##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138907_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6513405 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69382281617679 33.0 33.0 33.0 33.0 33.0 2 32.69469609213614 33.0 33.0 33.0 33.0 33.0 3 32.70150267026233 33.0 33.0 33.0 33.0 33.0 4 36.635132315586084 37.0 37.0 37.0 37.0 37.0 5 36.64720910184458 37.0 37.0 37.0 37.0 37.0 6 36.59611508880532 37.0 37.0 37.0 37.0 37.0 7 36.57125113515895 37.0 37.0 37.0 37.0 37.0 8 36.57376441354407 37.0 37.0 37.0 37.0 37.0 9 36.608568482997754 37.0 37.0 37.0 37.0 37.0 10-11 36.59169627867452 37.0 37.0 37.0 37.0 37.0 12-13 36.57953436029235 37.0 37.0 37.0 37.0 37.0 14-15 38.67045761778977 40.0 37.0 40.0 37.0 40.0 16-17 38.61406645218592 40.0 37.0 40.0 37.0 40.0 18-19 38.65881102127075 40.0 37.0 40.0 37.0 40.0 20-21 38.67489879422092 40.0 37.0 40.0 37.0 40.0 22-23 38.67115192151197 40.0 37.0 40.0 37.0 40.0 24-25 38.66704132791362 40.0 37.0 40.0 37.0 40.0 26-27 38.58431661661941 40.0 37.0 40.0 37.0 40.0 28-29 38.47054098557098 40.0 37.0 40.0 37.0 40.0 30-31 38.325850638662175 40.0 37.0 40.0 37.0 40.0 32-33 38.20721407516821 40.0 37.0 40.0 37.0 40.0 34-35 38.17847501883328 40.0 37.0 40.0 37.0 40.0 36-37 38.1729921166915 40.0 37.0 40.0 37.0 40.0 38-39 38.12402021438719 40.0 37.0 40.0 37.0 40.0 40-41 38.10144238736228 40.0 37.0 40.0 37.0 40.0 42-43 38.04762410586274 40.0 37.0 40.0 35.0 40.0 44-45 37.93890796022586 40.0 37.0 40.0 33.0 40.0 46-47 37.835221693530976 40.0 37.0 40.0 33.0 40.0 48-49 37.756078391065905 40.0 37.0 40.0 33.0 40.0 50-51 37.74339715263535 40.0 37.0 40.0 33.0 40.0 52-53 37.68866983027584 40.0 37.0 40.0 33.0 40.0 54-55 37.58340382203074 40.0 37.0 40.0 33.0 40.0 56-57 37.41843687754087 40.0 37.0 40.0 33.0 40.0 58-59 37.22723661387032 37.0 37.0 40.0 33.0 40.0 60-61 37.07069671073164 37.0 37.0 40.0 33.0 40.0 62-63 36.93556823497558 37.0 37.0 40.0 33.0 40.0 64-65 36.76397001978512 37.0 37.0 40.0 33.0 40.0 66-67 36.55768158503159 37.0 37.0 40.0 33.0 40.0 68-69 36.34771680762408 37.0 37.0 40.0 33.0 40.0 70-71 36.1429914320155 37.0 37.0 38.5 33.0 40.0 72-73 35.86360602190132 37.0 37.0 37.0 33.0 40.0 74-75 35.507052967295905 37.0 33.0 37.0 33.0 40.0 76-77 33.397237503275576 35.0 33.0 37.0 27.0 37.0 78-79 35.05083841278519 37.0 33.0 37.0 33.0 37.0 80-81 35.26509508342195 37.0 33.0 37.0 33.0 37.0 82-83 35.06479821763202 37.0 33.0 37.0 33.0 37.0 84-85 34.9136846697961 37.0 33.0 37.0 33.0 37.0 86-87 34.81399271147634 37.0 33.0 37.0 33.0 37.0 88-89 34.70521237910536 37.0 33.0 37.0 33.0 37.0 90-91 34.631016999485716 37.0 33.0 37.0 33.0 37.0 92-93 34.5952075605062 37.0 33.0 37.0 33.0 37.0 94-95 34.54375223318757 37.0 33.0 37.0 33.0 37.0 96-97 34.557918693358914 37.0 33.0 37.0 33.0 37.0 98-99 34.58635210006334 37.0 33.0 37.0 33.0 37.0 100 34.53219058435944 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 41.0 21 184.0 22 660.0 23 1840.0 24 4666.0 25 9399.0 26 17190.0 27 28002.0 28 43136.0 29 61732.0 30 84211.0 31 114331.0 32 154699.0 33 211309.0 34 297677.0 35 448679.0 36 829236.0 37 2036858.0 38 2112590.0 39 56955.