##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138911_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6766726 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67571599618486 33.0 33.0 33.0 33.0 33.0 2 32.67491058452788 33.0 33.0 33.0 33.0 33.0 3 32.679758867139 33.0 33.0 33.0 33.0 33.0 4 36.60901431504689 37.0 37.0 37.0 37.0 37.0 5 36.62628706999515 37.0 37.0 37.0 37.0 37.0 6 36.5750745633856 37.0 37.0 37.0 37.0 37.0 7 36.5501130088613 37.0 37.0 37.0 37.0 37.0 8 36.54940483773098 37.0 37.0 37.0 37.0 37.0 9 36.58544486654255 37.0 37.0 37.0 37.0 37.0 10-11 36.56478472750337 37.0 37.0 37.0 37.0 37.0 12-13 36.554220977766796 37.0 37.0 37.0 37.0 37.0 14-15 38.61952678444494 40.0 37.0 40.0 37.0 40.0 16-17 38.55790747253546 40.0 37.0 40.0 37.0 40.0 18-19 38.60409805273628 40.0 37.0 40.0 37.0 40.0 20-21 38.62422735733778 40.0 37.0 40.0 37.0 40.0 22-23 38.61854726028017 40.0 37.0 40.0 37.0 40.0 24-25 38.61592279138043 40.0 37.0 40.0 37.0 40.0 26-27 38.52319133450463 40.0 37.0 40.0 37.0 40.0 28-29 38.400906376647015 40.0 37.0 40.0 37.0 40.0 30-31 38.242007298042466 40.0 37.0 40.0 37.0 40.0 32-33 38.11774404464781 40.0 37.0 40.0 37.0 40.0 34-35 38.08970665187153 40.0 37.0 40.0 37.0 40.0 36-37 38.06974056948481 40.0 37.0 40.0 37.0 40.0 38-39 38.02427835687813 40.0 37.0 40.0 33.0 40.0 40-41 37.994257129228984 40.0 37.0 40.0 33.0 40.0 42-43 37.930747358997834 40.0 37.0 40.0 33.0 40.0 44-45 37.82829244862059 40.0 37.0 40.0 33.0 40.0 46-47 37.715373194246965 40.0 37.0 40.0 33.0 40.0 48-49 37.64971278826404 40.0 37.0 40.0 33.0 40.0 50-51 37.631334963477244 40.0 37.0 40.0 33.0 40.0 52-53 37.572205002237226 40.0 37.0 40.0 33.0 40.0 54-55 37.4541500130179 40.0 37.0 40.0 33.0 40.0 56-57 37.27027185188158 38.5 37.0 40.0 33.0 40.0 58-59 37.08083532304364 37.0 37.0 40.0 33.0 40.0 60-61 36.90548059415541 37.0 37.0 40.0 33.0 40.0 62-63 36.760971452861384 37.0 37.0 40.0 33.0 40.0 64-65 36.59370710399606 37.0 37.0 40.0 33.0 40.0 66-67 36.382783144460504 37.0 37.0 40.0 33.0 40.0 68-69 36.1834190891526 37.0 37.0 40.0 33.0 40.0 70-71 35.96287315215214 37.0 37.0 37.0 33.0 40.0 72-73 35.67244313516685 37.0 33.0 37.0 33.0 40.0 74-75 35.31550884928859 37.0 33.0 37.0 33.0 40.0 76-77 33.185394838659285 35.0 33.0 37.0 27.0 37.0 78-79 34.876893225174314 37.0 33.0 37.0 33.0 37.0 80-81 35.10869444400557 37.0 33.0 37.0 33.0 37.0 82-83 34.921755150749455 37.0 33.0 37.0 33.0 37.0 84-85 34.773661995751375 37.0 33.0 37.0 33.0 37.0 86-87 34.682740450061786 37.0 33.0 37.0 33.0 37.0 88-89 34.57577664924579 37.0 33.0 37.0 33.0 37.0 90-91 34.50753632204098 37.0 33.0 37.0 33.0 37.0 92-93 34.47074312591394 37.0 33.0 37.0 33.0 37.0 94-95 34.427739612641396 37.0 33.0 37.0 33.0 37.0 96-97 34.44394380825916 37.0 33.0 37.0 33.0 37.0 98-99 34.482467023801654 37.0 33.0 37.0 33.0 37.0 100 34.43767406216706 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 1.0 17 2.0 18 3.0 19 10.0 20 39.0 21 188.0 22 758.0 23 2292.0 24 5282.0 25 10890.0 26 20089.0 27 32335.0 28 48717.0 29 69704.0 30 95246.0 31 128763.0 32 171676.0 33 232157.0 34 324985.0 35 487223.0 36 896594.0 37 2128969.0 38 2053695.0 39 57107.