##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138903_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6690934 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.310714318808106 33.0 32.0 33.0 25.0 34.0 2 30.846821684386665 32.0 31.0 33.0 25.0 33.0 3 30.98376474794102 33.0 31.0 33.0 27.0 33.0 4 32.4723540838992 33.0 33.0 33.0 32.0 34.0 5 32.49874307533148 33.0 33.0 33.0 32.0 34.0 6 36.85130147749178 38.0 37.0 38.0 35.0 38.0 7 36.86359946159983 38.0 38.0 38.0 35.0 38.0 8 37.282582072996085 38.0 38.0 38.0 36.0 38.0 9 37.30454657003043 38.0 38.0 38.0 37.0 38.0 10-11 37.35109194022837 38.0 38.0 38.0 37.0 38.0 12-13 37.377909197729345 38.0 38.0 38.0 37.0 38.0 14-15 37.39503819646106 38.0 38.0 38.0 37.0 38.0 16-17 37.35438221330535 38.0 38.0 38.0 37.0 38.0 18-19 37.33971841599394 38.0 38.0 38.0 37.0 38.0 20-21 37.39757728077774 38.0 38.0 38.0 37.0 38.0 22-23 37.41884535030319 38.0 38.0 38.0 37.0 38.0 24-25 37.419712143755035 38.0 38.0 38.0 37.0 38.0 26-27 37.321371648851056 38.0 38.0 38.0 37.0 38.0 28-29 37.22824405723608 38.0 38.0 38.0 37.0 38.0 30-31 37.31058795313143 38.0 38.0 38.0 37.0 38.0 32-33 37.330220174194594 38.0 38.0 38.0 37.0 38.0 34-35 37.2888760938835 38.0 38.0 38.0 37.0 38.0 36-37 37.29408730037235 38.0 38.0 38.0 37.0 38.0 38-39 37.29090967594057 38.0 38.0 38.0 37.0 38.0 40-41 37.2453128971789 38.0 38.0 38.0 37.0 38.0 42-43 37.23553073899532 38.0 38.0 38.0 37.0 38.0 44-45 37.166456127427224 38.0 38.0 38.0 37.0 38.0 46-47 37.13673129338814 38.0 38.0 38.0 36.5 38.0 48-49 37.11072489480266 38.0 38.0 38.0 36.0 38.0 50-51 37.11047278168316 38.0 38.0 38.0 36.0 38.0 52-53 37.097090552396885 38.0 38.0 38.0 36.0 38.0 54-55 37.04827112921802 38.0 38.0 38.0 36.0 38.0 56-57 37.05165560790764 38.0 38.0 38.0 36.0 38.0 58-59 37.06773504777429 38.0 38.0 38.0 36.0 38.0 60-61 37.081994647375595 38.0 38.0 38.0 36.0 38.0 62-63 37.01337136670108 38.0 38.0 38.0 36.0 38.0 64-65 37.04610794888691 38.0 38.0 38.0 36.0 38.0 66-67 37.070770003177714 38.0 38.0 38.0 36.0 38.0 68-69 37.04374630067304 38.0 38.0 38.0 36.0 38.0 70-71 36.99612257418151 38.0 38.0 38.0 36.0 38.0 72-73 37.0126172408056 38.0 38.0 38.0 36.0 38.0 74-75 37.03674534362575 38.0 38.0 38.0 36.0 38.0 76-77 36.9759247629789 38.0 38.0 38.0 36.0 38.0 78-79 37.00195518158441 38.0 38.0 38.0 36.0 38.0 80-81 36.98327034257319 38.0 38.0 38.0 36.0 38.0 82-83 36.928135498289905 38.0 38.0 38.0 36.0 38.0 84-85 36.9641963961041 38.0 38.0 38.0 36.0 38.0 86-87 36.99060246685998 38.0 38.0 38.0 36.0 38.0 88-89 36.90302586847389 38.0 38.0 38.0 35.5 38.0 90-91 36.865306508510784 38.0 38.0 38.0 35.0 38.0 92-93 36.924809996664735 38.0 38.0 38.0 35.0 38.0 94-95 36.90860509839941 38.0 38.0 38.0 35.0 38.0 96-97 36.85206534634284 38.0 38.0 38.0 35.0 38.0 98-99 36.865111369877454 38.0 38.0 38.0 35.0 38.0 100 35.27633971820453 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 10.0 20 44.0 21 128.0 22 466.0 23 1339.0 24 2971.0 25 6085.0 26 10823.0 27 17738.0 28 27275.0 29 39426.0 30 54156.0 31 71739.0 32 92488.0 33 123407.0 34 181122.0 35 331572.0 36 971396.0 37 4758744.