Basic Statistics
Measure | Value |
---|---|
Filename | SRR2138909_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7362070 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-100 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 21670 | 0.0 | 38.054832 | 1 |
GTATCAA | 35485 | 0.0 | 31.69959 | 1 |
CGCTACG | 315 | 1.8189894E-12 | 28.243824 | 94 |
ATCAACG | 42520 | 0.0 | 25.839266 | 3 |
AACGCAG | 43535 | 0.0 | 25.393404 | 6 |
CAACGCA | 43590 | 0.0 | 25.195465 | 5 |
TCAACGC | 43935 | 0.0 | 25.063774 | 4 |
TATCAAC | 44790 | 0.0 | 24.984299 | 2 |
GTACTAG | 2420 | 0.0 | 23.335281 | 1 |
ACGCAGA | 47840 | 0.0 | 22.917337 | 7 |
CGCAGAG | 48095 | 0.0 | 22.79583 | 8 |
GTACATG | 31930 | 0.0 | 21.71736 | 1 |
TACATGG | 31790 | 0.0 | 21.49952 | 2 |
GCAGAGT | 52610 | 0.0 | 20.76055 | 9 |
ACATGGG | 32075 | 0.0 | 20.71271 | 3 |
GAGTACT | 33790 | 0.0 | 19.589243 | 12-13 |
CATGGGG | 21785 | 0.0 | 19.002956 | 4 |
TAACGCC | 965 | 0.0 | 18.932543 | 4 |
CAGAGTA | 50240 | 0.0 | 18.747564 | 10-11 |
AGAGTAC | 48445 | 0.0 | 18.71355 | 10-11 |