##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138901_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 85479774 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.24403825634822 33.0 31.0 34.0 30.0 34.0 2 32.28519918641806 34.0 31.0 34.0 30.0 34.0 3 32.385326299529055 34.0 31.0 34.0 30.0 34.0 4 35.97609992511211 37.0 35.0 37.0 35.0 37.0 5 35.91383631875302 37.0 35.0 37.0 35.0 37.0 6 35.984501994588804 37.0 35.0 37.0 35.0 37.0 7 35.924768296649916 37.0 35.0 37.0 35.0 37.0 8 35.927286506396236 37.0 35.0 37.0 35.0 37.0 9 37.61772396590567 39.0 37.0 39.0 35.0 39.0 10-11 37.57375481596383 39.0 37.0 39.0 35.0 39.0 12-13 37.54491079960039 39.0 37.0 39.0 35.0 39.0 14-15 38.88505836480101 40.0 38.0 41.0 35.0 41.0 16-17 38.892086308042884 40.0 38.0 41.0 35.0 41.0 18-19 38.9465521984183 40.0 38.0 41.0 35.0 41.0 20-21 38.96272120991463 40.0 38.0 41.0 35.0 41.0 22-23 38.93128385884461 40.0 38.0 41.0 35.0 41.0 24-25 38.90990264901066 40.0 38.0 41.0 35.0 41.0 26-27 38.824930843672725 40.0 38.0 41.0 34.5 41.0 28-29 38.74371421932902 40.0 38.0 41.0 34.0 41.0 30-31 38.64880695242135 40.0 38.0 41.0 34.0 41.0 32-33 38.56869494826116 40.0 38.0 41.0 34.0 41.0 34-35 38.360465300337 40.0 38.0 41.0 33.5 41.0 36-37 38.384148302590766 40.0 38.0 41.0 34.0 41.0 38-39 38.4283655987077 40.0 38.0 41.0 34.0 41.0 40-41 38.41353236873782 40.0 38.0 41.0 34.0 41.0 42-43 38.337415415844745 40.0 38.0 41.0 33.0 41.0 44-45 38.329437640457726 40.0 38.0 41.0 33.0 41.0 46-47 38.277334291217635 40.0 38.0 41.0 33.0 41.0 48-49 38.22517074913083 40.0 38.0 41.0 33.0 41.0 50-51 38.150539359994696 40.0 37.0 41.0 33.0 41.0 52-53 38.08096133414625 40.0 37.0 41.0 33.0 41.0 54-55 37.96376862424037 40.0 37.0 41.0 33.0 41.0 56-57 37.83160388940297 40.0 36.5 41.0 33.0 41.0 58-59 37.6826404399053 39.5 36.0 41.0 32.5 41.0 60-61 37.513685407938794 39.0 36.0 41.0 32.0 41.0 62-63 37.31353089500193 39.0 35.5 41.0 32.0 41.0 64-65 37.073671547313495 39.0 35.0 41.0 31.5 41.0 66-67 36.707599954129066 38.0 35.0 40.0 31.0 41.0 68-69 36.484032169196745 37.5 35.0 40.0 31.0 41.0 70-71 36.23636021287266 37.0 35.0 39.5 31.0 41.0 72-73 35.844577165015565 36.5 35.0 39.0 31.0 41.0 74-75 35.60299188688674 36.0 34.0 39.0 31.0 40.5 76-77 35.29376906651453 35.5 34.0 38.5 31.0 40.0 78-79 34.961236414675994 35.0 34.0 37.0 30.0 39.0 80-81 34.511920447360794 35.0 34.0 37.0 30.0 39.0 82-83 34.128046921716575 35.0 34.0 36.5 29.5 39.0 84-85 34.05098780891697 35.0 34.0 36.0 29.5 37.0 86-87 34.06800877186818 35.0 34.0 36.0 30.0 37.0 88-89 33.998613232132364 35.0 34.0 35.5 30.0 37.0 90-91 33.69557179919952 35.0 34.0 35.0 30.0 36.0 92-93 33.62374571655171 35.0 34.0 35.0 30.0 36.0 94-95 33.602407885160694 35.0 34.0 35.0 30.0 36.0 96-97 33.60453039629009 35.0 34.0 35.0 30.0 36.0 98-99 33.715438619174975 35.0 34.0 35.0 30.5 35.5 100 33.44274181565214 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 30.0 19 107.0 20 516.0 21 2538.0 22 11420.0 23 39278.0 24 102757.0 25 219471.0 26 395267.0 27 627459.0 28 905343.0 29 1212683.0 30 1547856.0 31 1931278.0 32 2414984.0 33 3062602.0 34 4039455.0 35 5579715.0 36 8579590.0 37 1.6083969E7 38 2.400895E7 39 1.3883687E7 40 830815.