##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138899_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 83371892 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.2467602270559 33.0 31.0 34.0 30.0 34.0 2 32.286660389091324 34.0 31.0 34.0 30.0 34.0 3 32.38854998036988 34.0 31.0 34.0 30.0 34.0 4 35.97709070822094 37.0 35.0 37.0 35.0 37.0 5 35.913368644674634 37.0 35.0 37.0 35.0 37.0 6 35.98421616724255 37.0 35.0 37.0 35.0 37.0 7 35.922626345099616 37.0 35.0 37.0 35.0 37.0 8 35.925157222052725 37.0 35.0 37.0 35.0 37.0 9 37.616195096064274 39.0 37.0 39.0 35.0 39.0 10-11 37.570085785026926 39.0 37.0 39.0 35.0 39.0 12-13 37.54091314732308 39.0 37.0 39.0 35.0 39.0 14-15 38.88115540786816 40.0 38.0 41.0 35.0 41.0 16-17 38.88758199226185 40.0 38.0 41.0 35.0 41.0 18-19 38.94197991812396 40.0 38.0 41.0 35.0 41.0 20-21 38.959302337664965 40.0 38.0 41.0 35.0 41.0 22-23 38.92769204832048 40.0 38.0 41.0 35.0 41.0 24-25 38.90561536599334 40.0 38.0 41.0 35.0 41.0 26-27 38.82008655568377 40.0 38.0 41.0 34.5 41.0 28-29 38.7379354759043 40.0 38.0 41.0 34.0 41.0 30-31 38.643860655518424 40.0 38.0 41.0 34.0 41.0 32-33 38.56368043995103 40.0 38.0 41.0 34.0 41.0 34-35 38.3556569891318 40.0 38.0 41.0 33.5 41.0 36-37 38.379153479962 40.0 38.0 41.0 34.0 41.0 38-39 38.42387438206093 40.0 38.0 41.0 34.0 41.0 40-41 38.40836219731272 40.0 38.0 41.0 34.0 41.0 42-43 38.33172862122106 40.0 38.0 41.0 33.0 41.0 44-45 38.322833638999896 40.0 38.0 41.0 33.0 41.0 46-47 38.27126113521442 40.0 38.0 41.0 33.0 41.0 48-49 38.21978911115967 40.0 38.0 41.0 33.0 41.0 50-51 38.1431236347955 40.0 37.0 41.0 33.0 41.0 52-53 38.07063891767602 40.0 37.0 41.0 33.0 41.0 54-55 37.95153527513456 40.0 37.0 41.0 33.0 41.0 56-57 37.81950842947044 40.0 36.5 41.0 33.0 41.0 58-59 37.669904483240636 39.5 36.0 41.0 32.5 41.0 60-61 37.50000057967004 39.0 36.0 41.0 32.0 41.0 62-63 37.30016837643184 39.0 35.0 41.0 32.0 41.0 64-65 37.05980788161716 39.0 35.0 41.0 31.5 41.0 66-67 36.694503131670885 38.0 35.0 40.0 31.0 41.0 68-69 36.4714538016955 37.5 35.0 40.0 31.0 41.0 70-71 36.22387806383197 37.0 35.0 39.5 31.0 41.0 72-73 35.831805770540655 36.5 35.0 39.0 31.0 41.0 74-75 35.58841499352587 36.0 34.0 39.0 31.0 40.5 76-77 35.279417621800015 35.5 34.0 38.5 31.0 40.0 78-79 34.945970421433685 35.0 34.0 37.0 30.0 39.0 80-81 34.498235886647734 35.0 34.0 37.0 30.0 39.0 82-83 34.115437071681356 35.0 34.0 36.5 29.5 38.5 84-85 34.03957019036948 35.0 34.0 36.0 29.5 37.0 86-87 34.05613842192792 35.0 34.0 36.0 30.0 37.0 88-89 33.98790984120794 35.0 34.0 35.5 30.0 37.0 90-91 33.68767618362496 35.0 34.0 35.0 30.0 36.0 92-93 33.616522278677145 35.0 34.0 35.0 30.0 36.0 94-95 33.59665875842038 35.0 34.0 35.0 30.0 36.0 96-97 33.60045648888288 35.0 34.0 35.0 30.0 36.0 98-99 33.712320457940976 35.0 34.0 35.0 30.5 35.0 100 33.43634362127031 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 23.0 19 105.0 20 484.0 21 2647.0 22 11613.0 23 39610.0 24 102859.0 25 217846.0 26 392513.0 27 620454.0 28 888541.0 29 1186597.0 30 1515605.0 31 1891849.0 32 2362065.0 33 2988938.0 34 3947970.0 35 5438923.0 36 8396775.0 37 1.5691827E7 38 2.3425232E7 39 1.3483132E7 40 766280.