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50092002570084 20.962123497617604 14.755953299387956 22.781003177293595 2 14.305386115982339 21.014625147121997 43.00893770932163 21.67105102757403 3 17.24109342720352 27.412859536167943 31.422260475033593 23.92378656159494 4 11.848871673111068 17.92411188924994 40.48851560742806 29.738500830210928 5 12.239819265038793 38.6029119945712 36.329523498078196 12.827745242311817 6 28.423151945871627 39.378297526409 18.838426291624735 13.36012423609464 7 25.16659105337377 33.90361876775665 24.10565595107321 16.824134227796367 8 24.074888633518107 36.77076736361396 21.493888373285554 17.660455629582376 9 25.70736811237747 16.81283445448272 22.065663044137438 35.41413438900237 10-11 23.79611519538134 27.475082727486484 29.310459577700044 19.418342499432132 12-13 24.61904219393864 24.910677627843462 29.616350623360375 20.853929554857526 14-15 21.71245301036862 26.093694465490785 28.064829378796496 24.129023145344103 16-17 20.435947096794994 29.128059747551394 28.759527466816508 21.676465688837098 18-19 20.389542796739953 28.07417932709543 31.139511515098476 20.396766361066142 20-21 21.564171522222377 27.42506095465339 31.053368417747624 19.95739910537661 22-23 21.082117754557945 26.814942415871695 31.178581236217955 20.924358593352405 24-25 20.6215458838084 27.0285187066671 31.62409418231161 20.72584122721289 26-27 20.5359616450902 27.42606317844018 31.287476488446742 20.75049868802288 28-29 20.5460580426912 27.852839393160917 31.11433935101056 20.486763213137323 30-31 21.150393976652357 27.428048158839424 30.938595464117896 20.482962400390324 32-33 20.938283531155225 27.751192522040498 30.72575295087605 20.584770995928228 34-35 20.76371509771601 27.715932505580128 30.90300342802646 20.6173489686774 36-37 20.97512314420594 27.361979175133143 31.073002216804706 20.589895463856205 38-39 20.783223599983096 27.882636794833232 30.912130248121255 20.42200935706242 40-41 21.130568787320883 27.83052690026009 30.55609261911024 20.482811693308786 42-43 21.132772644076994 27.849996208037243 30.203694857238467 20.8135362906473 44-45 21.022529458748867 28.332649317101303 29.90228380717801 20.742537416971814 46-47 21.21295280346491 27.850306306888022 29.49259202461027 21.444148865036798 48-49 21.39580322258953 28.126181374891118 29.457192770027497 21.020822632491853 50-51 21.038552977235202 28.32022881262388 29.262499202554515 21.378719007586398 52-53 21.3760823129708 28.33969768025064 28.80830117379694 21.475918832981616 54-55 21.431095722051946 28.11948821442544 28.89919401752032 21.550222046002297 56-57 21.571532213097104 28.22754491212425 28.688600720100826 21.51232215467781 58-59 21.337013097180023 28.283556074323883 29.095278753682628 21.284152074813463 60-61 21.38537109449508 28.327837862573773 28.841406100471907 21.445384942459235 62-63 21.489241416567744 28.178695204849873 28.772135671902987 21.559927706679392 64-65 21.241735907239693 28.30020682288535 28.85398781463116 21.604069455243796 66-67 21.588567299707385 28.471921275369784 28.357734768511822 21.581776656411012 68-69 21.39703751467268 28.412455219664267 28.67386688319065 21.516640382472403 70-71 21.475993476814327 27.715860654172985 28.6897024614663 22.118443407546387 72-73 21.698178950587003 27.97332564303178 28.655343775923146 21.67315163045807 74-75 21.12395910116856 28.401605102089327 28.75231377244447 21.72212202429764 76-77 21.40065479152871 28.227435454275778 28.440370435757767 21.931539318437746 78-79 21.550794734521457 28.349558730999036 28.226474296229178 21.873172238250334 80-81 21.695181037307243 28.066742160116377 28.379577552133856 21.858499250442527 82-83 21.90868199564462 27.713534913121673 28.54575444497881 21.8320286462549 84-85 22.203040028446424 27.788647823353564 28.191021780211038 21.817290367988974 86-87 21.297115833874226 28.23111813253797 28.331763532297266 22.14000250129054 88-89 21.976596378048956 27.913618315828977 28.366087086153602 21.74369821996846 90-91 21.999452856105453 27.82294499962521 28.620438259394902 