##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138910_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8180027 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7167557026401 33.0 33.0 33.0 33.0 33.0 2 32.71402331557096 33.0 33.0 33.0 33.0 33.0 3 32.72303722224878 33.0 33.0 33.0 33.0 33.0 4 36.65637717332718 37.0 37.0 37.0 37.0 37.0 5 36.6698864196903 37.0 37.0 37.0 37.0 37.0 6 36.61751813288636 37.0 37.0 37.0 37.0 37.0 7 36.59435622889753 37.0 37.0 37.0 37.0 37.0 8 36.59327163590047 37.0 37.0 37.0 37.0 37.0 9 36.628744257201106 37.0 37.0 37.0 37.0 37.0 10-11 36.60976094577683 37.0 37.0 37.0 37.0 37.0 12-13 36.599430784274915 37.0 37.0 37.0 37.0 37.0 14-15 38.73550013954721 40.0 37.0 40.0 37.0 40.0 16-17 38.67736872995651 40.0 37.0 40.0 37.0 40.0 18-19 38.708439898792506 40.0 37.0 40.0 37.0 40.0 20-21 38.72589317966408 40.0 37.0 40.0 37.0 40.0 22-23 38.71996154943005 40.0 37.0 40.0 37.0 40.0 24-25 38.71691130136368 40.0 37.0 40.0 37.0 40.0 26-27 38.632578941072346 40.0 37.0 40.0 37.0 40.0 28-29 38.51916468835782 40.0 37.0 40.0 37.0 40.0 30-31 38.37805905661325 40.0 37.0 40.0 37.0 40.0 32-33 38.266834689305725 40.0 37.0 40.0 37.0 40.0 34-35 38.24103915324277 40.0 37.0 40.0 37.0 40.0 36-37 38.223636761203835 40.0 37.0 40.0 37.0 40.0 38-39 38.17606467438672 40.0 37.0 40.0 37.0 40.0 40-41 38.14551491838186 40.0 37.0 40.0 37.0 40.0 42-43 38.08438422950837 40.0 37.0 40.0 37.0 40.0 44-45 37.98303988050522 40.0 37.0 40.0 33.0 40.0 46-47 37.8738891669504 40.0 37.0 40.0 33.0 40.0 48-49 37.804710905557556 40.0 37.0 40.0 33.0 40.0 50-51 37.772537186709954 40.0 37.0 40.0 33.0 40.0 52-53 37.70877473091268 40.0 37.0 40.0 33.0 40.0 54-55 37.59289961960187 40.0 37.0 40.0 33.0 40.0 56-57 37.41305171554184 40.0 37.0 40.0 33.0 40.0 58-59 37.2298592649632 37.0 37.0 40.0 33.0 40.0 60-61 37.051606545282425 37.0 37.0 40.0 33.0 40.0 62-63 36.90450634675426 37.0 37.0 40.0 33.0 40.0 64-65 36.72960285875389 37.0 37.0 40.0 33.0 40.0 66-67 36.51730246598936 37.0 37.0 40.0 33.0 40.0 68-69 36.31122305456519 37.0 37.0 40.0 33.0 40.0 70-71 36.088807114250486 37.0 37.0 38.5 33.0 40.0 72-73 35.80581497542401 37.0 35.0 37.0 33.0 40.0 74-75 35.44432450364425 37.0 33.0 37.0 33.0 40.0 76-77 33.31150705466073 35.0 33.0 37.0 27.0 37.0 78-79 34.97541006004164 37.0 33.0 37.0 33.0 37.0 80-81 35.19256513284719 37.0 33.0 37.0 33.0 37.0 82-83 35.00469198127042 37.0 33.0 37.0 33.0 37.0 84-85 34.86644481607442 37.0 33.0 37.0 33.0 37.0 86-87 34.775585672247445 37.0 33.0 37.0 33.0 37.0 88-89 34.67592892325297 37.0 33.0 37.0 33.0 37.0 90-91 34.61650754835926 37.0 33.0 37.0 33.0 37.0 92-93 34.58541112761514 37.0 33.0 37.0 33.0 37.0 94-95 34.53640960464378 37.0 33.0 37.0 33.0 37.0 96-97 34.55005127860592 37.0 33.0 37.0 33.0 37.0 98-99 34.584132656030434 37.0 33.0 37.0 33.0 37.0 100 34.531492879749 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 3.0 19 9.0 20 41.0 21 201.0 22 797.0 23 2469.0 24 5868.0 25 11883.0 26 21548.0 27 35809.0 28 53351.0 29 76766.0 30 105427.0 31 142500.0 32 191403.0 33 259507.0 34 366261.0 35 556378.0 36 1038413.0 37 2575205.0 38 2666752.0 39 69432.