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.485036846260265 20.844637469443942 13.756230801452517 24.91409488284328 2 14.234001466452204 22.645153990349904 40.257464654912745 22.86337988828515 3 16.89957673495955 27.946684791188147 31.364049933028603 23.789688540823704 4 12.018140104113986 19.58134447103241 39.998704254880224 28.401811169973378 5 12.331705663661396 38.77556830243315 36.207886024033826 12.684840009871627 6 27.621534188894792 40.11717789520595 19.59139597163652 12.669891944262746 7 24.55232275181261 33.75245470349512 24.68391645490312 17.011306089789148 8 23.895556860035686 36.62981373815986 22.129625658579773 17.345003743224684 9 25.444462452603116 16.471419309087082 21.5754980821545 36.5086201561553 10-11 23.106213266295498 27.183192570094146 30.107225836919145 19.603368326691214 12-13 24.507354958094396 24.955874322602284 29.814189990514762 20.722580728788557 14-15 21.808932952463213 26.045099156788513 27.44341509232939 24.70255279841889 16-17 21.131281732980607 29.11182470080004 27.957157108458215 21.799736457761146 18-19 21.218900274584254 28.274133597966696 29.703159954540826 20.803806172908228 20-21 22.08919987628968 27.443639003010787 29.499368699132965 20.967792421566564 22-23 21.74774403559615 27.35866200146034 29.41063649374823 21.482957469195284 24-25 21.542450342566163 27.539491037917614 29.414601902707066 21.503456716809154 26-27 21.56363690833967 27.674374439983236 29.288915000330114 21.473073651346986 28-29 21.55983956414265 27.610550119472432 29.36888969413472 21.4607206222502 30-31 21.83601303175448 27.48903112011115 29.259698704344945 21.41525714378943 32-33 21.649201730402588 27.666720760605052 29.1937362158173 21.490341293175057 34-35 21.859946892150496 27.710310496947834 29.11393080713684 21.315811803764834 36-37 21.80452650346499 27.598538393313767 29.10809142249467 21.488843680726568 38-39 21.65363706232699 27.711505568857113 29.142865633156894 21.491991735659003 40-41 21.857850717599124 27.59966377983535 28.99767095809439 21.544814544471137 42-43 21.848472047288112 27.686008699869973 28.77603355377226 21.689485699069653 44-45 21.8523761951524 27.812187428171004 28.597330355656926 21.73810602101967 46-47 21.97993671853948 27.814622019935364 28.24829697271457 21.957144288810586 48-49 21.958230688040768 27.906422200253957 28.205980401627222 21.929366710078057 50-51 21.95142528856862 28.03585266821998 28.061538463832715 21.951183579378686 52-53 22.113556251655524 27.93422484598812 27.989488433747926 21.962730468608427 54-55 22.072353291142893 27.870231591441865 28.051157221235112 22.006257896180127 56-57 22.055036295519855 27.954051935868097 28.010132641011133 21.98077912760092 58-59 22.040582451092693 27.988159890889904 28.009258193403515 21.96199946461389 60-61 22.134948272416803 27.954105134069827 27.981198273574986 21.929748319938376 62-63 22.06466575078269 28.072076724333016 27.93246359035796 21.93079393452633 64-65 22.05194369782402 27.981260533911616 27.935400200241272 22.03139556802309 66-67 22.216373705310062 28.05810331162369 27.79125962896798 21.934263354098267 68-69 22.06195579585623 27.998470035990735 27.88873343308612 22.050840735066913 70-71 22.122187460483666 27.755345016424076 27.940805221071262 22.181662302020992 72-73 22.186737099994584 27.846349354794064 27.85146547262341 22.11544807258794 74-75 21.968863812716425 27.959036362357843 27.88845803247143 22.1836417924543 