##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138912_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8161776 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69217104218494 33.0 33.0 33.0 33.0 33.0 2 32.69620533570144 33.0 33.0 33.0 33.0 33.0 3 32.70491165158172 33.0 33.0 33.0 33.0 33.0 4 36.63308096179067 37.0 37.0 37.0 37.0 37.0 5 36.64582990270745 37.0 37.0 37.0 37.0 37.0 6 36.58614240332006 37.0 37.0 37.0 37.0 37.0 7 36.56242072803762 37.0 37.0 37.0 37.0 37.0 8 36.55954292301087 37.0 37.0 37.0 37.0 37.0 9 36.600475313216144 37.0 37.0 37.0 37.0 37.0 10-11 36.58039083650421 37.0 37.0 37.0 37.0 37.0 12-13 36.56840998821825 37.0 37.0 37.0 37.0 37.0 14-15 38.67170784887995 40.0 37.0 40.0 37.0 40.0 16-17 38.61130506399587 40.0 37.0 40.0 37.0 40.0 18-19 38.638438251674636 40.0 37.0 40.0 37.0 40.0 20-21 38.65342515111898 40.0 37.0 40.0 37.0 40.0 22-23 38.65149606995273 40.0 37.0 40.0 37.0 40.0 24-25 38.64878859284589 40.0 37.0 40.0 37.0 40.0 26-27 38.564875664113295 40.0 37.0 40.0 37.0 40.0 28-29 38.448903245110216 40.0 37.0 40.0 37.0 40.0 30-31 38.3120803408606 40.0 37.0 40.0 37.0 40.0 32-33 38.19537258413628 40.0 37.0 40.0 37.0 40.0 34-35 38.16899772341141 40.0 37.0 40.0 37.0 40.0 36-37 38.156159978887615 40.0 37.0 40.0 37.0 40.0 38-39 38.107529657661196 40.0 37.0 40.0 37.0 40.0 40-41 38.07945209611498 40.0 37.0 40.0 37.0 40.0 42-43 38.0246163163127 40.0 37.0 40.0 35.0 40.0 44-45 37.92200781161301 40.0 37.0 40.0 33.0 40.0 46-47 37.821822054415634 40.0 37.0 40.0 33.0 40.0 48-49 37.75337416071757 40.0 37.0 40.0 33.0 40.0 50-51 37.72813050924685 40.0 37.0 40.0 33.0 40.0 52-53 37.66289399793337 40.0 37.0 40.0 33.0 40.0 54-55 37.54608867037369 40.0 37.0 40.0 33.0 40.0 56-57 37.372833216351154 40.0 37.0 40.0 33.0 40.0 58-59 37.17660505095215 37.0 37.0 40.0 33.0 40.0 60-61 37.00994265023256 37.0 37.0 40.0 33.0 40.0 62-63 36.86641521249574 37.0 37.0 40.0 33.0 40.0 64-65 36.68833662938679 37.0 37.0 40.0 33.0 40.0 66-67 36.480942499502255 37.0 37.0 40.0 33.0 40.0 68-69 36.27309533128549 37.0 37.0 40.0 33.0 40.0 70-71 36.05855685923218 37.0 37.0 38.5 33.0 40.0 72-73 35.77502380652359 37.0 35.0 37.0 33.0 40.0 74-75 35.42128001804085 37.0 33.0 37.0 33.0 40.0 76-77 33.32294929071794 35.0 33.0 37.0 27.0 37.0 78-79 34.98621244736665 37.0 33.0 37.0 33.0 37.0 80-81 35.205105601585004 37.0 33.0 37.0 33.0 37.0 82-83 34.998059740567314 37.0 33.0 37.0 33.0 37.0 84-85 34.842871294709674 37.0 33.0 37.0 33.0 37.0 86-87 34.73115787513092 37.0 33.0 37.0 33.0 37.0 88-89 34.61555836465433 37.0 33.0 37.0 33.0 37.0 90-91 34.54422363011504 37.0 33.0 37.0 33.0 37.0 92-93 34.499612705797944 37.0 33.0 37.0 33.0 37.0 94-95 34.45070777791617 37.0 33.0 37.0 33.0 37.0 96-97 34.46130487083718 37.0 33.0 37.0 33.0 37.0 98-99 34.485130089028075 37.0 33.0 37.0 33.0 37.0 100 34.428823454450594 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 7.0 20 29.0 21 192.0 22 857.0 23 2462.0 24 6076.0 25 12612.0 26 23022.0 27 37363.0 28 56745.0 29 81035.0 30 109466.0 31 147591.0 32 197706.0 33 269130.0 34 379056.0 35 572259.0 36 1047711.0 37 2540050.0 38 2610821.0 39 67584.