##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138906_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7862313 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.74110036066995 33.0 33.0 33.0 33.0 33.0 2 32.682713089646775 33.0 33.0 33.0 33.0 33.0 3 32.76178651244233 33.0 33.0 33.0 33.0 33.0 4 36.73972951725529 37.0 37.0 37.0 37.0 37.0 5 36.73772336461293 37.0 37.0 37.0 37.0 37.0 6 36.72867780766296 37.0 37.0 37.0 37.0 37.0 7 36.71671046421072 37.0 37.0 37.0 37.0 37.0 8 36.70714457692031 37.0 37.0 37.0 37.0 37.0 9 36.705942894921634 37.0 37.0 37.0 37.0 37.0 10-11 36.70974012354888 37.0 37.0 37.0 37.0 37.0 12-13 36.71131567771469 37.0 37.0 37.0 37.0 37.0 14-15 39.00243249028625 40.0 40.0 40.0 37.0 40.0 16-17 38.941967141221674 40.0 40.0 40.0 37.0 40.0 18-19 38.96108040979799 40.0 40.0 40.0 37.0 40.0 20-21 38.96674007589793 40.0 40.0 40.0 37.0 40.0 22-23 38.96761268504862 40.0 40.0 40.0 37.0 40.0 24-25 38.96532003856947 40.0 40.0 40.0 37.0 40.0 26-27 38.89885514807388 40.0 40.0 40.0 37.0 40.0 28-29 38.81485494597908 40.0 37.0 40.0 37.0 40.0 30-31 38.70459070619551 40.0 37.0 40.0 37.0 40.0 32-33 38.61566788272571 40.0 37.0 40.0 37.0 40.0 34-35 38.588702754067604 40.0 37.0 40.0 37.0 40.0 36-37 38.562287009674094 40.0 37.0 40.0 37.0 40.0 38-39 38.51493946631277 40.0 37.0 40.0 37.0 40.0 40-41 38.48634513274716 40.0 37.0 40.0 37.0 40.0 42-43 38.458316493152616 40.0 37.0 40.0 37.0 40.0 44-45 38.373413850990346 40.0 37.0 40.0 37.0 40.0 46-47 38.01485437395128 40.0 37.0 40.0 35.0 40.0 48-49 38.17828348588124 40.0 37.0 40.0 37.0 40.0 50-51 38.18087513558186 40.0 37.0 40.0 37.0 40.0 52-53 38.140305331968065 40.0 37.0 40.0 37.0 40.0 54-55 38.04540223510716 40.0 37.0 40.0 35.0 40.0 56-57 37.88265497569348 40.0 37.0 40.0 33.0 40.0 58-59 37.72038321151363 40.0 37.0 40.0 33.0 40.0 60-61 37.545291643292316 40.0 37.0 40.0 33.0 40.0 62-63 37.40797781778727 37.0 37.0 40.0 33.0 40.0 64-65 37.22689134539374 37.0 37.0 40.0 33.0 40.0 66-67 37.00254268536972 37.0 37.0 40.0 33.0 40.0 68-69 36.78661208661252 37.0 37.0 40.0 33.0 40.0 70-71 36.55699408945058 37.0 37.0 40.0 33.0 40.0 72-73 36.27451390454701 37.0 37.0 37.0 33.0 40.0 74-75 35.92634233257743 37.0 37.0 37.0 33.0 40.0 76-77 33.78365711512822 35.0 33.0 37.0 30.0 37.0 78-79 35.39572897448565 37.0 33.0 37.0 33.0 37.0 80-81 35.5664636673107 37.0 35.0 37.0 33.0 37.0 82-83 35.38398329824257 37.0 33.0 37.0 33.0 37.0 84-85 35.22402845254557 37.0 33.0 37.0 33.0 37.0 86-87 35.11979088100003 37.0 33.0 37.0 33.0 37.0 88-89 34.94037889019438 37.0 33.0 37.0 33.0 37.0 90-91 34.883852866624366 37.0 33.0 37.0 33.0 37.0 92-93 34.9282105401402 37.0 33.0 37.0 33.0 37.0 94-95 34.89366263353035 37.0 33.0 37.0 33.0 37.0 96-97 34.87223523137065 37.0 33.0 37.0 33.0 37.0 98-99 34.875205682070415 37.0 33.0 37.0 33.0 37.0 100 34.815555783853455 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 4.0 20 22.0 21 120.0 22 429.0 23 1372.0 24 3580.0 25 7628.0 26 13977.0 27 23105.0 28 35437.0 29 52114.0 30 72574.0 31 99463.0 32 136804.0 33 191819.0 34 278905.0 35 442165.0 36 867960.0 37 2430181.0 38 3113238.0 39 91414.