##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138904_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7476436 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.187390623018775 30.0 18.0 32.0 18.0 33.0 2 26.57660802553516 28.0 18.0 32.0 18.0 33.0 3 29.736490622002247 32.0 27.0 33.0 25.0 33.0 4 30.86786926284128 33.0 31.0 33.0 27.0 33.0 5 32.39819775090698 33.0 33.0 33.0 32.0 34.0 6 36.60279857943009 38.0 37.0 38.0 34.0 38.0 7 36.778393341426316 38.0 37.0 38.0 34.0 38.0 8 37.07067926482618 38.0 38.0 38.0 36.0 38.0 9 37.176665325564215 38.0 38.0 38.0 36.0 38.0 10-11 37.187822312663414 38.0 38.0 38.0 36.0 38.0 12-13 37.24436322333261 38.0 38.0 38.0 36.0 38.0 14-15 37.23535171036039 38.0 38.0 38.0 36.0 38.0 16-17 37.218063860909126 38.0 38.0 38.0 36.0 38.0 18-19 37.23863268541321 38.0 38.0 38.0 36.0 38.0 20-21 37.256583657048665 38.0 38.0 38.0 36.0 38.0 22-23 37.26743506007756 38.0 38.0 38.0 37.0 38.0 24-25 37.26452188765235 38.0 38.0 38.0 37.0 38.0 26-27 37.222000543475346 38.0 38.0 38.0 36.0 38.0 28-29 37.19620082355678 38.0 38.0 38.0 36.0 38.0 30-31 37.2015604752977 38.0 38.0 38.0 36.0 38.0 32-33 37.190105764934934 38.0 38.0 38.0 36.0 38.0 34-35 37.165846694128206 38.0 38.0 38.0 36.0 38.0 36-37 37.14752528658436 38.0 38.0 38.0 36.0 38.0 38-39 37.13091849419039 38.0 38.0 38.0 36.0 38.0 40-41 37.10659808384418 38.0 38.0 38.0 36.0 38.0 42-43 37.072387301565854 38.0 38.0 38.0 36.0 38.0 44-45 37.01955928443324 38.0 38.0 38.0 36.0 38.0 46-47 36.98496439034666 38.0 38.0 38.0 36.0 38.0 48-49 36.94565375401034 38.0 38.0 38.0 36.0 38.0 50-51 36.90876298436474 38.0 38.0 38.0 36.0 38.0 52-53 36.88634056715262 38.0 38.0 38.0 36.0 38.0 54-55 36.862104942531104 38.0 38.0 38.0 35.5 38.0 56-57 36.86328871498476 38.0 38.0 38.0 35.5 38.0 58-59 36.852535081800625 38.0 38.0 38.0 35.0 38.0 60-61 36.8688239407782 38.0 38.0 38.0 35.0 38.0 62-63 36.86542913390633 38.0 38.0 38.0 35.0 38.0 64-65 36.863309346843295 38.0 38.0 38.0 35.0 38.0 66-67 36.85627893445497 38.0 38.0 38.0 35.0 38.0 68-69 36.8687726058497 38.0 38.0 38.0 35.0 38.0 70-71 36.853662392853515 38.0 38.0 38.0 35.0 38.0 72-73 36.84460505829414 38.0 38.0 38.0 35.0 38.0 74-75 36.86575272750887 38.0 38.0 38.0 35.0 38.0 76-77 36.84940604970073 38.0 38.0 38.0 35.0 38.0 78-79 36.82792509956265 38.0 38.0 38.0 35.0 38.0 80-81 36.822242348724714 38.0 38.0 38.0 35.0 38.0 82-83 36.76839927794357 38.0 38.0 38.0 35.0 38.0 84-85 36.773229025602646 38.0 38.0 38.0 35.0 38.0 86-87 36.76724851602679 38.0 38.0 38.0 35.0 38.0 88-89 36.74885414399337 38.0 38.0 38.0 35.0 38.0 90-91 36.73133866456544 38.0 38.0 38.0 35.0 38.0 92-93 36.73561804939249 38.0 38.0 38.0 35.0 38.0 94-95 36.68140297007615 38.0 38.0 38.0 34.5 38.0 96-97 36.644339755905534 38.0 38.0 38.0 34.0 38.0 98-99 36.66921059128951 38.0 38.0 38.0 34.0 38.0 100 35.07249936825228 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 15.0 19 43.0 20 91.0 21 234.0 22 669.0 23 1985.0 24 4832.0 25 9715.0 26 16896.0 27 27438.0 28 40979.0 29 59668.0 30 80792.0 31 104919.0 32 135388.0 33 180872.0 34 266964.0 35 494219.0 36 1528937.0 37 4521776.