##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138913_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6730217 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69597919353863 33.0 33.0 33.0 33.0 33.0 2 32.69769904893111 33.0 33.0 33.0 33.0 33.0 3 32.706420164461264 33.0 33.0 33.0 33.0 33.0 4 36.63467240357926 37.0 37.0 37.0 37.0 37.0 5 36.64614870516062 37.0 37.0 37.0 37.0 37.0 6 36.58324360120929 37.0 37.0 37.0 37.0 37.0 7 36.5621503734575 37.0 37.0 37.0 37.0 37.0 8 36.55848585565666 37.0 37.0 37.0 37.0 37.0 9 36.59895513027292 37.0 37.0 37.0 37.0 37.0 10-11 36.57703340026035 37.0 37.0 37.0 37.0 37.0 12-13 36.56837862731618 37.0 37.0 37.0 37.0 37.0 14-15 38.671807536072016 40.0 37.0 40.0 37.0 40.0 16-17 38.60863617027505 40.0 37.0 40.0 37.0 40.0 18-19 38.63191699465263 40.0 37.0 40.0 37.0 40.0 20-21 38.647441132845266 40.0 37.0 40.0 37.0 40.0 22-23 38.64517054916216 40.0 37.0 40.0 37.0 40.0 24-25 38.64207129518395 40.0 37.0 40.0 37.0 40.0 26-27 38.557023158933745 40.0 37.0 40.0 37.0 40.0 28-29 38.44397738702866 40.0 37.0 40.0 37.0 40.0 30-31 38.31311841134572 40.0 37.0 40.0 37.0 40.0 32-33 38.199748248077455 40.0 37.0 40.0 37.0 40.0 34-35 38.17037943772915 40.0 37.0 40.0 37.0 40.0 36-37 38.151297241966816 40.0 37.0 40.0 37.0 40.0 38-39 38.108048218381924 40.0 37.0 40.0 37.0 40.0 40-41 38.0806794914526 40.0 37.0 40.0 37.0 40.0 42-43 38.02142625406749 40.0 37.0 40.0 33.0 40.0 44-45 37.92229243108341 40.0 37.0 40.0 33.0 40.0 46-47 37.81465988865611 40.0 37.0 40.0 33.0 40.0 48-49 37.749443840708665 40.0 37.0 40.0 33.0 40.0 50-51 37.723450222685116 40.0 37.0 40.0 33.0 40.0 52-53 37.659822696265394 40.0 37.0 40.0 33.0 40.0 54-55 37.545450096472365 40.0 37.0 40.0 33.0 40.0 56-57 37.37219525635355 40.0 37.0 40.0 33.0 40.0 58-59 37.18378424340693 37.0 37.0 40.0 33.0 40.0 60-61 37.01076818134991 37.0 37.0 40.0 33.0 40.0 62-63 36.86495891003847 37.0 37.0 40.0 33.0 40.0 64-65 36.69331229567817 37.0 37.0 40.0 33.0 40.0 66-67 36.479327041957504 37.0 37.0 40.0 33.0 40.0 68-69 36.27240166007795 37.0 37.0 40.0 33.0 40.0 70-71 36.04880611971929 37.0 37.0 38.5 33.0 40.0 72-73 35.756651062754926 37.0 35.0 37.0 33.0 40.0 74-75 35.39984396806564 37.0 33.0 37.0 33.0 40.0 76-77 33.33289421714956 35.0 33.0 37.0 27.0 37.0 78-79 34.97106186745733 37.0 33.0 37.0 33.0 37.0 80-81 35.17606667837549 37.0 33.0 37.0 33.0 37.0 82-83 34.972089465543675 37.0 33.0 37.0 33.0 37.0 84-85 34.81738349779262 37.0 33.0 37.0 33.0 37.0 86-87 34.7063286974013 37.0 33.0 37.0 33.0 37.0 88-89 34.589278903741146 37.0 33.0 37.0 33.0 37.0 90-91 34.514315423584534 37.0 33.0 37.0 33.0 37.0 92-93 34.468192473877195 37.0 33.0 37.0 33.0 37.0 94-95 34.422831293168215 37.0 33.0 37.0 33.0 37.0 96-97 34.43499015679155 37.0 33.0 37.0 33.0 37.0 98-99 34.461742245897895 37.0 33.0 37.0 33.0 37.0 100 34.41357873871586 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 30.0 21 146.0 22 723.0 23 2149.0 24 5053.0 25 10544.0 26 18798.0 27 30944.0 28 46715.0 29 66904.0 30 92777.0 31 124107.0 32 166285.0 33 226853.0 34 316648.0 35 477922.0 36 864911.0 37 2057504.0 38 2170615.0 39 50584.