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.27584338094909 20.41114364182652 14.61980717379224 23.693205803432146 2 14.238959364682533 20.64742337903767 42.918422837972834 22.19519441830697 3 17.919586767914225 26.086076705417348 30.71440936019718 25.27992716647124 4 12.236271946944875 17.912845749081725 39.55236836793448 30.298513936038923 5 13.108801443035912 37.684177671379906 35.952282744276395 13.254738141307781 6 29.45387699523028 38.12537099451523 19.09187538069268 13.328876629561808 7 26.05588202860914 32.86869907112576 23.62650787370078 17.44891102656432 8 23.58796959622442 37.5203963515571 21.42307231981225 17.468561732406226 9 25.078637800352137 17.417927777741742 22.020784468896114 35.48264995301001 10-11 23.81135687457037 27.04128411048856 29.274841314877996 19.872517700063067 12-13 24.5254003939783 24.479671792022504 29.65525912948642 21.339668684512777 14-15 21.68457297489937 25.955682507170604 27.343416625616406 25.016327892313623 16-17 21.047088814703766 29.14284893007948 28.097374144224478 21.712688110992275 18-19 21.02912972302171 28.232709636464488 29.983053333033165 20.755107307480635 20-21 21.793017080810912 27.441881081983112 29.927089973793446 20.83801186341253 22-23 21.524268846216664 27.269475598357808 29.8258617364931 21.380393818932433 24-25 21.251322189444583 27.438548603808023 29.96858422539974 21.34154498134766 26-27 21.21510833918265 27.62112793485957 29.826436908567928 21.337326817389854 28-29 21.128183166239598 27.745735494213164 29.812591151296896 21.31349018825034 30-31 21.44116611947689 27.563150661227642 29.716756341569766 21.278926877725702 32-33 21.249221842172364 27.741297840913532 29.64546504039019 21.364015276523922 34-35 21.325815266117143 27.757892324494886 29.661165982290715 21.25512642709726 36-37 21.361569266447 27.65779302165981 29.627836041845534 21.35280167004766 38-39 21.240557642566028 27.856755302152862 29.58502636733774 21.31766068794337 40-41 21.539750733673653 27.741334954838088 29.427024990292793 21.291889321195463 42-43 21.394356828432816 27.816029643635115 29.24605595079927 21.543557577132802 44-45 21.486973916263867 27.96529351907794 29.053486116083572 21.494246448574618 46-47 21.58892825570451 27.847454155668377 28.714320421624183 21.84929716700293 48-49 21.499827085389615 28.06815134111989 28.72410081256288 21.707920760927617 50-51 21.47082310145522 28.1564414569861 28.572138283311745 21.800597158246934 52-53 21.565898100867877 28.003874699161223 28.402176014788473 22.02805118518243 54-55 21.691432011492846 27.777556843934608 28.60372221305012 21.927288931522426 56-57 21.592907551717946 27.693652452121924 28.658319860037718 22.055120136122408 58-59 21.445360204067594 27.61613626700074 28.745850807957723 22.192652720973946 60-61 21.602506422681135 27.635849513978506 28.919744805064823 21.84189925827554 62-63 21.268824845875077 27.93235488749594 28.79091597151356 22.007904295115427 64-65 21.211858939376242 28.14703421751742 28.575689554989175 22.065417288117164 66-67 21.336046478607866 28.50623139713232 28.1529379843724 22.004784139887416 68-69 21.296315341151338 28.491749509268317 28.052784064323035 22.159151085257314 70-71 21.41153488587724 27.983630468934663 28.011552236006715 22.593282409181377 72-73 21.580410407325136 27.74158999612762 27.97537026420066 22.70262933234658 74-75 21.59766109321879 27.858792210034206 28.058210397472877 22.48533629927413 76-77 21.95249278034467 27.70304443088713 27.557966894339287 22.786495894428914 78-79 22.016408552924236 27.83302116079927 27.172317131248146 22.978253155028348 80-81 22.016038106914017 28.043833981632872 27.238056220576883 22.70207169087623 82-83 22.039191013937796 27.830541704741957 27.363902692402714 22.766364588917533 84-85 22.174350991049614 28.11170769071364 27.23998562866301 22.47395568957374 86-87 22.28243406513519 28.10905962619856 27.286783827107392 22.321722481558854 88-89 22.2575563854675 28.081701787222773 27.48168956969294 22.179052257616785 90-91 22.190879529266027 27.94416227934345 27.4401052957572 22.424852895633325 92-93 22.194097982567904 27.610544208350714 27.585299054298808 22.61005875478258 94-95 21.700051693714148 27.934170578131212 27.959910153861312 