##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138909_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7362070 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6875668120515 33.0 33.0 33.0 33.0 33.0 2 32.68188063954839 33.0 33.0 33.0 33.0 33.0 3 32.68414617084597 33.0 33.0 33.0 33.0 33.0 4 36.612141558012894 37.0 37.0 37.0 37.0 37.0 5 36.62642232415612 37.0 37.0 37.0 37.0 37.0 6 36.581069590482024 37.0 37.0 37.0 37.0 37.0 7 36.553029922290875 37.0 37.0 37.0 37.0 37.0 8 36.55708992172038 37.0 37.0 37.0 37.0 37.0 9 36.59185663814661 37.0 37.0 37.0 37.0 37.0 10-11 36.57603235231396 37.0 37.0 37.0 37.0 37.0 12-13 36.562526979504405 37.0 37.0 37.0 37.0 37.0 14-15 38.6172666790726 40.0 37.0 40.0 37.0 40.0 16-17 38.559171061943175 40.0 37.0 40.0 37.0 40.0 18-19 38.60137074219615 40.0 37.0 40.0 37.0 40.0 20-21 38.6249761590733 40.0 37.0 40.0 37.0 40.0 22-23 38.624324615949234 40.0 37.0 40.0 37.0 40.0 24-25 38.62015456843304 40.0 37.0 40.0 37.0 40.0 26-27 38.52331978407841 40.0 37.0 40.0 37.0 40.0 28-29 38.404743233882016 40.0 37.0 40.0 37.0 40.0 30-31 38.24892015410951 40.0 37.0 40.0 37.0 40.0 32-33 38.1274240456942 40.0 37.0 40.0 37.0 40.0 34-35 38.10701621117497 40.0 37.0 40.0 37.0 40.0 36-37 38.094695760974666 40.0 37.0 40.0 37.0 40.0 38-39 38.053479367225485 40.0 37.0 40.0 37.0 40.0 40-41 38.02900756764226 40.0 37.0 40.0 35.0 40.0 42-43 37.97030305792477 40.0 37.0 40.0 33.0 40.0 44-45 37.860169299417315 40.0 37.0 40.0 33.0 40.0 46-47 37.74430339792851 40.0 37.0 40.0 33.0 40.0 48-49 37.68057497981415 40.0 37.0 40.0 33.0 40.0 50-51 37.65653128540319 40.0 37.0 40.0 33.0 40.0 52-53 37.58994479139791 40.0 37.0 40.0 33.0 40.0 54-55 37.46633358740977 40.0 37.0 40.0 33.0 40.0 56-57 37.27218578824575 38.5 37.0 40.0 33.0 40.0 58-59 37.068935090351516 37.0 37.0 40.0 33.0 40.0 60-61 36.877685009240025 37.0 37.0 40.0 33.0 40.0 62-63 36.72084437126091 37.0 37.0 40.0 33.0 40.0 64-65 36.5313908936768 37.0 37.0 40.0 33.0 40.0 66-67 36.30950220355919 37.0 37.0 40.0 33.0 40.0 68-69 36.11200879086107 37.0 37.0 38.5 33.0 40.0 70-71 35.89740372132243 37.0 37.0 37.0 33.0 40.0 72-73 35.62756381001396 37.0 33.0 37.0 33.0 40.0 74-75 35.28111109204941 37.0 33.0 37.0 33.0 40.0 76-77 33.143396142297554 33.0 33.0 37.0 27.0 37.0 78-79 34.86201943530595 37.0 33.0 37.0 33.0 37.0 80-81 35.111060207741644 37.0 33.0 37.0 33.0 37.0 82-83 34.93477881110452 37.0 33.0 37.0 33.0 37.0 84-85 34.80750978290508 37.0 33.0 37.0 33.0 37.0 86-87 34.727313925267886 37.0 33.0 37.0 33.0 37.0 88-89 34.6357728177273 37.0 33.0 37.0 33.0 37.0 90-91 34.57645120777779 37.0 33.0 37.0 33.0 37.0 92-93 34.540274461184 37.0 33.0 37.0 33.0 37.0 94-95 34.50401054568421 37.0 33.0 37.0 33.0 37.0 96-97 34.52238311696557 37.0 33.0 37.0 33.0 37.0 98-99 34.554183238566296 37.0 33.0 37.0 33.0 37.0 100 34.51639413644043 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 5.0 18 4.0 19 12.0 20 54.0 21 194.0 22 778.0 23 2262.0 24 5335.0 25 10890.0 26 19193.0 27 31905.0 28 48193.0 29 69016.0 30 96624.0 31 132342.0 32 178294.0 33 246887.0 34 348503.0 35 530929.0 36 989344.0 37 2371668.0 38 2215645.0 39 63990.