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.26891743606178 18.14615948026573 13.451128318359176 22.13379476531331 2 14.102421941868526 20.553180088630693 42.58591039206997 22.758487577430806 3 18.314113837127742 27.13338280432013 30.84095149079053 23.71155186776159 4 11.72517226122179 18.420916062145118 41.25564640692437 28.598265269708723 5 12.399063917736475 38.61733919044614 35.717669756533546 13.265927135283844 6 27.633505880011466 39.18099424712139 19.95331729805304 13.232182574814106 7 25.058263054749613 34.14489203144386 24.173603572611334 16.62324134119519 8 23.42462371108373 37.06370254490241 22.209004397282342 17.302669346731516 9 25.88762881137483 17.042478528539533 22.219798310317913 34.85009434976772 10-11 23.309903274768885 27.49583491385468 29.58826237528148 19.605999436094955 12-13 24.45310171851936 25.45697575689807 29.68895874986424 20.400963774718328 14-15 21.72109143982507 26.411702046269102 27.928487584191185 23.93871892971464 16-17 20.572944114013684 29.6128663443384 28.545559675759947 21.268629865887974 18-19 20.540977010971538 28.554260345437317 30.72924719746146 20.17551544612968 20-21 21.799020707721414 27.58161354169349 30.511144022441528 20.10822172814357 22-23 21.449442466823058 27.523756815548396 30.3105164685051 20.716284249123447 24-25 20.950244346042663 27.66128434056333 30.587811706497405 20.800659606896605 26-27 20.860590722335136 27.86813513501581 30.456681204981408 20.81459293766765 28-29 20.766687422266887 27.985379883700823 30.50830964642844 20.739623047603853 30-31 21.064332947288342 27.784651893761435 30.42209439828679 20.72892076066343 32-33 20.883470776514777 27.87717543713006 30.349365399795573 20.889988386559587 34-35 20.994031383061895 27.946995763326427 30.366915633806247 20.69205721980543 36-37 20.968675575997395 27.844965501687913 30.33972990101286 20.846629021301833 38-39 20.80309215017065 27.958648464163822 30.424395904436864 20.81386348122867 40-41 21.06775821229401 27.870774496158628 30.273483707120825 20.787983584426538 42-43 21.025060407528688 27.874635443695496 30.121678245108818 20.978625903667 44-45 21.076725707571498 28.085773003080984 29.880208403406566 20.957292885940955 46-47 21.079115214992143 28.047476102770773 29.677248851240577 21.196159830996507 48-49 21.134425735017086 28.150857637015193 29.575724723492275 21.13899190447545 50-51 21.10843402478099 28.318517253415216 29.359387837928608 21.213660883875182 52-53 21.195542942090484 28.30532337799937 29.251130832881106 21.24800284702904 54-55 21.266719375110206 28.26671634645536 29.23021270833914 21.236351570095298 56-57 21.241663596900004 28.28307533987111 29.19917031612615 21.276090747102735 58-59 21.172421880331825 28.30286144992849 29.292010872823482 21.2327057969162 60-61 21.236801925691733 28.279777598829163 29.280835991258996 21.202584484220104 62-63 21.159070059193393 28.240916301243242 29.28319470939061 