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.09976022374191 20.757707753750893 14.541569222925418 22.60096279958178 2 14.696395016407784 21.175153566670435 42.273385250062624 21.855066166859157 3 17.684110438849704 27.283823031950664 30.87567035871035 24.156396170489273 4 11.836597467755821 18.154306551544504 39.84963183814918 30.159464142550497 5 12.608388843938537 38.62440102117346 35.63468295224056 13.132527182647442 6 28.78166321226295 38.90118188636305 18.920689107359912 13.39646579401409 7 25.905397367264076 33.57950855103466 23.588190742198034 16.92690333950323 8 24.624290184690526 36.243190021760896 21.28061950204863 17.851900291499952 9 26.163864178924932 16.240897001001667 21.788114370228676 35.80712444984472 10-11 23.985075192628393 27.077356010197256 29.071756399573474 19.865812397600877 12-13 24.99480322263009 24.95438179040342 29.223099333637542 20.827715653328948 14-15 22.221529289053525 25.992917402005045 27.63238824802423 24.1531650609172 16-17 20.753773686122358 28.897401786329162 28.445883577966658 21.90294094958182 18-19 20.558435497462142 27.681547915491183 31.15992135635461 20.600095230692066 20-21 21.62785164254167 26.962164311065035 31.099476168976704 20.310507877416594 22-23 21.367679214958034 26.93460338631527 30.845764415872885 20.85195298285381 24-25 21.024236504966524 27.08454913291422 31.12615706853033 20.765057293588924 26-27 20.913931960887474 27.310413061072374 30.88870558718147 20.886949390858682 28-29 20.7206307992617 27.47830643467869 31.007085452351845 20.79397731370777 30-31 21.12228753616952 27.329945286541417 30.752392667273327 20.795374510015733 32-33 20.81537048420414 27.56761484572634 30.63099913003171 20.98601554003781 34-35 21.150213278686035 27.632764381759767 30.596619100373918 20.62040323918028 36-37 21.23649689528742 27.464708857266107 30.361654083518967 20.93714016392751 38-39 20.959638218901677 27.81310655735738 30.38584695500709 20.84140826873385 40-41 21.222602165824078 27.60300221526978 30.36409441117533 20.810301207730813 42-43 21.272156827046874 27.695089669924585 29.767817115859934 21.264936387168607 44-45 21.26497333274982 28.178357571386982 29.347591385041603 21.209077710821596 46-47 21.467792730092665 28.110317046132486 28.863776555172905 21.558113668601937 48-49 21.531391320599745 28.226187656551417 28.652184580675925 21.590236442172912 50-51 21.598036410643147 28.1848113927503 28.463879865237708 21.753272331368848 52-53 21.71978513323268 28.213398488655372 28.256738207838083 21.810078170273865 54-55 21.876600598070798 28.115544961242506 28.223004413282727 21.78485002740397 56-57 21.846319857084442 28.27736163565954 28.062014521937083 21.814303985318933 58-59 21.6836718454587 28.0956417173915 28.343621530160533 21.87706490698927 60-61 21.9315155949235 28.258716194826178 28.205785960733788 21.603982249516534 62-63 21.68616848131896 28.1515958358661 28.299290367626924 21.86294531518802 64-65 