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.31163661157022 21.558828707621387 13.836633271229399 24.29290140957899 2 13.677351280016381 21.874702021990963 41.34529878507173 23.102647912920922 3 16.207139391899545 27.97965127140695 32.38498541459234 23.42822392210116 4 11.549907576348154 19.101281615943257 41.67749227013054 27.671318537578042 5 12.27875297710015 38.20733545519833 36.74716451528288 12.766747052418634 6 27.148050547429765 40.62040047204384 19.914603467633075 12.316945512893325 7 24.02870276641952 33.88006408084505 25.400456708289727 16.690776444445707 8 23.39271318473624 36.77242967872647 22.67563840862875 17.15921872790854 9 25.337673335292205 16.24646125638065 21.910349138102394 36.50551627022475 10-11 22.68408267067049 27.16752997414113 30.804989258599768 19.343398096588608 12-13 24.107127644660668 25.027514843219194 30.428733865854902 20.436623646265232 14-15 21.551490419723166 26.11996322187605 27.890171984957558 24.438374373443228 16-17 20.937966209201882 29.27611451555194 28.303522348299953 21.482396926946222 18-19 21.012059004019466 28.557448033413575 29.931538705956445 20.498954256610514 20-21 21.903544098660273 27.667796302638614 29.671353875027023 20.757305723674087 22-23 21.56942801173693 27.584011960245814 29.611032675060933 21.23552735295632 24-25 21.27071197569445 27.774481071478462 29.631690676646333 21.323116276180755 26-27 21.368596561628916 27.885983976116673 29.473989446986447 21.27143001526796 28-29 21.351239392212705 27.80426964209845 29.570731582549374 21.273759383139467 30-31 21.59751598236966 27.692022961575457 29.517257530256803 21.193203525798083 32-33 21.334983838037086 27.927832904628215 29.485807419979377 21.25137583735532 34-35 21.38909136316212 27.936071286991677 29.495068027594673 21.179769322251534 36-37 21.462610284853344 27.81708389090724 29.499543104663655 21.22076271957576 38-39 21.284207239014584 27.946830493223413 29.56062597249993 21.208336295262068 40-41 21.488944524023328 27.81192215311793 29.442449556607347 21.256683766251392 42-43 21.35857753972583 27.91885302622539 29.306021633867008 21.416547800181775 44-45 21.44566152788524 27.98528414481077 29.184499460517916 21.384554866786083 46-47 21.508804332514202 27.973383524550393 28.991281754292604 21.526530388642804 48-49 21.44550069916861 28.08400162607635 29.00330490226643 21.46719277248861 50-51 21.420167267838075 28.2101429888733 28.82248693912158 21.54720280416705 52-53 21.573846387541593 28.13531581011154 28.706233025429302 21.584604776917573 54-55 21.54749419492751 28.066643979060977 28.782201249845535 21.603660576165982 56-57 21.525958045494033 28.071884006375846 28.82111993276299 21.58103801536713 58-59 21.48328328826853 28.094343596865656 28.80387487443533 21.61849824043048 60-61 21.569678569251952 28.054860764752192 28.829571512734052 21.5458891532618 62-63 21.52284142513615 28.115258060948722 28.78275211362381 21.579148400291317 64-65 21.479995734187217 28.09133901635892 28.77554805063493 21.653117198818936 66-67 21.53487835934012 28.181525004282342 28.63930144864067 21.64429518773687 68-69 21.544197846362486 28.16747048685852 28.619056280938427 21.66927538584057 