22.40586757429332 96-97 21.808173133108816 27.889406892006114 28.03166980630295 22.270750168582122 98-99 23.037567301340488 29.713853247200976 28.39559193411224 18.852987517346296 100 22.107020061965635 30.573692099381528 22.107500473020114 25.211787365632727 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1791.0 1 1631.5 2 2229.5 3 3191.5 4 4299.5 5 6920.0 6 9142.5 7 10533.5 8 11457.5 9 11460.0 10 10855.0 11 10107.5 12 10841.0 13 13890.0 14 21285.5 15 31649.0 16 40376.5 17 46102.5 18 47638.5 19 44993.0 20 40535.0 21 35708.5 22 32514.5 23 33162.0 24 37679.0 25 46125.0 26 58866.0 27 73840.0 28 89052.0 29 106947.5 30 124509.5 31 141426.5 32 161438.5 33 181997.5 34 202270.5 35 221625.0 36 245144.0 37 267623.5 38 279957.5 39 289345.0 40 302928.0 41 315416.5 42 323041.0 43 330817.0 44 339057.0 45 346667.0 46 350953.5 47 350518.0 48 346027.0 49 335687.5 50 321463.0 51 303621.0 52 279329.5 53 251546.0 54 223778.5 55 195345.0 56 168053.0 57 142870.5 58 121784.5 59 105070.5 60 86769.5 61 68533.5 62 52632.0 63 39099.5 64 28657.5 65 20831.0 66 15738.5 67 12211.5 68 9113.0 69 6417.0 70 4426.0 71 3037.0 72 2079.5 73 1386.5 74 887.0 75 584.0 76 400.5 77 289.5 78 200.0 79 125.0 80 81.0 81 62.0 82 45.0 83 30.0 84 23.0 85 19.0 86 15.5 87 11.0 88 4.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.9603723484425E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0015707845770067917 12-13 0.00906221871350072 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.006328225901045085 36-37 0.04745579781985195 38-39 0.15584731163226892 40-41 0.18488536224648508 42-43 0.056511371164470435 44-45 0.005080730790402571 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.014557708884271513 64-65 0.10001439917312492 66-67 0.22235026567868224 68-69 0.24733756709332316 70-71 0.11015370297189765 72-73 0.007136738421332221 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 356.0 22-23 876.0 24-25 1899.0 26-27 2931.0 28-29 5362.0 30-31 11843.0 32-33 13189.0 34-35 16084.0 36-37 20644.0 38-39 21842.0 40-41 37402.0 42-43 48817.0 44-45 61830.0 46-47 57200.0 48-49 52384.0 50-51 28729.0 52-53 10079.0 54-55 9776.0 56-57 9235.0 58-59 28056.0 60-61 50156.0 62-63 51826.0 64-65 51932.0 66-67 64793.0 68-69 62761.0 70-71 65038.0 72-73 61877.0 74-75 60408.0 76-77 59043.0 78-79 62608.0 80-81 64025.0 82-83 64164.0 84-85 70343.0 86-87 74874.0 88-89 81293.0 90-91 82986.0 92-93 81569.0 94-95 95660.0 96-97 270136.0 98-99 536169.0 100-101 5412032.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.09629988403712 #Duplication Level Percentage of deduplicated Percentage of total 1 87.23601840913555 71.61754328005773 2 8.698446512017163 14.282205467516354 3 2.257153464629491 5.559118431495482 4 0.8682887868599514 2.851331865280054 5 0.3986237089812425 1.636276577670561 6 0.19257091387743852 0.9485615696775166 7 0.11427083419113114 0.6566848870227929 8 0.06936669259748066 0.4555799037957272 9 0.0439228209970148 0.3245310975891428 >10 0.11866012178292693 1.414925948082056 >50 0.001928071310275206 0.10447919587834242 >100 6.980366775749696E-4 0.11671961580417725 >500 5.162694272538977E-5 0.032042160130000226 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2718903457544873E-5 0.0 0.0 0.0 3 0.0 1.2718903457544873E-5 0.0 0.0 0.0 4 0.0 6.359451728772436E-5 0.0 0.0 0.0 5 0.0 8.903232420281411E-5 0.0 0.0 0.0 6 0.0 8.903232420281411E-5 0.0 0.0 0.0 7 0.0 8.903232420281411E-5 0.0 2.5437806915089746E-5 0.0 8 0.0 1.399079380329936E-4 0.0 3.8156710372634616E-5 0.0 9 0.0 2.925347795235321E-4 0.0 5.087561383017949E-5 0.0 10-11 0.0 3.052536829810769E-4 0.0 5.723506555895193E-5 0.0 12-13 0.0 3.179725864386218E-4 