21.761791493549627 28.04561088762183 28.18201828324034 22.010579335588204 66-67 21.758907958757575 28.234234837943344 28.057713179364075 21.94914402393501 68-69 21.79145397046739 28.271371299086134 28.055296861641644 21.881877868804832 70-71 21.954673580061538 27.8488259071317 27.90989348366727 22.28660702913949 72-73 21.918352390457756 27.99507561749256 27.8844344531727 22.202137538876983 74-75 21.7804629532196 28.158333525824137 27.930355971107556 22.130847549848703 76-77 21.89657206698116 27.829785394926493 28.022033162113164 22.251609375979186 78-79 21.872952914691517 27.769265792923477 27.849099664434075 22.508681627950935 80-81 21.90614868982812 28.03781154264661 27.850347017351705 22.205692750173558 82-83 22.434757021015248 27.638803090856552 27.92446249363908 22.001977394489128 84-85 22.21545659608594 27.716583086407077 27.659853748492097 22.40810656901489 86-87 21.99331824561915 27.938380007797793 27.844973324228267 22.223328422354786 88-89 22.432769962881853 27.674915619021018 27.777394507272913 22.114919910824213 90-91 22.335727559991888 27.72803065909557 27.8202470568426 22.115994724069935 92-93 22.36248768118711 27.523045515817714 27.80092798363904 22.31353881935614 94-95 22.2411552050316 27.573994209711607 27.98568400773536 22.19916657752143 96-97 22.535847974596674 27.53242057017713 28.007235387506356 21.92449606771984 98-99 23.265854018784157 29.478450784990052 28.32031894836529 18.9353762478605 100 22.31116263612123 30.214730429018648 22.186364421727244 25.287742513132876 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1961.0 1 2046.0 2 3885.0 3 5925.5 4 8242.5 5 14421.0 6 19424.5 7 22337.5 8 23771.5 9 22054.0 10 18465.5 11 15179.5 12 16260.5 13 22521.5 14 36808.0 15 56393.5 16 71618.5 17 79036.0 18 78898.0 19 72424.5 20 62193.0 21 51006.5 22 42361.5 23 39137.0 24 41155.0 25 47200.0 26 56949.0 27 67512.0 28 76528.0 29 89386.5 30 104253.0 31 118384.5 32 138578.5 33 162018.0 34 183710.5 35 202808.5 36 223511.0 37 242344.0 38 249975.0 39 251012.0 40 252018.0 41 249688.0 42 244312.5 43 248668.0 44 256886.5 45 263491.5 46 266589.5 47 265906.5 48 265792.5 49 259313.5 50 247178.5 51 235916.5 52 224505.0 53 210555.0 54 197888.5 55 181733.0 56 161668.5 57 139431.5 58 119347.0 59 102664.5 60 83036.5 61 64931.0 62 50712.0 63 37574.5 64 26621.0 65 19415.5 66 14122.0 67 10765.0 68 8506.0 69 6594.5 70 4837.5 71 2936.5 72 2090.5 73 1570.0 74 1085.0 75 779.0 76 505.5 77 306.5 78 182.0 79 118.5 80 92.0 81 74.0 82 60.0 83 40.5 84 28.0 85 19.5 86 13.0 87 9.0 88 6.5 89 4.5 90 2.5 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.4778195540945503E-5 2 0.001788161660454406 3 1.9211654203229154E-4 4 1.4778195540945503E-5 5 1.4778195540945503E-5 6 1.4778195540945503E-5 7 1.4778195540945503E-5 8 1.4778195540945503E-5 9 0.0 10-11 8.128007547520026E-5 12-13 0.007588603410275516 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.478043006026129E-5 24-25 2.734964091399839E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 6.698873859758629E-4 36-37 