70-71 21.618404244140553 27.909488092663853 28.659672414736388 21.812435248459206 72-73 21.620760505759332 28.002913132201357 28.553064218915114 21.8232621431242 74-75 21.48516980797633 28.08072925451368 28.576271639638897 21.857829297871096 76-77 21.676228985209892 28.063549175672257 28.42072867119219 21.839493167925657 78-79 21.66932060166448 28.093458578129738 28.376791631721538 21.86042918848425 80-81 21.714950571742893 28.082417053854304 28.246884604179574 21.95574777022323 82-83 21.747167241860563 28.06776963947502 28.339874395751526 21.84518872291289 84-85 21.784359527975283 28.1061031902617 28.314261251535573 21.795276030227452 86-87 21.664259950523967 28.142831626739984 28.34870145848971 21.844206964246336 88-89 21.76829495706282 28.131096456601934 28.272611830787774 21.82799675554747 90-91 21.89035455143426 28.112950119989787 28.261972095527167 21.734723233048786 92-93 21.905360165280648 28.064138109715614 28.236061332474815 21.794440392528923 94-95 21.739439668471118 28.1654163765717 28.284256802446972 21.81088715251021 96-97 21.830564034807058 28.244304845040546 28.387268943440326 21.53786217671207 98-99 22.8792066349897 30.120936406800965 28.636944997046204 18.362911961163135 100 21.727008515050052 31.011755641291476 22.74564191466821 24.515593928990263 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1057.0 1 1130.0 2 1899.0 3 2797.5 4 3543.5 5 4824.5 6 5836.0 7 7077.5 8 8972.0 9 10046.0 10 9629.5 11 9357.0 12 10452.5 13 12753.0 14 16758.5 15 21008.5 16 23907.5 17 25458.0 18 25281.0 19 23752.0 20 22436.5 21 22700.5 22 25577.5 23 31569.5 24 40913.5 25 53656.0 26 69130.0 27 85016.5 28 99396.0 29 114982.5 30 131563.0 31 147966.0 32 165575.0 33 182368.0 34 198883.0 35 214855.0 36 231046.5 37 245378.5 38 254202.0 39 261454.0 40 269782.0 41 275850.5 42 279474.5 43 283623.5 44 285306.5 45 285635.5 46 284034.5 47 280847.5 48 276542.5 49 267561.5 50 257602.0 51 246214.5 52 229984.5 53 212695.0 54 195477.5 55 176632.0 56 158593.5 57 141278.0 58 123249.5 59 104777.5 60 85983.0 61 68474.5 62 53553.5 63 40699.0 64 29866.5 65 21495.0 66 15292.0 67 11151.5 68 8196.0 69 5829.5 70 4081.5 71 2844.0 72 1964.0 73 1262.5 74 806.5 75 491.0 76 294.5 77 164.0 78 106.5 79 72.0 80 44.5 81 29.5 82 24.0 83 20.5 84 14.5 85 9.5 86 5.0 87 3.0 88 1.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.978238613622552E-5 3 0.0 4 8.967357920433828E-5 5 0.004169821433001731 6 4.483678960216915E-4 7 1.6440156187462018E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0011143236205197087 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 7.826072733485205E-6 48-49 6.317308952732315E-5 50-51 4.859912233171896E-4 52-53 2.328302727526359E-4 54-55 2.7496784897989353E-4 56-57 4.3196593565533227E-4 58-59 3.6160191951448037E-4 60-61 4.97512809089161E-5 62-63 4.85186259658971E-4 64-65 1.0124545407911185E-4 66-67 1.2770388499907585E-4 68-69 5.759551119497706E-4 70-71 1.5631529420101522E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 8.635855578886073E-4 90-91 0.0 92-93 9.700022911454118E-6 94-95 6.867115815281648E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 