21.316818930172758 64-65 21.138262171824863 28.23132250901745 29.315036759167356 21.31537855999033 66-67 21.22722222423569 28.32774438309319 29.084840847675746 21.360192544995368 68-69 21.2630006861404 28.272628579561786 29.155441300708507 21.308929433589306 70-71 21.228695308911462 28.109574709405344 29.155101945262697 21.506628036420498 72-73 21.265442739323184 28.094645819736357 29.21566446791634 21.424246973024115 74-75 21.218787207302555 28.184473806059003 29.084047162323056 21.512691824315386 76-77 21.248751116651103 28.16643922162409 28.997510518740405 21.5872991429844 78-79 21.31586392446207 28.23522152728584 28.918975865270376 21.529938682981708 80-81 21.31027985899898 28.22557518634829 28.888105855168984 21.576039099483747 82-83 21.418034195706436 28.181083738494905 28.972096910334212 21.428785155464443 84-85 21.521878318755363 28.23767170326948 28.772125366056763 21.468324611918398 86-87 21.30690700548648 28.27759508344346 28.849560916604705 21.56593699446535 88-89 21.417063203127654 28.255934308833513 28.777610831970975 21.549391656067858 90-91 21.461906876093053 28.208059167948434 28.827898593056783 21.50213536290173 92-93 21.418972018382977 28.228649190165246 28.84529581514297 21.50708297630881 94-95 21.270094575013747 28.358687233287363 28.82759442280175 21.543623768897145 96-97 21.413678451481562 28.43580528768248 28.90425948198669 21.246256778849272 98-99 22.38486258991983 30.38700226339609 29.135366057791977 18.092769088892098 100 28.108823264581755 41.31839213670149 30.57278459871675 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2707.0 1 2418.5 2 3056.0 3 4255.0 4 5318.5 5 7468.5 6 9372.5 7 11184.0 8 14074.0 9 15560.0 10 14670.5 11 14105.0 12 15419.5 13 18767.5 14 24975.5 15 31925.5 16 37516.0 17 41947.5 18 42464.5 19 39032.0 20 34939.0 21 32213.5 22 32902.0 23 38158.0 24 47861.5 25 61479.0 26 79983.5 27 100256.5 28 119945.0 29 141393.0 30 161904.5 31 180224.0 32 199312.5 33 219047.0 34 238184.5 35 255541.0 36 272803.5 37 288204.5 38 298837.0 39 306985.0 40 314835.5 41 319325.0 42 320857.0 43 323005.5 44 324778.0 45 323992.0 46 319780.5 47 314450.5 48 306950.0 49 295984.0 50 284094.5 51 268780.5 52 249785.5 53 231042.0 54 211940.0 55 191572.0 56 170586.5 57 150106.0 58 129956.5 59 111235.5 60 93094.0 61 74108.5 62 57087.0 63 43567.0 64 32657.5 65 23962.0 66 17083.0 67 12449.5 68 9099.0 69 6384.5 70 4562.5 71 3232.5 72 2221.0 73 1491.5 74 967.5 75 643.0 76 431.5 77 273.0 78 189.5 79 132.0 80 79.0 81 47.0 82 32.0 83 18.5 84 11.0 85 8.0 86 6.0 87 6.5 88 5.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003276962445742865 3 0.0 4 0.0 5 0.002273810676637906 6 6.687678460699723E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 6.719185161727763E-6 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 3.512425707716147E-4 50-51 0.0014129560388074535 52-53 0.004067855041253976 54-55 0.006123417366218473 56-57 0.007065497987041862 58-59 0.008679105058342287 60-61 0.008309695172936192 62-63 0.0061720993983859765 