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.53396270615611 20.729887710713943 14.70602721760558 23.030122365524367 2 14.316527379080531 20.736931780101845 43.147262729072835 21.799278111744794 3 17.885973263152476 26.74831562271419 30.734534298320092 24.631176815813234 4 11.95123463324649 17.78552854182717 40.129979063380325 30.133257761546016 5 12.622693884272246 38.33954766707638 36.059590461683825 12.978167986967543 6 29.130130501008605 38.9123151627783 18.74692468894025 13.210629647272848 7 25.770530825643828 33.25036119589658 23.719469880084922 17.259638098374666 8 23.97438988769111 37.25558015804403 21.187030861910447 17.58299909235441 9 25.325921711156983 17.080571679497208 21.84180256846059 35.751704040885215 10-11 23.962921541321776 27.343938952487534 29.126645751279074 19.566493754911615 12-13 24.804804168229456 24.615462281540022 29.389120153585953 21.190613396644572 14-15 21.780290221147947 25.95841885393571 27.635327164087816 24.625963760828526 16-17 20.936932108893945 29.00305031649974 28.257642699334067 21.802374875272246 18-19 20.794499873556934 27.97651516042587 30.483855474592787 20.745129491424414 20-21 21.955742649428704 27.425193677752397 30.279917704453418 20.339145968365482 22-23 21.379013041801883 27.095511971032458 30.3303611488716 21.19511383829406 24-25 21.01515453552325 27.229930285790694 30.60157988969684 21.153335288989215 26-27 21.052730306363237 27.511886635683336 30.304904266315564 21.13047879163786 28-29 20.941082182619553 27.84026151756024 30.280769848635806 20.937886451184404 30-31 21.416057283314572 27.50835748112554 30.121465600611984 20.9541196349479 32-33 21.194734384517353 27.763392324394193 29.984587292649607 21.05728599843885 34-35 21.151041497282208 27.867129805306632 29.988959244486736 20.992869452924424 36-37 21.33077503370808 27.58977970284855 29.996319150810375 21.083126112632993 38-39 21.09308422355024 27.8769360064767 29.996663107605464 21.033316662367596 40-41 21.500587821275026 27.828028413062917 29.737732076367106 20.93365168929495 42-43 21.450623412096036 27.911452266578628 29.472850653531573 21.165073667793767 44-45 21.4630345469504 28.226545683331334 29.139852952351642 21.170566817366623 46-47 21.549195435341257 27.986907829527226 28.7196595826051 21.74423715252642 48-49 21.607538846947275 28.101470660434508 28.75982022039869 21.531170272219534 50-51 21.36835565505097 28.32432982149782 28.594269788068587 21.713044735382624 52-53 21.650608996781685 28.294346009919447 28.295167674314143 21.759877318984724 54-55 21.816893750689133 28.059006840249822 28.359812375276196 21.764287033784854 56-57 21.777834261658956 28.250658531229977 28.219868517213964 21.7516386898971 58-59 21.63448411307582 28.254295549051456 28.492437295506484 21.618783042366235 60-61 21.66179859182844 28.31221609847992 28.279430832297326 21.746554477394316 62-63 21.746375226884147 28.20889944666597 28.196467162650546 21.84825816379934 64-65 21.60294106304615 28.35270998164745 28.20058393129437 21.843765024012033 66-67 21.847349103229654 28.51421002077984 27.79691929926655 21.841521576723956 68-69 21.802766699384293 28.273937806796535 28.125955367434358 21.797340126384817 70-71 21.81513155644678 27.81576877314186 28.182957624258986 22.18614204615238 72-73 21.93403238347894 27.930625078788868 28.15550105256347 21.979841485168727 74-75 21.572923022945226 28.25142405239 28.09941455116362 22.07623837350115 76-77 21.7558931033418 28.23424173982557 27.852779566363683 22.15708559046894 78-79 21.945196997775867 28.298295020878893 27.717430847125392 