76-77 22.106231616258327 27.91426274657505 27.80846603995986 22.17103959720676 78-79 22.08050499100967 27.9519281807458 27.782662497369508 22.184904330875025 80-81 22.195710759536453 27.96550334974927 27.715723046292318 22.123062844421955 82-83 22.23444514344077 27.933319612764212 27.777793282838424 22.054441960956595 84-85 22.163971908381654 27.88644095657974 27.833511502795456 22.116075632243152 86-87 22.01624667660158 27.92850009141443 27.894055893509957 22.161197338474032 88-89 22.083331568573175 27.92636131616335 27.83046594135701 22.159841173906468 90-91 22.290274855778776 27.95698102723778 27.804975370593667 21.947768746389784 92-93 22.214844753981712 27.9131877053931 27.798991062701905 22.07297647792328 94-95 22.02740842963074 27.98136986682509 27.860146418160703 22.131075285383464 96-97 22.07504161256849 28.133507151402576 27.932949139322698 21.858502096706232 98-99 23.108859890204037 30.045639669198653 28.130545239995087 18.714955200602226 100 22.128376252068882 31.060070831159504 21.969685026331014 24.841867890440604 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 15926.0 1 16037.5 2 29938.5 3 44484.0 4 55375.0 5 91062.5 6 123242.5 7 145340.0 8 157744.5 9 147256.0 10 118673.0 11 89091.5 12 90773.0 13 127359.5 14 222736.5 15 356933.5 16 464330.5 17 521220.5 18 527592.5 19 492825.5 20 436279.0 21 382399.0 22 358616.5 23 385614.5 24 465830.5 25 595993.0 26 766510.0 27 953132.0 28 1135915.5 29 1331726.5 30 1531036.0 31 1726589.0 32 1938032.0 33 2143595.0 34 2342731.5 35 2525786.5 36 2715482.5 37 2887057.0 38 3001287.0 39 3102353.0 40 3217802.5 41 3316986.5 42 3384274.5 43 3456218.5 44 3510486.5 45 3549121.0 46 3555964.0 47 3541159.5 48 3512484.0 49 3423509.0 50 3305975.5 51 3162059.0 52 2983680.5 53 2786224.5 54 2581141.5 55 2375592.0 56 2167784.0 57 1949865.5 58 1724964.0 59 1489342.0 60 1234572.0 61 992194.5 62 775590.0 63 589784.5 64 438368.0 65 321102.0 66 236645.0 67 178589.5 68 135166.5 69 99409.0 70 72954.5 71 53061.5 72 37589.0 73 26207.5 74 17786.0 75 11839.0 76 7789.5 77 4948.0 78 3241.5 79 2161.5 80 1472.5 81 1017.0 82 757.5 83 556.0 84 388.5 85 278.5 86 208.0 87 157.5 88 106.5 89 74.0 90 54.5 91 42.5 92 35.5 93 24.0 94 13.5 95 9.0 96 10.0 97 15.5 98 24.5 99 44.5 100 86.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.3397347774925095E-6 3 0.0 4 0.0 5 0.05977671396276738 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.003821956759034014 12-13 7.405260570763792E-4 14-15 0.002535102631413134 16-17 0.00990351237943142 18-19 0.0 20-21 7.780002130433667E-5 22-23 9.770280692324665E-5 24-25 1.4629337014714316E-5 26-27 2.1014349663301535E-4 28-29 0.03359705879458933 30-31 0.048018497553223294 32-33 0.03719636254028054 34-35 0.006724029222110231 36-37 0.009892063651660885 38-39 8.287394040766042E-4 40-41 1.314657696510207E-5 42-43 5.4117277660652956E-6 44-45 5.198836594894364E-4 46-47 4.2251052685589107E-4 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.004610031914780301 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 1.3491871730805642E-6 74-75 2.7199910577573985E-6 76-77 1.3025350162716444E-5 78-79 0.009263391049526922 80-81 0.0 82-83 0.0 84-85 0.0 86-87 7.46679292822052E-5 88-89 1.0951170911885653E-4 90-91 0.0 92-93 9.65539895967384E-6 94-95 0.0 96-97 0.003270319374003476 