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.35764560621759 20.250121484958786 14.309785116793652 23.082447792029974 2 14.755470783672243 20.64961739569902 42.334435756304416 22.26047606432432 3 18.257867127203493 26.480574189375357 30.30567532911598 24.95588335430517 4 12.10253024899068 17.745923759401713 39.32962307572409 30.82192291588351 5 13.07387202361851 38.12290304736232 35.35464744912149 13.448577479897677 6 29.71712189143676 37.9002875908081 18.79838998047072 13.584200537284422 7 26.52425230381269 32.97894982498224 23.068994760041743 17.427803111163325 8 24.82351219623114 36.167460082955714 21.013341398506384 17.99568632230676 9 26.140647213022643 16.33279450055605 21.431848574582947 36.094709711838355 10-11 24.398889000271392 26.715558152669555 28.652179334524853 20.2333735125342 12-13 25.306491941121028 24.383973433931704 28.955059544604218 21.354475080343054 14-15 22.399412618075708 25.53608319385743 27.23052136624977 24.83398282181709 16-17 21.28391507754192 28.38593931291425 28.010934438235964 22.31921117130787 18-19 21.026422039927255 27.491113415640317 30.36558436787556 21.116880176556872 20-21 22.12980857158785 26.665896881182938 30.216401003060234 20.98789354416898 22-23 21.83268923096335 26.641134467875382 30.02474583086944 21.50143047029183 24-25 21.52426670677718 26.812929403359192 30.28889657266071 21.373907317202914 26-27 21.440519487700357 27.06044122398106 30.065731101773054 21.433308186545535 28-29 21.215265856236464 27.34337160262848 30.106013230539304 21.335349310595753 30-31 21.663787849056888 27.02188166938166 29.85850875981322 21.455821721748233 32-33 21.416426158561244 27.240422434485527 29.80081660677378 21.54233480017945 34-35 21.65900464671586 27.35147786351063 29.77813514167841 21.2113823480951 36-37 21.661299606175266 27.22354334744536 29.6432282196879 21.471928826691475 38-39 21.52167769609562 27.347855997412555 29.703366465265457 21.42709984122636 40-41 21.76191836872654 27.15489517113851 29.661004476727516 21.422181983407434 42-43 21.778956549154106 27.259767093412407 29.148824482676165 21.812451874757315 44-45 21.73770543565779 27.741658641322363 28.751033295969435 21.76960262705041 46-47 21.93368965766306 27.618565304653984 28.384636476062415 22.06310856162054 48-49 22.026621836496176 27.75122727993558 28.18754203310791 22.034608850460334 50-51 21.98732092883952 27.792143480746073 27.971016192568225 22.24951939784618 52-53 21.977536328910002 27.782241332522716 27.798492212290988 22.441730126276294 54-55 22.19042702889072 27.623481472646468 27.903498600989767 22.282592897473048 56-57 22.13356475794705 27.489476448624174 27.87697463354304 22.499984159885734 58-59 21.97796939850236 