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.831459520547405 20.223701553753763 14.566781427701365 23.378057497997464 2 14.406578314509726 20.839991839661533 42.7231162389101 22.030313606918636 3 18.300898709623258 26.145696899277215 30.498729236330842 25.05467515476869 4 12.323480803070689 17.926762242584452 39.39063183252486 30.359125121819996 5 13.09864154454455 37.74478594078022 35.78056992813159 13.376002586543642 6 29.467355955981805 38.152484533559615 18.915660520307146 13.464498990151434 7 26.122931846031115 32.92657577014233 23.333868729641257 17.616623654185297 8 23.82119328396098 37.35622491815643 21.210995128388877 17.611586669493718 9 25.31326998817423 17.259621792283962 21.581666683258504 35.8454415362833 10-11 23.99743871366905 27.07895382790319 29.000899228731576 19.92270822969618 12-13 24.836914035073903 24.548863974246824 29.384635319112956 21.229586671566317 14-15 21.87924995583352 25.92186106332084 27.30297552070015 24.89591346014549 16-17 21.11840524607156 29.12166873668412 27.96572532505267 21.794200692191648 18-19 21.112016150445076 28.025626811141453 30.066905717898845 20.79545132051463 20-21 21.934966644846686 27.219830344991237 30.08061060885032 20.764592401311756 22-23 21.590775436043973 27.041966871141664 30.03358119435284 21.333676498461514 24-25 21.36272686569105 27.198846651890634 30.107245768301134 21.33118071411718 26-27 21.30046708140246 27.373082840584615 30.013509255211336 21.312940822801583 28-29 21.223019094668313 27.476570008912287 30.04607272882242 21.254338167596977 30-31 21.55733006711632 27.30779874081795 29.933309524612504 21.201561667453216 32-33 21.29991235282255 27.559600378989018 29.83859852819566 21.30188873999277 34-35 21.41362431086835 27.605281868103404 29.774396824557915 21.206696996470328 36-37 21.46339703339171 27.51226960131916 29.724173451272733 21.300159914016398 38-39 21.278669921086404 27.69514113001445 29.761817318820068 21.26437163007908 40-41 21.575845572178885 27.62591282563505 29.53328693630606 21.26495466588001 42-43 21.509338104530194 27.683832490675293 29.324469349236782 21.482360055557727 44-45 21.54233411294 27.866387552770544 29.131294772222464 21.459983562066988 46-47 21.630276528812733 27.827102439358818 28.795370963849305 21.74725006797914 48-49 21.612128035574873 27.932196440179336 28.73947685783692 21.716198666408868 50-51 21.627814714974683 28.10817765825137 28.549835240300748 21.714172386473198 52-53 21.810835869174213 28.036439317477207 28.37433637760126 21.778388435747313 54-55 21.83682567918779 27.89705762206549 28.423296028619045 21.84282067012768 56-57 21.811759702157488 28.025334809588102 28.361659409191642 21.801246079062764 58-59 21.75805358296191 28.08392655095231 28.383603681473407 21.77441618461237 60-61 21.838814308703977 