0.0 6.359451728772436E-5 6.3594517287724365E-6 14-15 0.0 4.324427175565257E-4 0.0 6.359451728772436E-5 1.2718903457544873E-5 16-17 0.0 4.4516162101407053E-4 0.0 6.359451728772436E-5 1.2718903457544873E-5 18-19 0.0 4.7695887965793274E-4 0.0 6.359451728772436E-5 1.2718903457544873E-5 20-21 0.0 5.151155900305674E-4 0.0 1.3354848630422117E-4 1.2718903457544873E-5 22-23 0.0 5.850695590470642E-4 0.0 1.4626738976176605E-4 1.2718903457544873E-5 24-25 0.0 6.295857211484712E-4 0.0 1.717051966768558E-4 1.2718903457544873E-5 26-27 0.0 6.486640763347885E-4 0.0 2.098619070494904E-4 1.2718903457544873E-5 28-29 0.0 6.55023528063561E-4 0.0 4.578805244716154E-4 1.2718903457544873E-5 30-31 0.0 7.949314660965546E-4 0.0 0.0012337336353818527 1.2718903457544873E-5 32-33 0.0 8.330881764691891E-4 0.0 0.0028363154710325067 1.2718903457544873E-5 34-35 0.0 9.411988558583206E-4 0.0 0.004559726889529837 1.2718903457544873E-5 36-37 0.0 0.0010302311800611348 0.0 0.007911157950592912 1.2718903457544873E-5 38-39 0.0 0.0010620284387049968 0.0 0.06430677588134688 1.2718903457544873E-5 40-41 0.0 0.0011574202146365834 0.0 0.12535751247756227 1.2718903457544873E-5 42-43 0.0 0.0011764985698229007 0.0 0.13777752170385482 1.2718903457544873E-5 44-45 0.0 0.0012464525388393975 0.0 0.1586619611811435 1.2718903457544873E-5 46-47 0.0 0.001297328152669577 0.0 0.18386446838226866 1.2718903457544873E-5 48-49 0.0 0.0013164065078558943 0.0 0.2053403368703332 1.2718903457544873E-5 50-51 0.0 0.0014881117045327501 0.0 0.22648551386850152 1.2718903457544873E-5 52-53 0.0 0.00151354951144784 0.0 0.5822586813829467 1.2718903457544873E-5 54-55 0.0 0.0015389873183629297 0.0 1.0625499137467562 1.2718903457544873E-5 56-57 0.0 0.0015644251252780192 0.0 1.5846545412272444 3.179725864386218E-5 58-59 0.0 0.001589862932193109 0.0 2.1323178052056693 5.087561383017949E-5 60-61 0.0 0.0016407385460232887 0.0 2.2908525773522372 5.723506555895193E-5 62-63 0.0 0.0016598169012096058 0.0 2.2963980192597266 6.99539690164968E-5 64-65 0.0 0.0017679275805987374 0.0 2.301002262311358 7.631342074526923E-5 66-67 0.0 0.0018124437427001444 0.0 2.3053902840042113 7.631342074526923E-5 68-69 0.0 0.0018569599048015514 0.0 2.309911854183368 1.0811067938913143E-4 70-71 0.0 0.0018696788082590962 0.0 2.3139055898690373 1.1447013111790385E-4 72-73 0.0 0.0018696788082590962 0.0 2.317301537092202 1.1447013111790385E-4 74-75 0.0 0.001926913873818048 0.0 2.320086976949404 1.1447013111790385E-4 76-77 0.0 0.002028665101478407 0.0 2.322993246389453 1.1447013111790385E-4 78-79 0.0 0.0020604623601222696 0.0 2.324939238618457 1.1447013111790385E-4 80-81 0.0 0.002079540715308587 0.0 2.3254734325636743 1.1447013111790385E-4 82-83 0.0 0.002104978522223676 0.0 2.3259440319916034 1.1447013111790385E-4 84-85 0.0 0.0021113379739524487 0.0 2.3261729722538393 1.2082958284667628E-4 86-87 0.0 0.0021494946843250836 0.0 2.3263319585470588 1.2718903457544872E-4 88 0.0 0.0022766837189005323 0.0 2.326351036902245 1.2718903457544872E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10105 0.0 49.439163 1 ATCTCGT 4835 0.0 44.68791 94 GTATCAA 18500 0.0 38.935585 1 TATCTCG 6355 0.0 36.09318 94 TCAACGC 21965 0.0 32.155872 4 ATCAACG 22065 0.0 32.01014 3 CAACGCA 22405 0.0 31.545092 5 AACGCAG 23120 0.0 30.591362 6 TATCAAC 23210 0.0 30.50711 2 ACGCAGA 26020 0.0 27.16628 7 CGCAGAG 26300 0.0 26.843817 8 CGCTATC 9820 0.0 24.002893 94 GCAGAGT 31000 0.0 22.647032 9 GTGGTAT 5040 0.0 22.54779 1 CTATCTC 11345 0.0 21.27907 94 GCTATCT 10805 0.0 20.75315 92-93 GTACATG 20965 0.0 20.514523 1 GAGTACT 20085 0.0 20.435438 12-13 TACATGG 20565 0.0 20.084652 2 TGGTATC 5190 0.0 19.959156 2 >>END_MODULE