59.0 20-21 496.0 22-23 922.0 24-25 664.0 26-27 1966.0 28-29 5512.0 30-31 12474.0 32-33 16894.0 34-35 22685.0 36-37 35268.0 38-39 43578.0 40-41 42946.0 42-43 46853.0 44-45 56835.0 46-47 57804.0 48-49 56638.0 50-51 50545.0 52-53 44807.0 54-55 47394.0 56-57 49490.0 58-59 52842.0 60-61 54409.0 62-63 51010.0 64-65 52046.0 66-67 55855.0 68-69 58462.0 70-71 59106.0 72-73 53406.0 74-75 51585.0 76-77 53528.0 78-79 56805.0 80-81 58343.0 82-83 54331.0 84-85 51030.0 86-87 52113.0 88-89 55338.0 90-91 58045.0 92-93 57222.0 94-95 63761.0 96-97 197257.0 98-99 437835.0 100-101 4412775.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.04065946661478 #Duplication Level Percentage of deduplicated Percentage of total 1 91.33692512764378 80.41363121890578 2 6.360414424809024 11.199501608823118 3 1.366568111493218 3.6094067322572787 4 0.46402365032365406 1.6341179273040147 5 0.19583629516229092 0.8620778286793359 6 0.09526655638540318 0.5032398269570604 7 0.05862438936491814 0.36129309303604945 8 0.03085906480474889 0.21734819327464758 9 0.021437383540659556 0.16986252457425788 >10 0.0686838623320748 0.8933331083035512 >50 0.0010905363562928884 0.06401829865641545 >100 1.9836070146715733E-4 0.03369288910326879 >500 7.223708250201009E-5 0.03847675012521397 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4945596534056381E-5 2 0.0 0.0 0.0 0.0 1.4945596534056381E-5 3 0.0 0.0 0.0 0.0 1.4945596534056381E-5 4 0.0 2.9891193068112762E-5 0.0 0.0 1.4945596534056381E-5 5 0.0 4.483678960216915E-5 0.0 0.0 1.4945596534056381E-5 6 0.0 4.483678960216915E-5 0.0 1.4945596534056381E-5 1.4945596534056381E-5 7 0.0 4.483678960216915E-5 0.0 1.4945596534056381E-5 1.4945596534056381E-5 8 0.0 4.483678960216915E-5 0.0 1.4945596534056381E-5 1.4945596534056381E-5 9 0.0 5.9782386136225524E-5 0.0 5.9782386136225524E-5 5.9782386136225524E-5 10-11 0.0 5.9782386136225524E-5 0.0 5.9782386136225524E-5 5.9782386136225524E-5 12-13 0.0 5.9782386136225524E-5 0.0 5.9782386136225524E-5 5.9782386136225524E-5 14-15 0.0 1.0461917573839467E-4 0.0 5.9782386136225524E-5 5.9782386136225524E-5 16-17 1.4945596534056381E-5 1.1956477227245105E-4 0.0 7.472798267028192E-5 8.96735792043383E-5 18-19 1.4945596534056381E-5 1.2703757053947925E-4 0.0 9.714637747136648E-5 1.2703757053947925E-4 20-21 1.4945596534056381E-5 1.3451036880650743E-4 0.0 1.0461917573839467E-4 1.494559653405638E-4 22-23 2.2418394801084573E-5 1.419831670735356E-4 0.0 1.419831670735356E-4 1.56928763607592E-4 24-25 2.9891193068112762E-5 1.793471584086766E-4 0.0 1.494559653405638E-4 1.6440156187462018E-4 26-27 2.9891193068112762E-5 2.0923835147678934E-4 0.0 1.793471584086766E-4 1.793471584086766E-4 28-29 2.9891193068112762E-5 2.0923835147678934E-4 0.0 8.369534059071574E-4 1.9429275494273296E-4 30-31 2.9891193068112762E-5 2.391295445449021E-4 0.0 0.002630424989993923 2.0923835147678934E-4 32-33 2.9891193068112762E-5 2.540751410789585E-4 0.0 0.0060305482014917505 2.0923835147678934E-4 34-35 2.9891193068112762E-5 2.9143913241409943E-4 0.0 0.010536645556509749 2.2418394801084572E-4 36-37 2.9891193068112762E-5 3.2880312374924036E-4 0.0 0.018039335016606053 