21.55716388487443 92-93 22.060191723538626 27.889003856171374 28.106969800192548 21.94383462009745 94-95 21.83253434576395 27.968875085444022 28.22329909401024 21.975291474781788 96-97 21.851600596067705 27.9628012128668 28.5435513919563 21.642046799109195 98-99 22.81679762852498 30.040876832235046 28.646408647186444 18.49591689205353 100 22.288927504396785 30.734591380589183 22.424503115954725 24.551977999059307 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2466.0 1 2139.0 2 3035.5 3 4521.0 4 6245.5 5 10687.5 6 14437.0 7 16919.5 8 18398.5 9 17483.5 10 14928.0 11 12649.5 12 13770.5 13 18904.0 14 30993.5 15 47511.0 16 60286.5 17 66508.5 18 66000.5 19 59609.5 20 50540.0 21 41299.5 22 35322.0 23 34545.0 24 37912.5 25 46305.0 26 62474.5 27 79993.5 28 87701.0 29 96718.0 30 104062.0 31 109901.0 32 128433.5 33 150367.0 34 174014.5 35 194100.0 36 219461.5 37 242246.0 38 238382.5 39 234127.0 40 247735.5 41 254724.0 42 253555.0 43 258818.5 44 263331.0 45 266340.0 46 266770.0 47 266400.5 48 263793.0 49 255290.5 50 242737.0 51 226859.0 52 208814.0 53 190066.0 54 171385.5 55 152639.5 56 133530.5 57 115948.5 58 100610.0 59 88413.0 60 72740.5 61 52955.0 62 38616.0 63 27990.0 64 19809.0 65 13753.0 66 9710.0 67 7226.5 68 5318.5 69 3945.0 70 3036.0 71 2081.0 72 1493.0 73 1042.0 74 660.0 75 416.0 76 280.5 77 205.0 78 146.5 79 98.0 80 70.0 81 49.5 82 35.5 83 23.5 84 18.5 85 13.5 86 7.0 87 4.5 88 3.0 89 1.0 90 0.0 91 0.5 92 1.0 93 1.0 94 2.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015813541457962463 3 1.9958838733350682E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 2.3029429307712327E-5 12-13 0.007354064425596135 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 7.67721782539427E-6 24-25 2.533856741114705E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 6.948810506477952E-4 36-37 0.026590249364844377 38-39 0.12483216633736806 40-41 0.14599770428298062 42-43 0.03291278284496032 44-45 0.0024839351884713336 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.00717020081007628 64-65 0.0749983982130183 66-67 0.17850385503379954 68-69 0.18708628310451775 70-71 0.07086246371609368 72-73 0.0023830878193671053 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 96.0 20-21 360.0 22-23 805.0 24-25 1688.0 26-27 2753.0 28-29 5850.0 30-31 10611.0 32-33 11789.0 34-35 14740.0 36-37 16478.0 38-39 17281.0 40-41 25472.0 42-43 34464.0 44-45 41728.0 46-47 43509.0 48-49 33249.0 50-51 27743.0 52-53 31979.0 54-55 28700.0 56-57 25662.0 58-59 20025.0 60-61 36532.0 62-63 30812.0 64-65 45816.0 66-67 60273.0 68-69 58080.0 70-71 60502.0 72-73 59576.0 74-75 57868.0 76-77 53974.0 78-79 59128.0 80-81 64927.0 82-83 59300.0 84-85 65307.0 86-87 71160.0 88-89 78386.0 90-91 80960.0 92-93 78850.0 94-95 86023.0 96-97 223579.0 98-99 409739.0 100-101 4377631.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.34525028429418 #Duplication Level Percentage of deduplicated Percentage of total 1 85.2964764430584 65.11980842413695 2 9.231652039868209 14.095855710425065 3 2.773971537779303 6.353386539998078 4 1.126798934296838 3.4410298663587224 5 0.5762532983710557 2.199710114564415 6 0.3281859711661657 1.5033264065085044 7 0.19061451632491794 1.0186759069651876 8 0.11385731374081139 0.695397209139172 9 0.08697397583609721 0.5976044958084296 >10 0.2619312602764352 3.1222448085268146 >50 0.007950602918087862 0.42105814260366753 >100 0.004588357449472127 0.7531440035641196 >500 4.386758319149331E-4 0.2577118304940106 >1k 3.0707308225049574E-4 0.4210465409069081 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5352952871808216E-5 