27.00472878699752 30.137318201996315 20.738640387054367 22-23 21.75727558352898 26.73796177678231 30.10204156387866 21.40272107581005 24-25 21.39186994491035 26.88870806956895 30.36674652107007 21.352675464450623 26-27 21.33650367046394 27.14017148967508 30.147657175302424 21.37566766455856 28-29 21.255049013511602 27.421496032748806 30.099200377428943 21.22425457631065 30-31 21.64827301873777 27.16962258542452 29.933925802027538 21.248178593810174 32-33 21.450609959867432 27.424494663809252 29.81748112174977 21.30741425457355 34-35 21.45145450227033 27.416644281321595 29.92706568674908 21.20483552965899 36-37 21.61853762870679 27.222456333686107 29.87951447339609 21.279491564211014 38-39 21.3989986239488 27.514123234960213 29.83288182752308 21.2539963135679 40-41 21.637924186843726 27.4515865088855 29.659781945310304 21.25070735896047 42-43 21.639409506627956 27.55207600676496 29.332095419616817 21.476419066990267 44-45 21.649337334938675 27.829108463044022 29.006517003021422 21.515037198995877 46-47 21.808206446784503 27.59938725863495 28.65911781608353 21.93328847849702 48-49 21.92736235460353 27.79083101608808 28.50582170715363 21.775984922154763 50-51 21.69660378452523 27.96836547762928 28.3357208477117 21.999309890133784 52-53 21.912194657161738 27.90203178118082 28.104414582235325 22.081358979422117 54-55 22.04344137647101 27.724041941547505 28.14465895513661 22.087857726844877 56-57 22.00322653047926 27.82623204822814 28.08621721224344 22.08432420904916 58-59 21.899758199444133 27.798626865292086 28.30685041530994 21.994764519953844 60-61 21.95663751966874 27.952584710859117 28.075766679894187 22.015011089577957 62-63 22.092143615341143 27.860839265646586 27.993127792019152 22.05388932699312 64-65 21.91441457294867 27.948522747085075 27.941003284468785 22.19605939549747 66-67 22.114044570461687 28.005385488147994 27.62316421202668 22.257405729363644 68-69 21.986105083202595 27.926789820225835 27.91249741751306 22.174607679058514 70-71 22.084924973091617 27.45719511883565 27.99255812377746 22.465321784295277 72-73 22.235365721902113 27.559714639344236 27.910873497162687 22.294046141590968 74-75 21.930766267042905 27.84877875850319 27.874431444291385 22.34602353016252 76-77 22.15858492713685 27.78756338518044 27.649691675062975 22.40416001261973 78-79 22.22838711862597 27.70882374637725 27.662775988745892 22.400013146250895 80-81 22.140312309805235 27.565920370186568 27.73685177949725 22.556915540510946 82-83 22.32650349800071 27.50333702274656 27.846133127386764 22.324026351865967 84-85 22.570343861704398 27.441004003680273 27.632243923509343 22.356408211105986 86-87 22.078915151917492 27.687121191631743 27.84164904013544 22.392314616315325 88-89 22.437683467401776 27.47313190624864 27.738793533292856 22.350391093056732 90-91 22.48869918068296 27.43344156538497 27.862736747429285 22.215122506502784 92-93 22.562774381622695 27.434628540898398 27.634963459390804 22.367633618088107 94-95 22.344433495121756 27.36763476244256 27.77820817293693 22.509723569498753 96-97 22.248846356500575 27.569445929868188 27.995878039247074 22.185829674384166 98-99 23.384217092078984 29.48420989682844 28.125548702949764 19.00602430814281 100 22.640245681454623 30.237016061645328 21.85058649294383 25.272151763956224 