27.274024465253355 28.179720716710293 22.56828541953399 60-61 22.201318550542243 27.502014159674154 28.223919265108172 22.07274802467543 62-63 21.837924963210273 27.53694305291588 28.17809046145706 22.44704152241679 64-65 21.74368600814888 27.829682715502024 27.898258361704354 22.52837291464474 66-67 21.787831534934845 28.169048850843904 27.535207045300513 22.507912568920737 68-69 21.831998404483784 28.076831184990713 27.48512882227896 22.606041588246544 70-71 21.960262357566044 27.51103764309959 27.410602793689076 23.118097205645295 72-73 22.10290029142214 27.360483345901716 27.463068204634116 23.073548158042023 74-75 22.205083295324464 27.37913178793733 27.540250277241178 22.87553463949703 76-77 22.439663210028186 27.25987416127135 27.119582603536664 23.1808800251638 78-79 22.404763010380826 27.204701740468018 26.9047522369456 23.485783012205555 80-81 22.369012426583062 27.394589685295017 27.054940228802344 23.18145765931957 82-83 22.66940477049111 27.20153442062537 27.09206342532874 23.036997383554777 84-85 22.71570351314553 27.497699485148843 26.817395750565254 22.969201251140372 86-87 22.77411476109452 27.53282996752715 26.95202725553964 22.741028015838687 88-89 22.89662746478762 27.386460840244624 27.0734386132673 22.643473081700453 90-91 22.789007848485156 27.089653566042315 27.12416643626412 22.99717214920841 92-93 22.859650754618 26.8421516195793 27.235845909014557 23.062351716788147 94-95 22.19359250884457 27.070308823490265 27.77027908450273 22.96581958316244 96-97 22.319929289982856 27.060347939725922 27.808787184104844 22.81093558618638 98-99 23.496457659956736 28.898297005217195 28.152467105849215 19.452778228976854 100 22.597874303543165 29.779227869063828 21.807253484227363 25.815644343165644 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1734.0 1 1805.0 2 3458.0 3 5356.0 4 7722.5 5 13793.5 6 18669.0 7 21223.5 8 22221.5 9 20607.5 10 17777.5 11 15269.0 12 16483.0 13 22477.0 14 36480.0 15 55517.0 16 70223.5 17 77949.0 18 78234.5 19 71954.5 20 62320.5 21 52151.0 22 44460.5 23 42018.0 24 44799.5 25 51542.5 26 62038.5 27 73268.5 28 83598.5 29 98306.0 30 113417.5 31 127737.5 32 147822.0 33 167156.5 34 186510.5 35 210211.5 36 234127.0 37 257755.0 38 270551.0 39 274023.0 40 280597.5 41 285581.0 42 290989.0 43 303222.0 44 317882.0 45 333662.5 46 343489.0 47 350505.5 48 357050.5 49 352817.5 50 339943.5 51 327384.0 52 314950.0 53 296347.5 54 275130.0 55 249316.5 56 219566.5 57 188943.5 58 163011.5 59 139186.5 60 110157.5 61 84646.0 62 64751.0 63 47420.5 64 33122.0 65 23115.0 66 16877.5 67 13154.5 68 10337.5 69 7946.0 70 6057.0 71 3781.0 72 2570.5 73 1850.5 74 1258.5 75 822.0 76 501.5 77 329.5 78 209.0 79 145.0 80 124.5 81 105.5 82 74.5 83 49.0 84 32.5 85 20.5 86 16.5 87 16.0 88 12.5 89 7.5 90 4.5 91 2.5 92 1.5 93 2.