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.49789346270323 20.782259565370065 13.703030752858531 25.016816219068172 2 14.244534596863891 22.54217644479029 40.26293297985849 22.95035597848733 3 16.944676030621928 27.834191408298615 31.3198805659826 23.90125199509686 4 12.081809298510342 19.505020948786914 39.775594873149814 28.63757487955293 5 12.415327858809434 38.72065599329693 36.083962729237804 12.780053418655834 6 27.86015099669323 39.850289111826804 19.542276910304494 12.747282981175479 7 24.71590425223887 33.70959123729614 24.55701257205486 17.017491938410128 8 24.052660337851034 36.51130167466992 22.02927936432101 17.40675862315803 9 25.650161567642005 16.32799816993478 21.439680174224666 36.58216008819855 10-11 23.26346475818573 27.04830503809265 29.98212571372833 19.706104489993294 12-13 24.599204001656254 24.85984711833436 29.708576259217516 20.832372620791865 14-15 21.87982646560286 25.913179496727313 27.35686493689306 24.850129100776762 16-17 21.226873850635375 28.985492208382276 27.885971357456736 21.901662583525617 18-19 21.306421833392005 28.168217053296573 29.612054383988312 20.913306729323114 20-21 22.195584903866322 27.33161472370595 29.400450003442284 21.072350368985443 22-23 21.891299778967525 27.255028917270423 29.279368312945508 21.574302990816545 24-25 21.64961067386001 27.444707168424802 29.28071920639625 21.62496295131893 26-27 21.647621848328047 27.557041157590522 29.204533247775384 21.59080374630605 28-29 21.63274932436443 27.55153621039029 29.23840486327856 21.577309601966725 30-31 21.920866234942476 27.386356583818166 29.128250304655882 21.564526876583475 32-33 21.73864885323135 27.558102253982774 29.08506587203677 21.6181830207491 34-35 21.975687283037356 27.612378532144277 28.983029337006105 21.428904847812262 36-37 21.86990807232121 27.53032188879413 28.982914533463887 21.61685550542077 38-39 21.748488768564215 27.613493170409203 28.9987197475525 21.639298313474086 40-41 21.951280169933646 27.522949801519157 28.84943865744638 21.67633137110082 42-43 21.935522078981823 27.6060547710241 28.635788488521698 21.822634661472378 44-45 21.953149071907486 27.7301629703271 28.433981875312114 21.8827060824533 46-47 22.062247892921118 27.732754803901955 28.116515041010103 22.088482262166824 48-49 22.053461648025834 27.85746145275061 28.04115218818673 22.047924711036828 50-51 22.04750912559753 27.96576006593669 27.90518097659807 22.081549831867715 52-53 22.195547194948023 27.870096175673126 27.839785738372374 22.094570891006477 54-55 22.147014025417633 27.793509891222385 27.9300911421909 22.129384941169086 56-57 22.161998849689226 27.873105452834885 27.856889285249352 22.108006412226537 58-59 22.147792756506764 27.915748897287052 27.862010572921143 22.074447773285044 60-61 22.23844117966123 27.861880142571678 27.860114544963338 22.039564132803754 62-63 22.156865954780496 27.968147943703002 27.805043089679334 22.069943011837168 64-65 22.1323517638822 27.905253758562587 27.802530422189896 22.159864055365315 66-67 22.3145497121376 27.95978628256262 27.66852098432697 22.057143020972802 68-69 22.155317944775383 27.915612944634066 27.754362439550317 22.17470667104023 70-71 22.19092672579267 27.694461282246596 27.812017067718052 22.30259492424268 72-73 22.29072110139223 27.773546753010127 27.721830983693717 22.213901161903927 74-75 22.067861741434083 27.864685573753356 27.75095295920146 22.316499725611102 76-77 22.185468630132195 27.815607049811153 27.68016298414996 22.318761335906686 78-79 22.19534190966063 27.86712569805593 27.646969788530377 22.29056260375306 80-81 22.277282218516646 27.894888153569763 27.599050390926756 22.228779236986835 82-83 22.321992737768532 27.839823022954562 27.65123321731923 22.186951021957675 84-85 22.228324073775227 27.820324673132003 27.703468821200033 22.24788243189274 86-87 22.119134222495195 27.83123119891003 27.743381172313736 22.30625340628104 88-89 22.179809269960256 27.823563510401133 27.685687738696345 22.310939480942263 90-91 22.376378796605163 27.857026711251315 27.665657848530227 22.100936643613288 92-93 22.2883673020676 27.83050492891956 27.680444534113935 22.200683234898904 94-95 22.135843832126394 27.891820589848088 