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2434.0 20-21 9975.0 22-23 18010.0 24-25 23348.0 26-27 40152.0 28-29 79407.0 30-31 158875.0 32-33 208244.0 34-35 275625.0 36-37 380144.0 38-39 488765.0 40-41 504755.0 42-43 593827.0 44-45 736267.0 46-47 720104.0 48-49 628889.0 50-51 551196.0 52-53 510229.0 54-55 538782.0 56-57 569930.0 58-59 583282.0 60-61 585689.0 62-63 548769.0 64-65 569992.0 66-67 608959.0 68-69 632537.0 70-71 642721.0 72-73 594199.0 74-75 587998.0 76-77 621950.0 78-79 665325.0 80-81 686077.0 82-83 660186.0 84-85 646038.0 86-87 679985.0 88-89 765664.0 90-91 826620.0 92-93 868485.0 94-95 1049497.0 96-97 2861854.0 98-99 5477090.0 100-101 5.7277899E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 74.16025854513981 #Duplication Level Percentage of deduplicated Percentage of total 1 83.42027850798743 61.86469422059918 2 10.634873284343957 15.77369904723496 3 2.904174954315642 6.461230964171028 4 1.1887005984354084 3.526173748509292 5 0.6127931874604412 2.272245060838332 6 0.34120037169264095 1.518210466825443 7 0.23183018289822283 1.203481041160948 8 0.15012061893863993 0.890638713075676 9 0.10513061123063316 0.7016861978885102 >10 0.3983224276883676 4.705081950422704 >50 0.008952823458562931 0.4564016338444484 >100 0.003452141112499784 0.4437863426114951 >500 1.1233793054788184E-4 0.055134958623761686 >1k 4.354883795401268E-5 0.06433145436787094 >5k 1.440366903288256E-5 0.06320419982630444 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.754801083119382E-5 0.0 0.0 0.0 3 0.0 1.754801083119382E-5 0.0 2.3397347774925095E-6 0.0 4 0.0 4.211522599486517E-5 0.0 4.679469554985019E-6 0.0 5 1.1698673887462547E-6 4.445496077235768E-5 0.0 4.679469554985019E-6 0.0 6 1.1698673887462547E-6 4.445496077235768E-5 0.0 7.019204332477529E-6 1.1698673887462547E-6 7 1.1698673887462547E-6 4.445496077235768E-5 0.0 1.6378143442447568E-5 1.1698673887462547E-6 8 1.1698673887462547E-6 4.9134430327342696E-5 0.0 1.9887745608686332E-5 4.679469554985019E-6 9 1.1698673887462547E-6 9.943872804343166E-5 0.0 5.7323502048566484E-5 1.2868541276208802E-5 10-11 1.1698673887462548E-5 1.0002366173780479E-4 0.0 7.136191071352155E-5 1.2868541276208802E-5 12-13 1.2868541276208802E-5 1.0060859543217791E-4 0.0 7.604138026850657E-5 1.2868541276208802E-5 14-15 1.4038408664955056E-5 1.497430257595206E-4 0.0 9.124965632220788E-5 2.3982281469298222E-5 16-17 1.6963077136820694E-5 1.5500742900887874E-4 0.0 1.0996753454214794E-4 3.685082274550702E-5 18-19 1.9302811914313206E-5 1.7138557245132633E-4 0.0 1.1874153995774486E-4 4.211522599486517E-5 20-21 2.1057612997432584E-5 1.8717878219940077E-4 0.0 1.497430257595206E-4 4.2700159689238295E-5 22-23 2.3397347774925096E-5 2.216898701674153E-4 0.0 1.7431024092319196E-4 4.562482816110394E-5 24-25 3.2171353190522E-5 2.579557592185492E-4 0.0 2.1467066583493775E-4 5.3228966187954593E-5 26-27 3.9775491217372664E-5 2.760887037441161E-4 0.0 2.626352287735342E-4 5.790843574293961E-5 28-29 4.0945358606118916E-5 2.784284385216086E-4 0.0 4.2583172950363675E-4 5.8493369437312736E-5 30-31 4.737962924422332E-5 3.205436645164738E-4 0.0 8.896841491415268E-4 6.083310421480525E-5 32-33 4.9134430327342696E-5 3.228833992939663E-4 0.0 0.0018337671318597543 6.902217593602903E-5 34-35 5.55687009654471E-5 3.702630285381896E-4 