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.4449797048347153E-5 2 0.0020293331550128137 3 9.779918819338861E-5 4 2.4449797048347153E-5 5 2.4449797048347153E-5 6 2.4449797048347153E-5 7 0.0 8 0.0 9 0.0 10-11 8.557428966921504E-5 12-13 0.006974304608041025 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 6.113251156565986E-6 24-25 2.506900702763754E-4 26-27 0.0 28-29 2.448059221490239E-5 30-31 2.4512738841402947E-5 32-33 2.4565137194141782E-5 34-35 5.479878164452621E-4 36-37 0.02525994453561115 38-39 0.1222041016126764 40-41 0.1441539797900467 42-43 0.032181255659211025 44-45 0.002292301535785195 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.006696127417360008 64-65 0.07374743064365687 66-67 0.17927172150670917 68-69 0.18731222917179052 70-71 0.07053458509021206 72-73 0.0024300742668081693 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 144.0 20-21 620.0 22-23 1338.0 24-25 2399.0 26-27 4034.0 28-29 8421.0 30-31 16768.0 32-33 19853.0 34-35 25464.0 36-37 28894.0 38-39 31261.0 40-41 47165.0 42-43 58783.0 44-45 73177.0 46-47 70480.0 48-49 61975.0 50-51 36024.0 52-53 17439.0 54-55 17009.0 56-57 16013.0 58-59 32870.0 60-61 54271.0 62-63 55123.0 64-65 54888.0 66-67 69468.0 68-69 66595.0 70-71 71340.0 72-73 66287.0 74-75 64153.0 76-77 60143.0 78-79 65289.0 80-81 68151.0 82-83 66451.0 84-85 76033.0 86-87 81377.0 88-89 89081.0 90-91 94664.0 92-93 96047.0 94-95 106703.0 96-97 284514.0 98-99 551463.0 100-101 5467855.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.46077599854047 #Duplication Level Percentage of deduplicated Percentage of total 1 84.44693938000697 63.724315763170324 2 9.314793945117218 14.05803158730103 3 3.0260069740801 6.850345033232391 4 1.3274769482060054 4.0068976252719795 5 0.6824207922572323 2.574800127063477 6 0.3792288095336908 1.7170140149049007 7 0.2428944278460899 1.2830301407691211 8 0.15875572871668678 0.958386438653997 9 0.10754698203795678 0.7304020848796782 >10 0.3087910028776882 3.4407192573034338 >50 0.0036218304700563093 0.1774617146740564 >100 0.0011307813904776391 0.1774293223913488 >500 1.7836248415546973E-4 0.09459246229739743 >1k 2.1403497566782864E-4 0.20657442808690787 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 7.334939114504145E-5 0.0 0.0 0.0 0.0 3 7.334939114504145E-5 0.0 0.0 0.0 0.0 4 7.334939114504145E-5 0.0 0.0 0.0 0.0 5 1.3447388376590933E-4 0.0 0.0 0.0 0.0 6 2.3227307195929794E-4 0.0 0.0 0.0 0.0 7 5.623453321119845E-4 0.0 0.0 0.0 0.0 8 5.990200276845052E-4 0.0 0.0 0.0 0.0 9 5.990200276845052E-4 0.0 0.0 0.0 0.0 10-11 6.234698247328523E-4 0.0 0.0 0.0 0.0 12-13 6.90706766615807E-4 0.0 0.0 0.0 0.0 14-15 8.740802444784107E-4 0.0 0.0 2.4449797048347153E-5 0.0 16-17 9.107549400509314E-4 0.0 0.0 3.6674695572520726E-5 0.0 18-19 0.0012163774031552707 0.0 0.0 9.168673893130181E-5 0.0 20-21 0.0014303131273283084 0.0 0.0 1.6503613007634328E-4 0.0 22-23 0.0014853251706870895 0.0 0.0 4.4620879613233553E-4 0.0 24-25 0.0019070841697710777 0.0 0.0 0.0016625861992876061 0.0 