27.727657481973317 22.2446780960522 96-97 22.164019357961653 28.054792224069423 27.798890590074716 21.982297827894207 98-99 23.17864816559458 29.948431250481367 28.033522464727206 18.839398119196844 100 22.195019317212594 30.988757206563005 21.80990573568198 25.00631774054242 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 16635.0 1 16173.5 2 28146.5 3 41403.0 4 52949.5 5 89495.0 6 120240.5 7 136880.0 8 141697.0 9 128173.0 10 105482.5 11 82154.5 12 85916.5 13 122836.0 14 216544.5 15 349728.5 16 458158.0 17 517696.5 18 525954.5 19 490348.5 20 429192.0 21 367183.0 22 333913.0 23 351265.5 24 419967.0 25 535967.0 26 695214.5 27 875582.0 28 1056315.5 29 1251885.5 30 1451144.0 31 1647511.5 32 1850857.0 33 2045079.5 34 2240953.0 35 2424580.0 36 2611736.0 37 2782943.0 38 2906249.5 39 3019399.0 40 3149558.5 41 3263622.0 42 3338222.0 43 3408379.5 44 3459773.0 45 3499488.0 46 3522487.0 47 3516471.5 48 3481989.0 49 3394564.0 50 3283850.0 51 3142860.5 52 2963057.5 53 2763338.5 54 2546774.5 55 2332118.5 56 2124027.5 57 1909561.0 58 1690265.0 59 1463912.5 60 1221955.5 61 988346.5 62 779390.0 63 600714.5 64 452511.5 65 338389.5 66 253689.0 67 192882.5 68 147131.5 69 108720.0 70 79715.5 71 58511.0 72 42617.5 73 30775.0 74 21757.0 75 14835.5 76 9746.5 77 6116.5 78 3998.0 79 2688.0 80 1837.5 81 1233.0 82 891.5 83 646.5 84 458.5 85 332.5 86 250.5 87 197.0 88 150.0 89 108.5 90 76.5 91 60.0 92 48.5 93 28.0 94 14.0 95 13.0 96 14.0 97 17.5 98 24.5 99 47.5 100 89.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06005021452553818 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0038963971214663086 12-13 7.352597923530391E-4 14-15 0.002564413435645673 16-17 0.009800065470506535 18-19 0.0 20-21 8.516492346363272E-5 22-23 8.157877630239963E-5 24-25 1.4399485304797265E-5 26-27 2.4067016738730176E-4 28-29 0.033314125540536324 30-31 0.04772681939882209 32-33 0.03721159455153277 34-35 0.006726113498210726 36-37 0.009931479341968088 38-39 8.503287535540999E-4 40-41 1.778595271955282E-5 42-43 8.024717760336829E-6 44-45 5.363240054020645E-4 46-47 4.2329527014952213E-4 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.004685033634787696 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 6.933895870135564E-7 74-75 1.3979106547771569E-6 76-77 1.0570060559964038E-5 78-79 0.009386393727056864 80-81 0.0 82-83 0.0 84-85 0.0 86-87 8.045273306717601E-5 88-89 1.0513132109897036E-4 90-91 0.0 92-93 1.9853395805759385E-5 94-95 0.0 96-97 0.0032481341000171102 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2456.0 20-21 10160.0 22-23 18271.0 24-25 23790.0 26-27 39910.0 28-29 80545.0 30-31 165236.0 32-33 213707.0 34-35 280075.0 36-37 388546.0 38-39 499269.0 40-41 511593.0 42-43 598303.0 44-45 739212.0 46-47 716488.0 48-49 621570.0 50-51 543549.0 52-53 500571.0 54-55 528931.0 56-57 559039.0 58-59 572572.0 60-61 574115.0 62-63 537922.0 64-65 555498.0 66-67 591839.0 68-69 618210.0 70-71 625147.0 72-73 578819.0 74-75 572895.0 76-77 608457.0 78-79 647909.0 80-81 668433.0 82-83 642858.0 84-85 632281.0 86-87 664617.0 88-89 745045.0 90-91 804266.0 92-93 845637.0 94-95 1023849.0 96-97 2802685.0 98-99 5356895.0 100-101 5.5660722E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 73.8853624124298 #Duplication Level Percentage of deduplicated Percentage of total 1 83.1360778501978 61.425392415098415 2 10.730713344354262 15.856852887830225 3 2.982106411527023 6.6100203890431395 4 1.2171196484376985 3.5970930529643397 5 0.6525979824103109 2.4108719220003154 6 0.38005470933802366 1.6848287961594326 7 0.23422983254083274 1.211430924555752 8 0.14858867981598078 0.8782822766870587 9 0.1091066267573049 0.7255244393605063 >10 