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.13420739933399 20.63357741330289 14.483471220314728 22.74874396704839 2 14.845419163234261 20.569806250824342 42.45419788069478 22.130576705246618 3 18.043504659428297 27.148372290263246 30.569424707371383 24.238698342937074 4 12.514931262538934 17.501545081750105 38.85922030081213 31.124303354898824 5 12.913052986456256 38.00539793835158 35.40653647683328 13.675012598358885 6 29.43517244470645 37.89254924226474 18.46204939643334 14.210228916595469 7 25.869707840322082 33.12304827310797 23.74386551608447 17.263378370485473 8 24.718754372071984 36.2017883557206 20.971167076650996 18.10829019555641 9 26.03433545184982 16.360045476340215 21.96507232340904 35.64054674840092 10-11 24.50761257356718 26.72343154877705 28.416482688583166 20.3524731890726 12-13 25.480285655272368 24.38900443324931 29.026762845036096 21.10394706644223 14-15 22.552685589786567 25.32835194449387 27.361516529997676 24.757445935721883 16-17 20.99779002372974 28.404497648079957 28.26497167236932 22.332740655820984 18-19 20.974685108943543 27.38820060118961 30.788969678364918 20.84814461150193 20-21 21.952563153871417 26.339169069027356 30.820175958417114 20.888091818684114 22-23 21.860555699112656 26.146787993699427 30.731976813852995 21.26067949333492 24-25 21.333737108188856 26.45915248183268 30.92573856112606 21.281371848852405 26-27 21.26115140213089 26.652997288215545 30.846770753783638 21.23908055586993 28-29 21.033401193817582 27.02677957595553 30.82707099353041 21.11274823669648 30-31 21.33681527341015 26.886019259080644 30.575628977507357 21.20153649000185 32-33 21.26964303728642 27.15990910505411 30.314018442304107 21.256429415355363 34-35 21.275169804808286 27.100657784089847 30.472660024337134 21.151512386764733 36-37 21.52945062870777 27.004030003448598 30.263527981465344 21.202991386378283 38-39 21.528126059589187 27.13125633923253 30.24179010339603 21.09882749778225 40-41 21.397374167083374 27.02047210786912 30.19028877069763 21.391864954349877 42-43 21.456781217003996 27.293412908440644 29.61320842301432 21.636597451541036 44-45 21.462686646493008 27.584439512318554 29.32034320452019 21.632530636668246 46-47 21.76352258024774 27.486693183821377 28.78592308830996 21.96386114762092 48-49 22.01543300766208 27.616242602260765 28.28265955247656 22.085664837600604 50-51 21.873688385328254 27.785878881540743 28.021650821056802 22.318781912074197 52-53 21.86649871667813 27.82810392898556 27.891829936192746 22.413567418143565 54-55 21.99180004331102 27.756179597778118 27.82683695859518 22.42518340031568 56-57 22.06581476718504 27.525830150227776 27.89981649844734 22.508538584139846 58-59 21.85802782287767 27.552512679950375 28.14867857015374 22.44078092701822 60-61 22.121938518577416 27.837454805681972 27.770951532358275 22.269655143382337 62-63 22.373340876069033 27.591231758525065 27.672705260051334 22.362722105354564 64-65 22.05684171105008 27.71096201661608 27.586617991948515 22.645578280385323 66-67 22.164625447255602 27.64403134319668 27.50420515968026 22.687138049867453 68-69 22.07146917997347 27.563124792091802 27.657048464061667 22.708357563873058 70-71 22.225936224338874 27.201951330138634 27.760473157296207 22.811639288226285 72-73 22.410673397901736 27.283846805148404 27.66974706284442 22.635732734105442 74-75 22.192929458289 27.537325035418558 27.663502213812276 22.606243292480162 76-77 22.43796010809284 27.36318496679694 27.502177490089526 22.6966774350207 78-79 22.33276911792131 27.163955483309586 27.63760978749965 22.865665611269456 80-81 22.228732309289214 27.35265298825147 27.647507570109763 22.77110713234956 82-83 22.599314313643443 27.067730949082296 27.710519115501995 22.622435621772265 84-85 22.72829124040197 27.109497928413727 27.416956482700428 22.745254348483876 86-87 22.323508348978617 27.380670844044218 27.620501708415684 22.675319098561474 88-89 22.702551280245025 26.934100012992403 27.495642245883868 22.867706460878708 90-91 22.799844052321596 26.77143913740651 