0.025007963356689773 38-39 0.12170300333537519 40-41 0.14419160275796042 42-43 0.030989140875954176 44-45 0.00210821907090405 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.007026048651877924 64-65 0.07323827113495116 66-67 0.18087487368884161 68-69 0.18800547753498995 70-71 0.07025206171798527 72-73 0.0024970031729715575 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 132.0 20-21 599.0 22-23 1352.0 24-25 2091.0 26-27 3552.0 28-29 7216.0 30-31 13928.0 32-33 15716.0 34-35 19403.0 36-37 20507.0 38-39 23582.0 40-41 32814.0 42-43 43648.0 44-45 51457.0 46-47 52071.0 48-49 41632.0 50-51 34756.0 52-53 38703.0 54-55 39655.0 56-57 36845.0 58-59 28518.0 60-61 49514.0 62-63 40097.0 64-65 52385.0 66-67 65607.0 68-69 62945.0 70-71 65218.0 72-73 63313.0 74-75 60800.0 76-77 56469.0 78-79 63062.0 80-81 69526.0 82-83 64305.0 84-85 72360.0 86-87 75653.0 88-89 80903.0 90-91 86433.0 92-93 87102.0 94-95 99267.0 96-97 238851.0 98-99 417657.0 100-101 4387082.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.08015349527584 #Duplication Level Percentage of deduplicated Percentage of total 1 85.54033981156888 65.93462522713784 2 8.888429205119087 13.702429749249436 3 2.778095132649648 6.424079977473409 4 1.171573412051546 3.6122023372766883 5 0.598701098904387 2.3073986300670235 6 0.3344578763307227 1.5468038667165653 7 0.18263583303830053 0.9854318631030842 8 0.13334397127886427 0.8222539019075609 9 0.08670836284399021 0.6015144525604954 >10 0.2792875708937421 3.219524085451495 >50 0.004400211882356493 0.22887489368103942 >100 0.0014136345333095313 0.18029360419301096 >500 3.6832734426866864E-4 0.18977624527410328 >1k 2.4555156087454884E-4 0.24479116590824468 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.9556391081891006E-5 0.0 0.0 0.0 0.0 3 2.9556391081891006E-5 0.0 0.0 0.0 0.0 4 2.9556391081891006E-5 2.9556391081891006E-5 0.0 1.4778195540945503E-5 0.0 5 5.911278216378201E-5 2.9556391081891006E-5 0.0 1.4778195540945503E-5 0.0 6 7.389097770472752E-5 2.9556391081891006E-5 0.0 1.4778195540945503E-5 0.0 7 1.0344736878661853E-4 2.9556391081891006E-5 0.0 1.4778195540945503E-5 0.0 8 1.1822556432756402E-4 2.9556391081891006E-5 0.0 1.4778195540945503E-5 0.0 9 1.1822556432756402E-4 2.9556391081891006E-5 0.0 2.9556391081891006E-5 0.0 10-11 1.4778195540945504E-4 2.9556391081891006E-5 0.0 2.9556391081891006E-5 0.0 12-13 1.4778195540945504E-4 2.9556391081891006E-5 0.0 2.9556391081891006E-5 0.0 14-15 2.5122932419607353E-4 2.9556391081891006E-5 0.0 2.9556391081891006E-5 0.0 16-17 2.881748130484373E-4 2.9556391081891006E-5 0.0 2.9556391081891006E-5 0.0 18-19 4.5073496399883784E-4 4.433458662283651E-5 0.0 6.650187993425477E-5 0.0 20-21 5.320150394740381E-4 4.433458662283651E-5 0.0 1.4039285763898227E-4 0.0 22-23 5.837387238673475E-4 4.433458662283651E-5 0.0 5.467932350149836E-4 0.0 24-25 8.423571458338936E-4 7.389097770472752E-5 0.0 0.0016847142916677875 0.0 26-27 8.423571458338936E-4 7.389097770472752E-5 0.0 0.003694548885236376 0.0 28-29 0.0010861973722594944 7.389097770472752E-5 