27.98439348204045 28.393577588588524 21.783214620667046 62-63 21.770828590024173 28.07296269698567 28.321694752314137 21.834513960676023 64-65 21.745615612211793 28.089167783853362 28.270971190263083 21.894245413671758 66-67 21.91763508737432 28.134335089089564 28.03541735724287 21.912612466293247 68-69 21.788194200453923 28.116264393006603 28.169759975053584 21.92578143148589 70-71 21.81918382541026 27.84606522159579 28.206840760065965 22.127910192927985 72-73 21.9565738978601 27.897361815094662 28.071443077303154 22.074621209742084 74-75 21.72411975298385 28.142836839532702 28.0696581155129 22.06338529197054 76-77 21.90557759966376 28.062751425788456 27.942913928424872 22.08875704612291 78-79 21.966784201299703 28.068120429056286 27.837740461603154 22.127354908040857 80-81 21.9269093830807 28.037198872485746 27.865166622641986 22.170725121791563 82-83 21.986638963427488 28.001032794166626 27.968849135998575 22.043479106407318 84-85 22.173897482303513 27.964798050745614 27.843083411849733 22.018221055101144 86-87 21.923057398169203 28.008154144766088 27.96405501840554 22.104733438659174 88-89 22.057853293501005 28.05524403422408 27.875640109831075 22.01126256244384 90-91 22.12536446014005 27.984614883850185 27.89829045348638 21.99173020252339 92-93 22.089392593327993 28.040756332886335 27.881051747132762 21.98879932665291 94-95 21.95373579147805 28.117424694879883 27.86604706410527 22.062792449536797 96-97 22.03316187415619 28.186641929184596 28.012834813178305 21.767361383480914 98-99 23.187551219273534 30.098524477206656 28.120583930296938 18.59334037322287 100 22.135777554184497 31.05631579408641 21.99597831358936 24.811928338139733 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3309.0 1 2633.0 2 2728.0 3 3744.5 4 4796.0 5 7326.5 6 9667.5 7 11739.5 8 13632.0 9 14183.0 10 13186.0 11 11566.5 12 11780.5 13 14659.5 14 22328.0 15 32970.5 16 41592.5 17 46594.0 18 47257.0 19 44281.5 20 39839.5 21 35061.0 22 31908.0 23 32540.5 24 36639.5 25 44552.0 26 56346.5 27 69613.5 28 81819.0 29 95467.5 30 109142.0 31 122680.0 32 139189.5 33 156050.0 34 173724.5 35 190003.0 36 207469.5 37 223729.0 38 232864.0 39 239739.5 40 251347.0 41 262344.0 42 268809.0 43 276577.5 44 281621.5 45 285148.0 46 286169.5 47 284088.5 48 281611.0 49 273984.0 50 263257.5 51 250011.0 52 233050.5 53 215055.5 54 196475.0 55 176631.5 56 156472.5 57 136686.5 58 118993.5 59 103102.0 60 85435.5 61 68278.0 62 53201.0 63 40195.5 64 29840.5 65 22036.0 66 16419.5 67 12366.5 68 9188.0 69 6380.5 70 4330.5 71 3010.5 72 1964.5 73 1198.0 74 784.0 75 516.0 76 361.5 77 254.0 78 184.5 79 148.0 80 108.0 81 72.0 82 55.5 83 39.5 84 23.5 85 15.5 86 8.0 87 4.0 88 2.5 89 1.