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2755.0 1 2416.5 2 3503.0 3 5238.5 4 7077.0 5 11944.5 6 16132.0 7 18971.5 8 20737.0 9 19562.5 10 16384.5 11 13507.0 12 14573.5 13 20088.0 14 32500.0 15 49729.5 16 63696.5 17 71106.0 18 71633.0 19 66593.5 20 58661.5 21 50119.5 22 44553.5 23 44643.5 24 49316.0 25 58692.5 26 74430.5 27 91890.0 28 103160.0 29 115480.0 30 129354.5 31 140937.0 32 159593.0 33 181812.5 34 205146.0 35 226429.5 36 250534.5 37 274476.5 38 282487.0 39 288863.0 40 300677.5 41 305638.0 42 308172.0 43 317807.5 44 327185.0 45 331853.5 46 334440.5 47 337315.5 48 337028.5 49 329941.0 50 320200.0 51 308320.0 52 292496.5 53 273383.5 54 251773.5 55 229633.5 56 207808.5 57 185022.0 58 162682.0 59 143268.0 60 119318.0 61 91579.0 62 68729.0 63 50389.5 64 36316.0 65 26148.0 66 19109.5 67 14232.0 68 10741.0 69 7925.0 70 5920.5 71 4389.5 72 3174.0 73 2250.5 74 1590.0 75 1020.5 76 672.0 77 428.0 78 252.5 79 148.5 80 90.5 81 55.0 82 40.5 83 30.0 84 19.5 85 12.5 86 10.5 87 13.5 88 13.5 89 10.0 90 6.5 91 4.0 92 3.0 93 3.0 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.220868699356077E-5 2 0.001770259614066312 3 2.5638242686477626E-4 4 1.220868699356077E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.4939091471023474E-5 12-13 0.0069345342123425194 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.930876379664261E-4 26-27 0.0 28-29 1.2222438355673811E-5 30-31 1.2237547438852648E-5 32-33 6.131790198836174E-6 34-35 5.902441132833393E-4 36-37 0.02418703787023753 38-39 0.11784986263452739 40-41 0.13953280282662192 42-43 0.0304138731901363 44-45 0.0021796366842583353 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.007003059255885675 64-65 0.07215774796946853 66-67 0.17763345968440603 68-69 0.18494859092257898 70-71 0.06902828022734517 72-73 0.0021971436852201223 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 117.0 20-21 517.0 22-23 1181.0 24-25 2195.0 26-27 3594.0 28-29 7729.0 30-31 16682.0 32-33 20536.0 34-35 26652.0 36-37 35700.0 38-39 40090.0 40-41 47581.0 42-43 57717.0 44-45 66949.0 46-47 68882.0 48-49 56173.0 50-51 45840.0 52-53 41919.0 54-55 42413.0 56-57 45357.0 58-59 51636.0 60-61 51187.0 62-63 53803.0 64-65 56853.0 66-67 65321.0 68-69 61136.0 70-71 62472.0 72-73 62397.0 74-75 60690.0 76-77 55007.0 78-79 59806.0 80-81 64905.0 82-83 61033.0 84-85 67464.0 86-87 76633.0 88-89 84509.0 90-91 86405.0 92-93 93689.0 94-95 104929.0 96-97 275771.0 98-99 513150.0 100-101 5494269.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.48124873684249 #Duplication Level Percentage of deduplicated Percentage of total 1 85.35859275989658 65.28331764696492 2 8.972250687640255 13.724178731414405 3 2.790144765133388 6.401812673818967 4 1.1877142237201412 3.6335146789050365 5 0.5981153282886718 2.287230359808205 6 0.3454350981327708 1.585158459763682 7 0.20020153827077272 1.0718164552189822 8 0.13877711807725077 0.8491077829318701 9 0.09672007547950758 0.6657544935534958 >10 0.3039695696003529 3.4563513105062635 >50 0.0049498693382579026 0.2585575619652127 >100 0.0025919103831889057 0.3613625163786556 >500 2.1482243037496726E-4 0.12448377813061623 >1k 3.2223360854530025E-4 0.29735355063964153 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2208686993560772E-5 0.0 0.0 0.0 3 0.0 1.2208686993560772E-5 