0.0 0.0 0.0 3 0.0 1.5352952871808216E-5 0.0 0.0 0.0 4 0.0 1.5352952871808216E-5 0.0 0.0 0.0 5 0.0 1.5352952871808216E-5 0.0 0.0 0.0 6 0.0 1.5352952871808216E-5 0.0 0.0 0.0 7 0.0 1.5352952871808216E-5 0.0 0.0 0.0 8 0.0 1.5352952871808216E-5 0.0 0.0 0.0 9 0.0 4.605885861542465E-5 0.0 0.0 0.0 10-11 0.0 4.605885861542465E-5 0.0 0.0 0.0 12-13 0.0 4.605885861542465E-5 0.0 0.0 0.0 14-15 0.0 8.44412407949452E-5 0.0 0.0 0.0 16-17 0.0 9.21177172308493E-5 0.0 0.0 0.0 18-19 0.0 9.979419366675341E-5 0.0 3.838238217952054E-5 0.0 20-21 0.0 1.0747067010265753E-4 0.0 9.21177172308493E-5 0.0 22-23 0.0 1.2282362297446573E-4 0.0 3.454414396156849E-4 0.0 24-25 0.0 1.2282362297446573E-4 0.0 0.001136118512513808 0.0 26-27 0.0 1.2282362297446573E-4 0.0 0.0026790902761305337 0.0 28-29 0.0 1.2282362297446573E-4 0.0 0.00762274110085278 0.0 30-31 0.0 1.5352952871808216E-4 0.0 0.008421094650186808 0.0 32-33 0.0 1.5352952871808216E-4 0.0 0.009856595743700874 0.0 34-35 0.0 2.1494134020531505E-4 0.0 0.011315126266522656 0.0 36-37 0.0 2.610001988207397E-4 0.0 0.013280304234114108 0.0 38-39 0.0 2.610001988207397E-4 0.0 0.017218336645732916 0.0 40-41 0.0 2.763531516925479E-4 0.0 0.021601604690634164 0.0 42-43 0.0 2.84029628128452E-4 0.0 0.026007902164843118 0.0 44-45 0.0 3.377649631797808E-4 0.0 0.03042187611548798 0.0 46-47 0.0 3.8382382179520544E-4 0.0 0.03478211473108152 0.0 48-49 0.0 3.8382382179520544E-4 0.0 0.040746736921779006 0.0 50-51 0.0 4.452356332824383E-4 0.0 0.046243094049886344 0.0 52-53 0.0 4.452356332824383E-4 0.0 0.06525772618162083 0.0 54-55 0.0 4.452356332824383E-4 0.0 0.09012183335751424 0.0 56-57 0.0 4.452356332824383E-4 0.0 0.1078161115422732 0.0 58-59 0.0 4.529121097183424E-4 0.0 0.20245938952053494 0.0 60-61 0.0 4.759415390260547E-4 0.0 0.2904471624288678 0.0 62-63 7.676476435904108E-6 5.527063033850958E-4 0.0 0.29393995920720417 0.0 64-65 1.5352952871808216E-5 6.448240206159452E-4 0.0 0.2971256969281044 0.0 66-67 1.5352952871808216E-5 6.448240206159452E-4 0.0 0.3022612596637243 0.0 68-69 1.5352952871808216E-5 6.525004970518492E-4 0.0 0.30843314671819116 0.0 70-71 1.5352952871808216E-5 6.601769734877534E-4 0.0 0.3133767975429134 0.0 72-73 1.5352952871808216E-5 6.601769734877534E-4 0.0 0.3176065360590966 0.0 74-75 1.5352952871808216E-5 6.755299263595616E-4 0.0 0.3212375094132792 0.0 76-77 1.5352952871808216E-5 6.832064027954656E-4 0.0 0.32500665934330814 0.0 78-79 1.5352952871808216E-5 6.908828792313698E-4 0.0 0.3272712198918999 0.0 80-81 1.5352952871808216E-5 6.908828792313698E-4 0.0 0.3281002793469775 0.0 82-83 1.5352952871808216E-5 6.908828792313698E-4 0.0 0.32872975041472163 0.0 84-85 1.5352952871808216E-5 6.908828792313698E-4 0.0 0.329021456519286 0.0 86-87 1.5352952871808216E-5 7.13912308539082E-4 0.0 0.32912125071295273 0.0 88 1.5352952871808216E-5 7.522946907186027E-4 0.0 0.32913660366582453 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11395 0.0 56.476727 1 GTATCAA 21410 0.0 41.419342 1 ATCAACG 27495 0.0 31.825165 3 TATCAAC 28055 0.0 31.40729 2 TCAACGC 28045 0.0 31.278608 4 CAACGCA 28785 0.0 30.429153 5 AACGCAG 29710 0.0 29.676256 6 GTGGTAT 4235 0.0 27.124779 1 ACCGAGG 2490 0.0 26.956944 90-91 CGCTACG 145 7.718621E-5 26.70517 94 ACGCAGA 32840 0.0 26.688776 7 AGACCGA 2445 0.0 26.677624 88-89 CGCAGAG 33215 0.0 26.426764 8 GACCGAG 2455 0.0 26.298584 90-91 GAGACCG 2465 0.0 25.6696 88-89 GCAGAGT 36420 0.0 24.041435 9 TACATGG 21915 0.0 23.72696 2 CCCACGA 2700 0.0 23.062925 82-83 ACATGGG 22045 0.0 23.034197 3 TGGTATC 4705 0.0 22.935474 2 >>END_MODULE