22.03907713421985 80-81 21.829340607594357 28.093202116501637 27.874747072963423 22.20271020294058 82-83 22.016983350451277 28.051006180517046 27.995297623437565 21.936712845594112 84-85 22.411941031064252 27.93226428908011 27.722776621269873 21.933018058585763 86-87 21.712836459219776 28.22959217117956 27.895989743305066 22.161581626295597 88-89 22.082346347273653 28.144965110160925 27.885876606274113 21.886811936291313 90-91 22.126140796015356 28.1715093723809 27.930102020747515 21.77224781085623 92-93 22.161997721792115 28.15123483714575 27.75293455546237 21.933832885599756 94-95 21.879011385378373 28.295546125051136 27.77633790092927 22.04910458864122 96-97 21.88897026743711 28.36710367605108 28.060945732791893 21.682980323719917 98-99 23.00783757203013 30.21890459939186 28.2395111150268 18.533746713551214 100 22.254904192399163 31.257497501057017 21.92538605241211 24.5622122541317 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2834.0 1 2462.5 2 3357.5 3 4916.0 4 6889.5 5 11858.5 6 15925.0 7 18225.0 8 19118.0 9 17847.0 10 15512.5 11 13292.0 12 14258.5 13 19413.5 14 31646.5 15 48554.5 16 62227.0 17 69908.0 18 71141.0 19 66689.5 20 59529.0 21 51686.0 22 46512.0 23 47185.5 24 52888.0 25 64240.0 26 82931.5 27 102611.5 28 115417.0 29 128409.5 30 139894.0 31 150327.5 32 168936.0 33 190689.5 34 215146.0 35 237782.5 36 263386.5 37 285127.5 38 286535.0 39 288114.5 40 303067.0 41 312528.0 42 314323.0 43 319679.5 44 325290.5 45 329779.0 46 331070.5 47 331834.5 48 331717.0 49 326631.5 50 315081.0 51 297842.0 52 279755.5 53 258180.0 54 234072.5 55 211717.0 56 189713.5 57 168375.0 58 148065.0 59 129547.0 60 106336.5 61 79821.0 62 59157.0 63 43384.5 64 31108.5 65 21598.5 66 15053.0 67 11127.0 68 8176.0 69 5891.0 70 4446.0 71 3130.5 72 2161.0 73 1518.5 74 1058.5 75 646.0 76 410.5 77 264.0 78 173.0 79 117.5 80 85.5 81 67.0 82 54.0 83 34.0 84 15.5 85 8.0 86 8.0 87 7.5 88 6.0 89 4.5 90 2.5 91 1.0 92 0.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015315294122259665 3 7.351341178684639E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 2.4504470595615466E-5 12-13 0.00751062023755614 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.8380726607278133E-5 24-25 2.512482441730936E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 6.294505470634929E-4 36-37 0.025137682848154583 38-39 0.1219650053009734 40-41 0.14357228403936953 42-43 0.031795952275873604 44-45 0.0022435585627408935 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.007065282945777043 64-65 0.07436024934582383 66-67 0.18320353833416714 68-69 0.1908512623937136 70-71 0.0718532947496038 72-73 0.0023078329873559337 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 648.0 22-23 1316.0 24-25 2389.0 26-27 4229.0 28-29 7764.0 30-31 16493.0 32-33 20269.0 34-35 26905.0 36-37 35669.0 38-39 39076.0 40-41 46715.0 42-43 54852.0 44-45 64990.0 46-47 65925.0 48-49 53537.0 50-51 43604.0 52-53 39738.0 54-55 40766.0 56-57 43729.0 58-59 48082.0 60-61 47723.0 62-63 49294.0 64-65 51452.0 66-67 58984.0 68-69 55748.0 70-71 56748.0 72-73 57304.0 74-75 55183.0 76-77 49734.0 78-79 53873.0 80-81 60067.0 82-83 56617.0 84-85 61771.0 86-87 70344.0 88-89 77051.0 90-91 82331.0 92-93 85648.0 94-95 101836.0 96-97 271286.0 98-99 522612.0 100-101 5579359.