2.2418394801084572E-4 38-39 2.9891193068112762E-5 3.2880312374924036E-4 0.0 0.038656785435336835 2.391295445449021E-4 40-41 2.9891193068112762E-5 4.035311064195223E-4 0.0 0.06182993286139125 2.540751410789585E-4 42-43 2.9891193068112762E-5 4.1100390468655045E-4 0.0 0.07623001512195457 2.615479393459867E-4 44-45 3.736399133514096E-5 4.4836789602169144E-4 0.0 0.09300644723143286 2.6902073761301485E-4 46-47 4.483678960216915E-5 4.782590890898042E-4 0.0 0.11221901157596234 2.8396633414707126E-4 48-49 4.483678960216915E-5 4.782590890898042E-4 0.0 0.13009394503069377 2.989119306811276E-4 50-51 8.220078093731009E-5 5.380414752260297E-4 0.0 0.150038843605392 2.989119306811276E-4 52-53 8.96735792043383E-5 5.529870717600862E-4 0.0 0.19644492084363707 2.989119306811276E-4 54-55 8.96735792043383E-5 5.529870717600862E-4 0.0 0.2480371200791997 3.063847289481558E-4 56-57 8.96735792043383E-5 5.529870717600862E-4 0.0 0.3163235506433033 3.2880312374924036E-4 58-59 9.714637747136648E-5 5.604598700271143E-4 0.0 0.3702173717451106 3.586943168173532E-4 60-61 1.0461917573839467E-4 5.679326682941425E-4 0.0 0.3999815272426839 3.6616711508438135E-4 62-63 1.0461917573839467E-4 5.679326682941425E-4 0.0 0.4234087498098173 4.035311064195223E-4 64-65 1.0461917573839467E-4 6.874974405665935E-4 0.0 0.4349168591410407 4.1100390468655045E-4 66-67 1.494559653405638E-4 7.024430371006499E-4 0.0 0.44325650200704414 4.184767029535787E-4 68-69 1.494559653405638E-4 7.173886336347063E-4 0.0 0.4515961448730476 4.2594950122060686E-4 70-71 1.494559653405638E-4 7.547526249698473E-4 0.0 0.45710359719584737 4.3342229948763503E-4 72-73 1.793471584086766E-4 7.771710197709319E-4 0.0 0.46140045619938863 4.6331349255574784E-4 74-75 1.793471584086766E-4 7.995894145720163E-4 0.0 0.46450914027847234 4.70786290822776E-4 76-77 1.793471584086766E-4 8.220078093731009E-4 0.0 0.46769255234022633 4.782590890898042E-4 78-79 1.793471584086766E-4 8.518990024412137E-4 0.0 0.4695009695208472 4.782590890898042E-4 80-81 1.793471584086766E-4 8.59371800708242E-4 0.0 0.47010626618047646 4.932046856238605E-4 82-83 1.793471584086766E-4 8.668445989752701E-4 0.0 0.4706443076557025 5.08150282157917E-4 84-85 1.793471584086766E-4 8.817901955093265E-4 0.0 0.47084607320891225 5.08150282157917E-4 86-87 1.793471584086766E-4 8.817901955093265E-4 0.0 0.4710254203673209 5.230958786919734E-4 88 1.793471584086766E-4 9.41572581645552E-4 0.0 0.4710254203673209 5.679326682941425E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8045 0.0 50.3285 1 GTATCAA 15535 0.0 38.6692 1 TCAACGC 18190 0.0 32.2745 4 ATCAACG 18570 0.0 31.591091 3 CAACGCA 18640 0.0 31.449568 5 AACGCAG 19125 0.0 30.784262 6 TATCAAC 19770 0.0 29.997284 2 ACGCAGA 22085 0.0 26.561733 7 CGCAGAG 22365 0.0 26.210114 8 GCAGAGT 26470 0.0 22.177652 9 AGAGTAC 23670 0.0 19.898571 10-11 GAGTACT 15115 0.0 19.884926 12-13 GTACATG 18620 0.0 19.339115 1 TACATGG 18285 0.0 19.296757 2 CAGAGTA 25870 0.0 18.88253 10-11 ACATGGG 18645 0.0 18.603813 3 AGTACTT 16975 0.0 17.16572 12-13 GTACTTT 17555 0.0 17.036726 14-15 CATGGGG 12090 0.0 16.621431 4 GTATAAT 4965 0.0 14.350632 1 >>END_MODULE