64-65 0.0036063827210181 66-67 0.001276347515707741 68-69 4.863958276487482E-4 70-71 3.0675916370348077E-4 72-73 5.55656472576678E-4 74-75 0.0 76-77 2.6781142660970987E-4 78-79 2.6274052093647844E-4 80-81 7.727300475306253E-5 82-83 1.739637198662219E-5 84-85 1.409306088510588E-4 86-87 1.1596480307659976E-4 88-89 2.7114626813708683E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 73.0 20-21 236.0 22-23 615.0 24-25 840.0 26-27 2376.0 28-29 6270.0 30-31 19089.0 32-33 24267.0 34-35 32821.0 36-37 50240.0 38-39 58865.0 40-41 59202.0 42-43 67038.0 44-45 78979.0 46-47 80807.0 48-49 76545.0 50-51 68299.0 52-53 64317.0 54-55 66908.0 56-57 69994.0 58-59 71948.0 60-61 70405.0 62-63 69484.0 64-65 71961.0 66-67 75184.0 68-69 76709.0 70-71 75924.0 72-73 72161.0 74-75 72055.0 76-77 74639.0 78-79 75510.0 80-81 76172.0 82-83 72232.0 84-85 71220.0 86-87 72445.0 88-89 75038.0 90-91 75704.0 92-93 74597.0 94-95 84270.0 96-97 220023.0 98-99 1578144.0 100-101 3442830.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.81600075806642 #Duplication Level Percentage of deduplicated Percentage of total 1 90.56733200934094 78.62693564378998 2 6.745677476489755 11.712654818252123 3 1.5966698783121667 4.158494800977927 4 0.5562240216416244 1.931565803379761 5 0.22683012734834315 0.9846242253913032 6 0.10655992457323427 0.5550663895517645 7 0.06934844754062475 0.42143884119803254 8 0.03324079478308522 0.23086662920696455 9 0.022548385259849424 0.17618045686310352 >10 0.07375535183671533 0.9687634230498087 >50 0.0012678210295430136 0.07365523012445611 >100 4.55317746560288E-4 0.07491293507835492 >500 4.5222051057214976E-5 0.031663170796122214 >1k 4.5222046459004566E-5 0.05317763234037686 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3375356921399447E-5 0.0 2 0.0 0.0 0.0 1.3375356921399447E-5 0.0 3 0.0 0.0 0.0 1.3375356921399447E-5 0.0 4 0.0 0.0 0.0 1.3375356921399447E-5 0.0 5 0.0 4.012607076419834E-5 0.0 1.3375356921399447E-5 0.0 6 0.0 4.012607076419834E-5 0.0 2.6750713842798894E-5 0.0 7 0.0 4.012607076419834E-5 0.0 4.012607076419834E-5 1.3375356921399447E-5 8 0.0 4.012607076419834E-5 0.0 6.687678460699724E-5 1.3375356921399447E-5 9 0.0 6.687678460699724E-5 0.0 8.025214152839669E-5 1.3375356921399447E-5 10-11 0.0 8.025214152839669E-5 0.0 8.693981998909641E-5 1.3375356921399447E-5 12-13 0.0 9.362749844979613E-5 0.0 9.362749844979613E-5 1.3375356921399447E-5 14-15 0.0 1.471289261353939E-4 0.0 1.0031517691049585E-4 1.3375356921399447E-5 16-17 0.0 1.6050428305679337E-4 0.0 1.0700285537119558E-4 1.3375356921399447E-5 18-19 0.0 1.6050428305679337E-4 0.0 1.2706589075329476E-4 6.018910614629751E-5 20-21 0.0 2.0063035382099172E-4 0.0 1.3375356921399448E-4 1.0700285537119558E-4 22-23 0.0 2.273810676637906E-4 0.0 1.3375356921399448E-4 1.0700285537119558E-4 24-25 0.0 2.4075642458519007E-4 0.0 1.8056731843889255E-4 1.0700285537119558E-4 26-27 0.0 2.4075642458519007E-4 0.0 2.1400571074239118E-4 1.0700285537119558E-4 28-29 0.0 2.4075642458519007E-4 0.0 5.216389199345784E-4 