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015452696398942263 3 1.7830034306471842E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 7.429180961029934E-5 12-13 0.007191447170276976 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.4859919624180746E-5 24-25 2.452344991731882E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.980306402493608E-4 36-37 0.025108251210303204 38-39 0.12066573136915834 40-41 0.1421342910576346 42-43 0.030904062936835702 44-45 0.002198724387446494 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.006518550005972642 64-65 0.07258883385033518 66-67 0.17906514037214386 68-69 0.18485438405746873 70-71 0.0690794026585179 72-73 0.0019261037726092131 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 75.0 20-21 426.0 22-23 979.0 24-25 1962.0 26-27 2977.0 28-29 5158.0 30-31 11179.0 32-33 14387.0 34-35 19755.0 36-37 27418.0 38-39 31544.0 40-41 34422.0 42-43 41142.0 44-45 49886.0 46-47 49064.0 48-49 42129.0 50-51 34828.0 52-53 32486.0 54-55 34360.0 56-57 35322.0 58-59 35625.0 60-61 33602.0 62-63 36857.0 64-65 39172.0 66-67 45345.0 68-69 43799.0 70-71 44731.0 72-73 43225.0 74-75 42796.0 76-77 38315.0 78-79 42531.0 80-81 44657.0 82-83 44571.0 84-85 48724.0 86-87 54951.0 88-89 60517.0 90-91 65123.0 92-93 68456.0 94-95 83162.0 96-97 229675.0 98-99 436747.0 100-101 4678137.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.3507689363897 #Duplication Level Percentage of deduplicated Percentage of total 1 88.66072755396122 74.78600543636382 2 8.038601081905583 13.561243648632601 3 1.925438161253449 4.872365683235902 4 0.6619814325335102 2.2335457142325743 5 0.3110056864260901 1.3116784396815198 6 0.14221381734232452 0.7197506907722607 7 0.0855155223677718 0.504931004740301 8 0.04398400961132072 0.2968068025296366 9 0.03310175112694428 0.2512942344628879 >10 0.09486448784127213 1.196812358072003 >50 0.0017889472000016803 0.10176216964631 >100 6.667865203334369E-4 0.09221421478380604 >500 8.307143853676547E-5 0.04538290772505414 >1k 2.7690471670978985E-5 0.02620669512132717 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.943344768823947E-5 0.0 0.0 0.0 3 0.0 5.943344768823947E-5 0.0 0.0 0.0 4 0.0 1.0400853345441908E-4 0.0 0.0 0.0 5 0.0 1.0400853345441908E-4 0.0 0.0 0.0 6 0.0 1.0400853345441908E-4 0.0 0.0 0.0 7 0.0 1.0400853345441908E-4 0.0 0.0 0.0 8 0.0 1.0400853345441908E-4 0.0 0.0 0.0 9 0.0 2.5259215267501775E-4 0.0 0.0 0.0 10-11 0.0 2.5259215267501775E-4 0.0 2.9716723844119736E-5 0.0 12-13 0.0 2.5259215267501775E-4 0.0 2.9716723844119736E-5 0.0 14-15 0.0 3.34313143246347E-4 0.0 2.9716723844119736E-5 1.4858361922059868E-5 16-17 0.0 3.4174232420737695E-4 0.0 2.9716723844119736E-5 3.714590480514967E-5 18-19 0.0 3.640298670904668E-4 0.0 2.9716723844119736E-5 4.4575085766179605E-5 20-21 0.0 3.714590480514967E-4 0.0 2.9716723844119736E-5 4.4575085766179605E-5 22-23 0.0 4.3832167670076615E-4 0.0 3.714590480514967E-5 7.429180961029934E-5 24-25 0.0 5.200426672720954E-4 0.0 5.943344768823947E-5 1.0400853345441908E-4 26-27 0.0 5.349010291941553E-4 0.0 1.560128001816286E-4 1.0400853345441908E-4 28-29 0.0 5.349010291941553E-4 0.0 6.389095626485743E-4 1.1143771441544901E-4 30-31 0.0 5.794761149603349E-4 0.0 