27.705481404873865 22.723235405398025 92-93 22.820973137389707 26.964457126525165 27.45693563909101 22.757634096994117 94-95 22.52035335015221 26.839673346799707 27.585565576310454 23.054407726737626 96-97 22.66692102663324 26.96379368590677 27.69018327375619 22.679102013703805 98-99 23.704685901807025 29.036971530855777 27.69426568360041 19.56407688373679 100 23.08740286120445 29.071722183323896 21.550669628150626 26.290205327321033 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3250.0 1 2970.5 2 4855.0 3 7274.0 4 9891.5 5 17383.0 6 23563.0 7 26956.0 8 28262.5 9 25791.0 10 21349.0 11 17067.5 12 17815.5 13 24890.0 14 41386.0 15 63849.5 16 81469.0 17 90295.5 18 90261.5 19 82695.5 20 70692.0 21 57928.5 22 48794.0 23 46458.0 24 49657.0 25 56271.0 26 65956.0 27 76313.5 28 85116.5 29 97327.0 30 111452.5 31 124466.0 32 142125.5 33 160059.5 34 177436.0 35 196400.0 36 215258.5 37 237505.0 38 249542.0 39 250146.0 40 252431.0 41 253770.5 42 259636.5 43 276579.5 44 295558.0 45 312924.0 46 328056.5 47 342176.5 48 349536.0 49 342258.5 50 331135.5 51 319757.5 52 301493.0 53 278021.0 54 252061.5 55 226050.0 56 202100.5 57 175907.5 58 147543.5 59 123057.5 60 99254.0 61 75148.5 62 57177.0 63 43767.5 64 32117.0 65 22826.0 66 16858.5 67 12736.5 68 9453.0 69 7001.0 70 5409.0 71 3936.5 72 2737.5 73 1912.0 74 1375.0 75 907.5 76 583.0 77 403.5 78 274.5 79 184.5 80 116.5 81 75.0 82 64.5 83 51.0 84 33.0 85 21.0 86 12.5 87 7.5 88 3.5 89 2.0 90 1.0 91 1.0 92 1.5 93 1.0 94 1.5 95 1.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.7166272529329386E-5 2 0.0017522245781417456 3 1.0866509011731754E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 8.829038572032051E-5 12-13 0.007328102014786602 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.9407980700417066E-4 26-27 0.0 28-29 2.720857995360257E-5 30-31 2.0446182036720527E-5 32-33 6.839348357831424E-6 34-35 5.702265221424112E-4 36-37 0.025078840438451936 38-39 0.12380908873892305 40-41 0.14666174679444846 42-43 0.032476183009003144 44-45 0.0021834247750192647 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.00766065952458293 64-65 0.07911378582733944 66-67 0.1927001881090307 68-69 0.20063624368171973 70-71 0.07447104619914395 72-73 0.0025666771216535183 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 198.0 20-21 912.0 22-23 1565.0 24-25 2586.0 26-27 4536.0 28-29 10210.0 30-31 24407.0 32-33 30566.0 34-35 39803.0 36-37 52318.0 38-39 61927.0 40-41 67937.0 42-43 79965.0 44-45 94532.0 46-47 90860.0 48-49 76479.0 50-51 62733.0 52-53 56182.0 54-55 59633.0 56-57 59283.0 58-59 57829.0 60-61 55103.0 62-63 60540.0 64-65 63542.0 66-67 71446.0 68-69 68760.0 70-71 71745.0 72-73 67709.0 74-75 65552.0 76-77 60769.0 78-79 64825.0 80-81 65785.0 82-83 64359.0 84-85 73369.0 86-87 80777.0 88-89 86528.0 90-91 90864.0 92-93 89580.0 94-95 100619.0 96-97 233097.0 98-99 415155.0 100-101 4477485.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.60874350964342 #Duplication Level Percentage of deduplicated Percentage of total 1 86.04397279889707 65.05676669902545 2 8.415975474762904 12.726426621095957 3 2.5392159227475672 5.7596077625587005 4 1.16784213986125 3.531963072500895 5 0.6007540736255342 2.271113033256323 6 0.35902954697689937 1.6287463757855916 7 0.2229562163793938 1.18002075646771 8 0.1529435107683775 0.9251093341720513 9 0.11046626738726206 0.7516994109616066 >10 0.37054111811176144 4.456260531248582 >50 0.01106002305541747 0.5619081766532696 >100 0.004694658641217074 0.6642797282650493 >500 2.284369942671866E-4 0.12318272075778906 >1k 