0.0 0.013706776364226955 0.0 30-31 0.0011970338388165858 7.389097770472752E-5 0.0 0.01877569743477126 0.0 32-33 0.0011970338388165858 7.389097770472752E-5 0.0 0.02019440420670203 0.0 34-35 0.0013004812076032042 8.866917324567302E-5 0.0 0.021709169249648944 0.0 36-37 0.001455652260783132 8.866917324567302E-5 0.0 0.02430274256708488 0.0 38-39 0.001699492487208733 8.866917324567302E-5 0.0 0.029319939953235875 0.0 40-41 0.0017290488782906238 8.866917324567302E-5 0.0 0.03463270125020579 0.0 42-43 0.0019137763225524425 1.0344736878661851E-4 0.0 0.03912527269465322 0.0 44-45 0.002083725571273316 1.1822556432756402E-4 0.0 0.04401685541870618 0.0 46-47 0.0022832312110760804 1.1822556432756402E-4 0.0 0.04941828588892176 0.0 48-49 0.002467958655337899 1.3300375986850953E-4 0.0 0.056556154335198436 0.0 50-51 0.002467958655337899 1.6256015095040052E-4 0.0 0.06327284420855817 0.0 52-53 0.002467958655337899 1.7733834649134603E-4 0.0 0.08437610744102836 0.0 54-55 0.002527071437501681 1.7733834649134603E-4 0.0 0.11344481807006815 0.0 56-57 0.002645297001829245 2.142838353437098E-4 0.0 0.13910715462692003 0.0 58-59 0.0026822424906816087 2.2167293311418254E-4 0.0 0.27064787313687594 0.0 60-61 0.0027191879795339727 2.2167293311418254E-4 0.0 0.39196946943026806 0.0 62-63 0.0027930789572387003 2.2906203088465528E-4 0.0 0.3966246010256659 0.0 64-65 0.0028374135438615365 2.3645112865512804E-4 0.0 0.40035609539975464 0.0 66-67 0.0030147518903528825 2.3645112865512804E-4 0.0 0.40566885669672453 0.0 68-69 0.003044308281434774 2.3645112865512804E-4 0.0 0.41191264431277397 0.0 70-71 0.003155144747991865 2.66007519737019E-4 0.0 0.4170997909476459 0.0 72-73 0.003229035725696592 3.029530085893828E-4 0.0 0.4212450747968811 0.0 74-75 0.003265981214548956 3.2512030190080105E-4 0.0 0.4244962778158891 0.0 76-77 0.0032807594100899016 3.398984974417466E-4 0.0 0.42764403346611046 0.0 78-79 0.00330292670340132 3.6206579075316484E-4 0.0 0.4299642101660389 0.0 80-81 0.0037462725696296847 3.9901127960552857E-4 0.0 0.4307105090408567 0.0 82-83 0.0038275526451048854 3.9901127960552857E-4 0.0 0.43128685866695354 0.0 84-85 0.003901443622809613 4.0640037737600134E-4 0.0 0.43148636430675635 0.0 86-87 0.00397533460051434 4.285676706874196E-4 0.0 0.4316563135554772 0.0 88 0.003990112796055286 4.4334586622836507E-4 0.0 0.43167109175101814 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15000 0.0 49.661255 1 GTATCAA 27755 0.0 38.51634 1 ATCAACG 34670 0.0 30.226 3 CGAGACC 3150 0.0 30.102049 86-87 CAACGCA 35030 0.0 29.890608 5 AACGCAG 35175 0.0 29.82178 6 TCAACGC 35255 0.0 29.748611 4 TATCAAC 36215 0.0 29.233873 2 ACCGAGG 3425 0.0 28.26433 90-91 GAGACCG 3345 0.0 28.066872 88-89 GACCGAG 3430 0.0 27.716127 90-91 ACGCAGA 39555 0.0 26.508688 7 AGACCGA 3580 0.0 26.30372 88-89 CGCAGAG 39935 0.0 26.256445 8 GCCCACG 3525 0.0 25.37099 82-83 CACGAGA 3695 0.0 25.102797 84-85 CCCACGA 3815 0.0 24.079803 82-83 ATCTCCG 3565 0.0 23.987371 74-75 GCAGAGT 45150 0.0 23.157072 9 TACATGG 28635 0.0 23.132145 2 >>END_MODULE