0.0019835913165949922 1.1886689537647894E-4 32-33 0.0 5.794761149603349E-4 0.0 0.004821538443708428 1.1886689537647894E-4 34-35 0.0 7.132013722588737E-4 0.0 0.008825866981703562 1.3372525729853882E-4 36-37 0.0 8.543558105184425E-4 0.0 0.014940082912631197 1.3372525729853882E-4 38-39 0.0 8.766433534015322E-4 0.0 0.030756809178663927 1.4115443825956877E-4 40-41 0.0 9.509351630118315E-4 0.0 0.04742046207425407 1.485836192205987E-4 42-43 0.0 9.509351630118315E-4 0.0 0.05765787343855332 1.485836192205987E-4 44-45 0.0 0.0010549436964662506 0.0 0.06955199215716223 1.560128001816286E-4 46-47 0.0 0.0011589522299206697 0.0 0.08024258356008432 1.7830034306471842E-4 48-49 0.0 0.0011663814108816995 0.0 0.0917280973258366 2.377337907529579E-4 50-51 0.0 0.0013001066681802384 0.0 0.10343648652041977 2.377337907529579E-4 52-53 0.0 0.0013223942110633282 0.0 0.12975807466534883 2.600213336360477E-4 54-55 0.0 0.0013223942110633282 0.0 0.16173326952162165 2.823088765191375E-4 56-57 0.0 0.0013223942110633282 0.0 0.19288382529122017 2.823088765191375E-4 58-59 0.0 0.0013223942110633282 0.0 0.21223684169470314 2.823088765191375E-4 60-61 0.0 0.001366969296829508 0.0 0.22872962342818962 2.971672384411974E-4 62-63 0.0 0.0013818276587515678 0.0 0.2415821064907714 2.971672384411974E-4 64-65 0.0 0.0015452696398942263 0.0 0.24539327632377977 2.971672384411974E-4 66-67 0.0 0.0015452696398942263 0.0 0.2492267336996712 2.971672384411974E-4 68-69 0.0 0.0015601280018162863 0.0 0.2535059419332244 2.971672384411974E-4 70-71 0.0 0.001574986363738346 0.0 0.2574359786616093 3.120256003632572E-4 72-73 0.0 0.001574986363738346 0.0 0.2604150802269823 3.268839622853171E-4 74-75 0.0 0.0016121322685434957 0.0 0.2626512636962523 3.268839622853171E-4 76-77 0.0 0.001693853259114825 0.0 0.2647685802701458 3.268839622853171E-4 78-79 0.0 0.0017235699829589448 0.0 0.2661281203860143 3.268839622853171E-4 80-81 0.0 0.0017235699829589448 0.0 0.26661101714848123 3.34313143246347E-4 82-83 0.0 0.0017235699829589448 0.0 0.2670270512822989 3.4174232420737695E-4 84-85 0.0 0.0017384283448810046 0.0 0.26722763916824677 3.4174232420737695E-4 86-87 0.0 0.0017384283448810046 0.0 0.26735393524458423 3.4174232420737695E-4 88 0.0 0.0018721536021795433 0.0 0.26736136442554526 3.4174232420737695E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9625 0.0 52.862434 1 GTATCAA 18145 0.0 39.45866 1 TCAACGC 22095 0.0 31.773901 4 ATCAACG 22170 0.0 31.686045 3 CAACGCA 22550 0.0 31.152319 5 TATCAAC 22950 0.0 30.780043 2 AACGCAG 23105 0.0 30.408308 6 ACGCAGA 26485 0.0 26.544054 7 CGCAGAG 26585 0.0 26.460583 8 GTGGTAT 4590 0.0 24.93885 1 TGGTATC 4530 0.0 23.827961 2 GCAGAGT 30820 0.0 22.669247 9 GTACATG 20430 0.0 21.794188 1 TACATGG 20080 0.0 21.545475 2 ACATGGG 20105 0.0 20.804127 3 GAGTACT 20650 0.0 20.646442 12-13 CAGAGTA 30410 0.0 19.732634 10-11 AGAGTAC 28455 0.0 19.72684 10-11 GTACTTT 22915 0.0 18.50953 14-15 AGTACTT 22090 0.0 18.31532 12-13 >>END_MODULE