0.0 0.0 0.0 4 0.0 3.6626060980682314E-5 0.0 0.0 0.0 5 0.0 3.6626060980682314E-5 0.0 0.0 0.0 6 0.0 3.6626060980682314E-5 0.0 0.0 0.0 7 0.0 3.6626060980682314E-5 0.0 0.0 0.0 8 0.0 4.883474797424309E-5 0.0 0.0 0.0 9 0.0 6.104343496780386E-5 0.0 0.0 0.0 10-11 0.0 6.104343496780386E-5 0.0 0.0 0.0 12-13 0.0 6.104343496780386E-5 0.0 0.0 0.0 14-15 0.0 9.15651524517058E-5 0.0 1.831303049034116E-5 0.0 16-17 0.0 9.766949594848618E-5 0.0 6.104343496780386E-5 0.0 18-19 0.0 1.0377383944526656E-4 0.0 1.1598252643882733E-4 0.0 20-21 0.0 1.0987818294204695E-4 0.0 1.770259614066312E-4 0.0 22-23 0.0 1.342955569291685E-4 0.0 4.2119970127784664E-4 0.0 24-25 0.0 1.5260858741950964E-4 0.0 0.0011048861729172498 0.0 26-27 0.0 1.5871293091629003E-4 0.0 0.00284462406949966 0.0 28-29 0.0 1.5871293091629003E-4 0.0 0.009205349993144821 0.0 30-31 0.0 1.831303049034116E-4 0.0 0.011756965574799024 0.0 32-33 0.0 1.9533899189697236E-4 0.0 0.01659160562424909 0.0 34-35 0.0 2.136520223873135E-4 0.0 0.022482297098642162 0.0 36-37 0.0 2.3196505287765467E-4 0.0 0.03167543840479342 0.0 38-39 0.0 2.3196505287765467E-4 0.0 0.054591143891706995 0.0 40-41 0.0 2.563824268647762E-4 0.0 0.07886811797840258 0.0 42-43 0.0 2.68591113858337E-4 0.0 0.09406182894188897 0.0 44-45 0.0 2.991128313422389E-4 0.0 0.11242369418020437 0.0 46-47 0.0 3.1742586183258005E-4 0.0 0.13070620295306162 0.0 48-49 0.0 3.1742586183258005E-4 0.0 0.14908027687837058 0.0 50-51 0.0 3.7846929680038395E-4 0.0 0.16565967381562613 0.0 52-53 0.0 3.7846929680038395E-4 0.0 0.2197014267926229 0.0 54-55 0.0 3.8457364029716433E-4 0.0 0.28771602203374996 0.0 56-57 0.0 3.906779837939447E-4 0.0 0.34439485140135584 0.0 58-59 0.0 3.906779837939447E-4 0.0 0.365930975257997 0.0 60-61 0.0 3.906779837939447E-4 0.0 0.38341991937627284 0.0 62-63 0.0 4.2119970127784664E-4 0.0 0.39567744111780784 0.0 64-65 0.0 5.249735407231132E-4 0.0 0.4005731246022257 0.0 66-67 0.0 5.55495258207015E-4 0.0 0.40539555596468224 0.0 68-69 0.0 5.799126321941366E-4 0.0 0.410517100158481 0.0 70-71 0.0 5.86016975690917E-4 0.0 0.414436088683414 0.0 72-73 0.0 5.86016975690917E-4 0.0 0.41755540821026876 0.0 74-75 0.0 5.921213191876975E-4 0.0 0.42014975419640044 0.0 76-77 0.0 6.226430366715993E-4 0.0 0.42259759593860935 0.0 78-79 0.0 6.531647541555014E-4 0.0 0.4243129164612046 0.0 80-81 0.0 6.592690976522817E-4 0.0 0.42481347262794067 0.0 82-83 0.0 6.592690976522817E-4 0.0 0.4253201331381734 0.0 84-85 0.0 6.653734411490621E-4 0.0 0.42552157647356714 0.0 86-87 0.0 6.836864716394033E-4 0.0 0.4256558720304964 0.0 88 0.0 7.203125326200856E-4 0.0 0.4256680807174899 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13835 0.0 52.073864 1 GTATCAA 24680 0.0 38.328873 1 ATCAACG 31470 0.0 29.607342 3 TCAACGC 31990 0.0 29.166075 4 TATCAAC 32470 0.0 28.974195 2 CAACGCA 32220 0.0 28.904446 5 AACGCAG 32890 0.0 28.461477 6 ACGCAGA 36760 0.0 25.465128 7 CGCAGAG 37220 0.0 25.173532 8 CGCTACG 225 2.592289E-6 22.86243 94 TACATGG 26990 0.0 22.802197 2 GCAGAGT 41905 0.0 22.276955 9 ACATGGG 27075 0.0 22.221684 3 GTACATG 28550 0.0 22.053713 1 GAGTACT 28975 0.0 20.653566 12-13 CATGGGG 18785 0.0 20.64175 4 GTGGTAT 5975 0.0 19.663836 1 CAGAGTA 41880 0.0 19.654266 10-11 AGAGTAC 39850 0.0 19.283844 10-11 TGGTATC 5695 0.0 19.194798 2 >>END_MODULE