0.0 0.00313290486706247 7.721124765725281E-5 36-37 5.9663236826058995E-5 4.1939745886553233E-4 0.0 0.005088338207351835 7.721124765725281E-5 38-39 5.9663236826058995E-5 4.480592098898156E-4 0.0 0.008276226841685379 8.072084982349158E-5 40-41 6.20029716035515E-5 4.8257029785783007E-4 0.0 0.012019217551979022 8.306058460098408E-5 42-43 6.4342706381044E-5 5.030429771608895E-4 0.0 0.015476175685724205 8.364551829535721E-5 44-45 6.668244115853652E-5 5.586116781263366E-4 0.0 0.01941804385210471 8.481538568410346E-5 46-47 6.902217593602903E-5 5.942926334830974E-4 0.0 0.02401211308771125 9.066472262783475E-5 48-49 6.902217593602903E-5 6.013118378155749E-4 0.0 0.028698016913334373 9.943872804343166E-5 50-51 6.902217593602903E-5 6.791080191672009E-4 0.0 0.03348277453330656 9.943872804343166E-5 52-53 7.25317781022678E-5 6.849573561109321E-4 0.0 0.03808971231018931 1.1230726931964045E-4 54-55 7.25317781022678E-5 6.878820245827977E-4 0.0 0.04251883024398263 1.327799486226999E-4 56-57 7.25317781022678E-5 6.949012289152753E-4 0.0 0.04698889353638207 1.3862928556643118E-4 58-59 7.25317781022678E-5 6.98410831081514E-4 0.0 0.051603435451291674 1.4272382142704307E-4 60-61 7.25317781022678E-5 7.106944386633498E-4 0.0 0.05643908230267432 1.497430257595206E-4 62-63 7.370164549101405E-5 7.270725821057973E-4 0.0 0.06096880883189981 1.5910196486949065E-4 64-65 7.428657918538718E-5 8.107181004011545E-4 0.0 0.06533475392670084 1.626115670357294E-4 66-67 7.604138026850656E-5 8.230017079829902E-4 0.0 0.0696778866074213 1.6787597028508757E-4 68-69 7.779618135162595E-5 8.469839894522885E-4 0.0 0.07399060273603437 1.6963077136820695E-4 70-71 7.838111504599907E-5 8.616073318116166E-4 0.0 0.07789620501336375 1.7548010831193822E-4 72-73 7.838111504599907E-5 8.651169339778553E-4 0.0 0.08096359730665642 1.8951851697689327E-4 74-75 7.838111504599907E-5 8.902690828358999E-4 0.0 0.08341329961869108 1.8951851697689327E-4 76-77 7.955098243474533E-5 9.534419218281976E-4 0.0 0.08575946866682169 1.9185825175438578E-4 78-79 8.189071721223783E-5 9.856132750187198E-4 0.0 0.08728146613958057 1.9419798653187828E-4 80-81 8.189071721223783E-5 9.879530097962122E-4 0.0 0.0877576021668003 2.053117267249677E-4 82-83 8.247565090661096E-5 9.908776782680778E-4 0.0 0.08818167909522082 2.2461453863928093E-4 84-85 8.306058460098408E-5 9.955571478230628E-4 0.0 0.08833785639161845 2.2519947233365405E-4 86-87 8.306058460098408E-5 0.0010131051586542567 0.0 0.08838640588825142 2.2695427341677343E-4 88 8.306058460098408E-5 0.0010692587933140768 0.0 0.08838816068933453 2.2812414080551968E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 112295 0.0 51.494007 1 GTATCAA 207940 0.0 37.847313 1 TCAACGC 253765 0.0 30.36729 4 ATCAACG 255060 0.0 30.199625 3 CAACGCA 259290 0.0 29.704674 5 TATCAAC 268410 0.0 28.917034 2 AACGCAG 268005 0.0 28.788918 6 ACGCAGA 305920 0.0 25.192808 7 CGCAGAG 311655 0.0 24.733353 8 GCAGAGT 367390 0.0 20.94605 9 GTACATG 245490 0.0 19.537224 1 TACATGG 240565 0.0 19.388506 2 AGAGTAC 330080 0.0 19.321737 10-11 GAGTACT 225755 0.0 19.189217 12-13 ACATGGG 241560 0.0 18.788902 3 CAGAGTA 357640 0.0 18.5779 10-11 AGTACTT 245345 0.0 17.280369 12-13 GTACTTT 256300 0.0 16.835924 14-15 CATGGGG 165950 0.0 16.40814 4 ACTTTTT 300050 0.0 14.580943 16-17 >>END_MODULE