26-27 0.0019070841697710777 0.0 0.0 0.003960867121832239 0.0 28-29 0.0024083050092621942 0.0 0.0 0.011014633570280392 0.0 30-31 0.002567228690076451 0.0 0.0 0.012200448727125227 0.0 32-33 0.0026039033856489714 0.0 0.0 0.014437605157048993 0.0 34-35 0.0029523129935879184 0.0 0.0 0.016931484455980403 0.0 36-37 0.0033312848478372994 0.0 0.0 0.02218819082137504 0.0 38-39 0.0037041442528245932 0.0 0.0 0.08343493242748465 0.0 40-41 0.0038080558902800687 0.0 0.0 0.14866699095247485 0.0 42-43 0.004174802846005276 0.0 0.0 0.16278063629863326 0.0 44-45 0.004486537758371702 0.0 0.0 0.18243216067624227 0.0 46-47 0.005427854944733067 0.0 0.0 0.2063379497402637 0.0 48-49 0.005733477407837407 0.0 0.0 0.2292840842701375 0.0 50-51 0.005733477407837407 1.2224898524173576E-5 0.0 0.2531654235371106 0.0 52-53 0.005751814755623667 1.2224898524173576E-5 0.0 0.554496947259465 0.0 54-55 0.0058557263930791425 1.2224898524173576E-5 0.0 0.9648256662233511 0.0 56-57 0.006124674160610961 1.2224898524173576E-5 0.0 1.4230454251556872 0.0 58-59 0.006136899059135135 1.2224898524173576E-5 0.0 1.941118287262377 0.0 60-61 0.006173573754707656 1.2224898524173576E-5 0.0 2.089938089446404 0.0 62-63 0.006277485392163131 1.2224898524173576E-5 0.0 2.0951458962177023 0.0 64-65 0.006344722334046086 1.2224898524173576E-5 0.0 2.0994796227445214 0.0 66-67 0.00673591908681964 1.2224898524173576E-5 0.0 2.1037033251846236 0.0 68-69 0.006845943173537202 1.2224898524173576E-5 0.0 2.108305999478975 0.0 70-71 0.007047653999186066 1.2224898524173576E-5 0.0 2.112193517209662 0.0 72-73 0.007243252375572843 1.2224898524173576E-5 0.0 2.1154636775648785 0.0 74-75 0.007377726259338753 1.2224898524173576E-5 0.0 2.1182509544283903 0.0 76-77 0.0074449632012217075 1.2224898524173576E-5 0.0 2.121117693132309 0.0 78-79 0.007457188099745881 1.2224898524173576E-5 0.0 2.1231409138380597 0.0 80-81 0.008154007315623775 1.2224898524173576E-5 0.0 2.1238560704017235 0.0 82-83 0.008343493242748466 1.2224898524173576E-5 0.0 2.1244184157338353 0.0 84-85 0.008551316517659415 1.2224898524173576E-5 0.0 2.1246506888057946 0.0 86-87 0.008759139792570366 1.2224898524173576E-5 0.0 2.12475460044325 0.0 88 0.008801926937404975 1.2224898524173576E-5 0.0 2.1247729377910365 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18015 0.0 43.117474 1 ATCTCGT 4675 0.0 39.86477 94 TATCTCG 5950 0.0 35.672646 94 GTATCAA 31640 0.0 35.29999 1 ATCAACG 37795 0.0 29.058268 3 CAACGCA 38385 0.0 28.56653 5 TATCAAC 39160 0.0 28.421785 2 AACGCAG 38730 0.0 28.4154 6 TCAACGC 38690 0.0 28.397257 4 CGCTATC 9235 0.0 26.066605 94 ACGCAGA 42805 0.0 25.609177 7 CGCAGAG 42820 0.0 25.539566 8 TACATGG 32320 0.0 23.136383 2 GTACATG 33875 0.0 22.610857 1 GCAGAGT 48530 0.0 22.47218 9 ACATGGG 32450 0.0 22.376371 3 TATGCCG 2300 0.0 21.837328 86-87 GTACTAG 2610 0.0 21.719702 1 CTCGTAT 2365 0.0 21.190578 82-83 TGCCGTC 2500 0.0 20.725893 88-89 >>END_MODULE