3.1981179107583215E-4 0.36291577725089375 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.0749408793994084E-5 2 0.0 0.0 0.0 0.0 4.0749408793994084E-5 3 0.0 0.0 0.0 0.0 4.0749408793994084E-5 4 0.0 0.0 0.0 0.0 5.433254505865877E-5 5 0.0 0.0 0.0 1.3583136264664693E-5 5.433254505865877E-5 6 0.0 0.0 0.0 1.3583136264664693E-5 6.791568132332347E-5 7 0.0 0.0 0.0 1.3583136264664693E-5 6.791568132332347E-5 8 0.0 0.0 0.0 2.7166272529329386E-5 8.149881758798817E-5 9 0.0 0.0 0.0 2.7166272529329386E-5 8.149881758798817E-5 10-11 0.0 0.0 0.0 6.791568132332347E-5 8.149881758798817E-5 12-13 0.0 0.0 0.0 1.1545665824964988E-4 8.829038572032051E-5 14-15 0.0 0.0 0.0 2.512880208962968E-4 1.5620606704364398E-4 16-17 0.0 0.0 0.0 5.569085868512524E-4 2.1053861210230273E-4 18-19 0.0 0.0 0.0 0.0011070256055701725 2.444964527639645E-4 20-21 0.0 0.0 0.0 0.00243138139137498 2.580795890286292E-4 22-23 0.0 0.0 0.0 0.005351755688277889 3.056205659549556E-4 24-25 0.0 0.0 0.0 0.009413113431412632 3.4636997474894965E-4 26-27 0.0 0.0 0.0 0.01401100505700163 3.6674467914594674E-4 28-29 0.0 0.0 0.0 0.03826369485756044 3.6674467914594674E-4 30-31 0.0 0.0 0.0 0.050264395747391694 3.7353624727827907E-4 32-33 0.0 0.0 0.0 0.05590818886535988 4.074940879399408E-4 34-35 0.0 0.0 0.0 0.06278804738341255 4.482434967339349E-4 36-37 0.0 0.0 0.0 0.07306368996763138 4.482434967339349E-4 38-39 0.0 0.0 0.0 0.09990396722660883 4.550350648662672E-4 40-41 0.0 0.0 0.0 0.12941333076159287 4.754097692632643E-4 42-43 0.0 0.0 0.0 0.14572667741545514 4.889929055279291E-4 44-45 0.0 0.0 0.0 0.16394845471450287 5.025760417925937E-4 46-47 0.0 0.0 0.0 0.18221098142234454 5.161591780572584E-4 48-49 0.0 0.0 0.0 0.20094891789944946 5.433254505865878E-4 50-51 0.0 0.0 0.0 0.2199177676930537 5.433254505865878E-4 52-53 0.0 0.0 0.0 0.26378450625978833 5.976579956452465E-4 54-55 0.0 0.0 0.0 0.3135938669423138 6.6557367696857E-4 56-57 0.0 0.0 0.0 0.3600006519905407 6.85948381365567E-4 58-59 0.0 0.0 0.0 0.3884437393287486 6.927399494978994E-4 60-61 0.0 0.0 0.0 0.4122346024963088 6.927399494978994E-4 62-63 0.0 0.0 0.0 0.4305922111580031 6.927399494978994E-4 64-65 0.0 0.0 0.0 0.43641937661554425 6.927399494978994E-4 66-67 0.0 0.0 0.0 0.4426812024335547 6.995315176302317E-4 68-69 0.0 0.0 0.0 0.44924185724938775 7.063230857625641E-4 70-71 0.0 0.0 0.0 0.45444419843875433 7.199062220272287E-4 72-73 0.0 0.0 0.0 0.45896059124675537 7.470724945565581E-4 74-75 0.0 0.0 0.0 0.46230204276786285 7.470724945565581E-4 76-77 0.0 0.0 0.0 0.4655484123351177 7.470724945565581E-4 78-79 0.0 0.0 0.0 0.4677149225693317 7.470724945565581E-4 80-81 0.0 0.0 0.0 0.46831937213310926 7.674471989535551E-4 82-83 0.0 0.0 0.0 0.46874724092544623 7.878219033505522E-4 84-85 0.0 0.0 0.0 0.4690664446276659 7.878219033505522E-4 86-87 0.0 0.0 0.0 0.4692566085353712 7.878219033505522E-4 88 0.0 0.0 0.0 0.4692837748079005 7.878219033505522E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21670 0.0 38.054832 1 GTATCAA 35485 0.0 31.69959 1 CGCTACG 315 1.8189894E-12 28.243824 94 ATCAACG 42520 0.0 25.839266 3 AACGCAG 43535 0.0 25.393404 6 CAACGCA 43590 0.0 25.195465 5 TCAACGC 43935 0.0 25.063774 4 TATCAAC 44790 0.0 24.984299 2 GTACTAG 2420 0.0 23.335281 1 ACGCAGA 47840 0.0 22.917337 7 CGCAGAG 48095 0.0 22.79583 8 GTACATG 31930 0.0 21.71736 1 TACATGG 31790 0.0 21.49952 2 GCAGAGT 52610 0.0 20.76055 9 ACATGGG 32075 0.0 20.71271 3 GAGTACT 33790 0.0 19.589243 12-13 CATGGGG 21785 0.0 19.002956 4 TAACGCC 965 0.0 18.932543 4 CAGAGTA 50240 0.0 18.747564 10-11 AGAGTAC 48445 0.0 18.71355 10-11 >>END_MODULE