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.63401083624132 #Duplication Level Percentage of deduplicated Percentage of total 1 85.96307718015682 66.73658465320943 2 8.827589006140899 13.706422811212546 3 2.5868085124390747 6.024729602579292 4 1.128647421472779 3.504857045956542 5 0.5579247021892563 2.1656966187783717 6 0.29846667915045716 1.390269924205413 7 0.18832079348447917 1.0234068965444532 8 0.11926157698571699 0.7407003648045105 9 0.07422616333732661 0.5186227291976369 >10 0.24792016563382496 2.884732725481524 >50 0.00489480790836044 0.26416318119410526 >100 0.002197914041549631 0.3432122748358807 >500 3.657924155855441E-4 0.20704673227777767 >1k 2.660307945623783E-4 0.35221173976344594 >5k 3.3253849320296616E-5 0.13734269995906384 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.2252235297807731E-5 0.0 5 0.0 0.0 0.0 1.2252235297807731E-5 0.0 6 0.0 0.0 0.0 1.2252235297807731E-5 0.0 7 0.0 0.0 0.0 4.9008941191230925E-5 0.0 8 0.0 0.0 0.0 4.9008941191230925E-5 0.0 9 0.0 0.0 0.0 4.9008941191230925E-5 0.0 10-11 0.0 0.0 0.0 5.513505884013479E-5 0.0 12-13 0.0 0.0 0.0 6.126117648903866E-5 0.0 14-15 0.0 0.0 0.0 6.126117648903866E-5 0.0 16-17 0.0 0.0 0.0 6.126117648903866E-5 0.0 18-19 0.0 0.0 0.0 6.126117648903866E-5 0.0 20-21 0.0 0.0 0.0 9.801788238246185E-5 0.0 22-23 0.0 0.0 0.0 1.409007059247889E-4 0.0 24-25 0.0 0.0 0.0 2.205402353605392E-4 0.0 26-27 0.0 0.0 0.0 3.920715295298474E-4 0.0 28-29 0.0 0.0 0.0 0.001096575059153792 0.0 30-31 0.0 0.0 0.0 0.003369364706897126 0.0 32-33 0.0 0.0 0.0 0.00815998870833995 0.0 34-35 0.0 0.0 0.0 0.013618359533513294 0.0 36-37 0.0 0.0 0.0 0.022507356242072805 0.0 38-39 0.0 0.0 0.0 0.04491056848411424 0.0 40-41 0.0 0.0 0.0 0.0679876536675351 0.0 42-43 0.0 0.0 0.0 0.08293538073086054 0.0 44-45 0.0 0.0 0.0 0.09964130355942138 0.0 46-47 0.0 0.0 0.0 0.11637785697622674 0.0 48-49 0.0 0.0 0.0 0.13523404709955283 0.0 50-51 0.0 0.0 0.0 0.15120483581024524 0.0 52-53 0.0 0.0 0.0 0.20258458453160194 0.0 54-55 0.0 0.0 0.0 0.26676179302151887 0.0 56-57 0.0 0.0 0.0 0.3218478429204624 0.0 58-59 0.0 0.0 0.0 0.3417944819852934 0.0 60-61 0.0 0.0 0.0 0.35707301940165964 0.0 62-63 0.0 0.0 0.0 0.36912921893470246 0.0 64-65 0.0 0.0 0.0 0.37355840199485996 0.0 66-67 0.0 0.0 0.0 0.3778773149373371 0.0 68-69 0.0 0.0 0.0 0.3822574890563034 0.0 70-71 0.0 0.0 0.0 0.38607406035157055 0.0 72-73 0.0 0.0 0.0 0.38948630788201 0.0 74-75 0.0 0.0 0.0 0.3917652236474022 0.0 76-77 0.0 0.0 0.0 0.3942279229422616 0.0 78-79 0.0 0.0 0.0 0.39575945235448756 0.0 80-81 0.0 0.0 0.0 0.3963598118840801 0.0 82-83 0.0 0.0 0.0 0.3967396311783121 0.0 84-85 0.0 0.0 0.0 0.3969785497666194 0.0 86-87 0.0 0.0 0.0 0.3971010721195975 0.0 88 0.0 0.0 0.0 0.3971194504725442 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14555 0.0 48.60422 1 GTATCAA 25205 0.0 36.22131 1 ATCAACG 31065 0.0 28.845264 3 TCAACGC 31285 0.0 28.586924 4 TATCAAC 32025 0.0 28.210434 2 CAACGCA 31800 0.0 28.137564 5 AACGCAG 31930 0.0 28.042227 6 ACGCAGA 35900 0.0 24.953232 7 CGCAGAG 36375 0.0 24.615484 8 TACATGG 26000 0.0 22.066761 2 GCAGAGT 40810 0.0 21.791952 9 ACATGGG 26100 0.0 21.38528 3 GTACATG 29355 0.0 20.458595 1 GAGTACT 27630 0.0 20.37527 12-13 GTGGTAT 7270 0.0 20.354486 1 CATGGGG 17925 0.0 19.81742 4 TGGTATC 6970 0.0 19.554478 2 CAGAGTA 40855 0.0 19.416376 10-11 AGAGTAC 38645 0.0 18.91417 10-11 GTACTAG 2580 0.0 18.615372 1 >>END_MODULE