1.0700285537119558E-4 30-31 0.0 2.875701738100881E-4 0.0 0.0017655471136247272 1.0700285537119558E-4 32-33 0.0 3.076332091921873E-4 0.0 0.00435367867791552 1.0700285537119558E-4 34-35 0.0 3.410716014956859E-4 0.0 0.007831271477479376 1.0700285537119558E-4 36-37 0.0 4.012607076419834E-4 0.0 0.013549236561377642 1.0700285537119558E-4 38-39 0.0 4.213237430240826E-4 0.0 0.028061498821096043 1.0700285537119558E-4 40-41 0.0 4.413867784061818E-4 0.0 0.04472719354515975 1.0700285537119558E-4 42-43 0.0 4.413867784061818E-4 0.0 0.05521347337153692 1.136905338318953E-4 44-45 0.0 4.547621353275812E-4 0.0 0.06747198798999951 1.2037821229259503E-4 46-47 0.0 4.6813749224898065E-4 0.0 0.08086072026832036 1.2037821229259503E-4 48-49 0.0 4.6813749224898065E-4 0.0 0.0943163293312482 1.2037821229259503E-4 50-51 0.0 5.082635630131791E-4 0.0 0.10796588106953633 1.3375356921399448E-4 52-53 0.0 5.350142768559779E-4 0.0 0.14320994655742386 1.3375356921399448E-4 54-55 0.0 5.617649906987768E-4 0.0 0.18605790245512702 1.3375356921399448E-4 56-57 0.0 5.751403476201763E-4 0.0 0.23644287197803873 1.3375356921399448E-4 58-59 0.0 5.885157045415756E-4 0.0 0.27608742989306667 1.3375356921399448E-4 60-61 0.0 5.885157045415756E-4 0.0 0.2906331305450886 1.5381660459609365E-4 62-63 0.0 6.152664183843746E-4 0.0 0.3081481604336612 1.6719196151749309E-4 64-65 0.0 6.28641775305774E-4 0.0 0.3165946983295249 1.7387963997819283E-4 66-67 0.0 6.487048106878732E-4 0.0 0.32336262893175305 1.7387963997819283E-4 68-69 0.0 6.687678460699723E-4 0.0 0.330645510775455 1.8725499689959226E-4 70-71 0.0 6.754555245306721E-4 0.0 0.33733318923615474 2.0731803228169144E-4 72-73 0.0 6.821432029913718E-4 0.0 0.34306452967697443 2.1400571074239115E-4 74-75 0.0 6.821432029913718E-4 0.0 0.34735801924874365 2.273810676637906E-4 76-77 0.0 7.222692737555702E-4 0.0 0.351404064717467 2.273810676637906E-4 78-79 0.0 7.49019987598369E-4 0.0 0.3539453825325329 2.273810676637906E-4 80-81 0.0 7.623953445197685E-4 0.0 0.35478803001858106 2.3406874612449035E-4 82-83 0.0 7.623953445197685E-4 0.0 0.35531635661697636 2.474441030458898E-4 84-85 0.0 7.757707014411679E-4 0.0 0.3555838637554043 2.5413178150658953E-4 86-87 0.0 7.824583799018676E-4 0.0 0.3557176173246183 2.5413178150658953E-4 88 0.0 8.292721291267657E-4 0.0 0.3557443680384611 2.5413178150658953E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12220 0.0 52.95738 1 GTATCAA 23735 0.0 39.04038 1 ATCAACG 27715 0.0 32.892235 3 TCAACGC 28160 0.0 32.446297 4 TATCAAC 28310 0.0 32.364037 2 CAACGCA 28795 0.0 31.701893 5 AACGCAG 29685 0.0 30.90429 6 ACGCAGA 33825 0.0 27.060116 7 CGCAGAG 34290 0.0 26.68103 8 TGGTATC 4935 0.0 25.366901 2 GTGGTAT 5405 0.0 24.31529 1 GCAGAGT 39625 0.0 23.099266 9 TACATGG 33105 0.0 22.613457 2 GTACATG 34065 0.0 22.31803 1 ACATGGG 33470 0.0 22.055168 3 GAGTACT 22145 0.0 20.835264 12-13 CAGAGTA 39090 0.0 19.894056 10-11 CATGGGG 20955 0.0 19.826477 4 GTACTTT 25355 0.0 18.115587 14-15 AGAGTAC 37660 0.0 17.977179 10-11 >>END_MODULE