0.39623365149140877 4.530749671403825 >50 0.009218409036539957 0.46256650523157145 >100 0.003777005207748663 0.47224505596443783 >500 1.3555865493625888E-4 0.06015236104660852 >1k 3.5281567366310295E-5 0.049598196295783895 >5k 5.008662637495296E-6 0.024391106358538236 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1994450119951697E-6 1.1994450119951697E-6 2 1.1994450119951697E-6 2.8786680287884075E-5 0.0 1.1994450119951697E-6 2.3988900239903394E-6 3 1.1994450119951697E-6 2.8786680287884075E-5 0.0 1.0795005107956529E-5 2.3988900239903394E-6 4 1.1994450119951697E-6 7.91633707916812E-5 0.0 1.9191120191922715E-5 2.3988900239903394E-6 5 4.797780047980679E-6 8.036281580367638E-5 0.0 2.1590010215913058E-5 2.3988900239903394E-6 6 5.997225059975849E-6 8.156226081567154E-5 0.0 2.1590010215913058E-5 5.997225059975849E-6 7 5.997225059975849E-6 8.276170582766672E-5 0.0 2.3988900239903397E-5 7.196670071971019E-6 8 7.196670071971019E-6 9.595560095961359E-5 0.0 3.838224038384543E-5 7.196670071971019E-6 9 8.396115083966188E-6 1.703211917033141E-4 0.0 6.3570585635744E-5 8.396115083966188E-6 10-11 2.1590010215913058E-5 1.703211917033141E-4 0.0 7.316614573170535E-5 8.995837589963773E-6 12-13 2.5188345251898566E-5 1.703211917033141E-4 0.0 8.935865339364016E-5 1.0195282601958944E-5 14-15 2.9986125299879244E-5 2.3928927989303638E-4 0.0 1.1454699864553872E-4 1.6792230167932376E-5 16-17 3.838224038384543E-5 2.4528650495301223E-4 0.0 1.3373811883746144E-4 2.099028770991547E-5 18-19 4.37797429378237E-5 2.6627679266292767E-4 0.0 1.5352896153538175E-4 3.058584780587683E-5 20-21 4.617863296181404E-5 2.9866180798679724E-4 0.0 1.8111619681127064E-4 3.598335035985509E-5 22-23 4.7977800479806793E-5 3.610329486105461E-4 0.0 2.063045420631692E-4 3.778251787784785E-5 24-25 6.357058563574399E-5 4.1920603169231184E-4 0.0 2.3149288731506777E-4 4.198057541983094E-5 26-27 7.496531324969811E-5 4.4739298947419834E-4 0.0 2.8007041030087216E-4 4.3180020431826116E-5 28-29 7.736420327368845E-5 4.479927119801959E-4 0.0 4.306007593062659E-4 4.4979187949818866E-5 30-31 7.91633707916812E-5 5.037669050379713E-4 0.0 0.0010003371400039715 4.5578910455816455E-5 32-33 8.216198332166913E-5 5.091644075919497E-4 0.0 0.002188987146891185 4.7977800479806793E-5 34-35 9.355671093562323E-5 5.859288883596405E-4 0.0 0.0037506645525088957 4.917724549180196E-5 36-37 1.0435171604357977E-4 6.584953115853483E-4 0.0 0.00617354347673914 5.037669050379713E-5 38-39 1.0555116105557494E-4 6.938789394392057E-4 0.0 0.010180289539309004 5.277558052778747E-5 40-41 1.151467211515363E-4 7.7724036777287E-4 0.0 0.014789156997900444 5.517447055177781E-5 42-43 1.151467211515363E-4 8.024287130247686E-4 0.0 0.019088567643397128 5.637391556377298E-5 44-45 1.2054422370551457E-4 8.845906963464377E-4 0.0 0.023825775718272053 5.757336057576815E-5 46-47 1.265414487654904E-4 9.439632244401987E-4 0.0 0.02905535597057099 5.817308308176574E-5 48-49 1.2894033878948076E-4 9.499604495001745E-4 0.0 0.03438748877139552 6.477003064773917E-5 50-51 1.2954006129547833E-4 0.0010741030082416746 0.0 0.040029078385314804 6.477003064773917E-5 52-53 1.337381188374614E-4 0.001079500510795653 0.0 0.0453690075787173 6.836836568372467E-5 54-55 1.355372863554542E-4 0.0010902955159036094 0.0 0.05046664887969677 7.436559074370052E-5 56-57 1.355372863554542E-4 0.0011172830286735008 0.0 0.055872547548759 8.156226081567154E-5 58-59 1.355372863554542E-4 0.0011232802537334764 0.0 0.06162388638127584 8.396115083966188E-5 60-61 1.3733645387344694E-4 0.0011394727613954112 0.0 0.06733384436087884 8.636004086365223E-5 62-63 1.379361763794445E-4 0.0011628619391293171 0.0 0.07273734413991709 9.595560095961359E-5 64-65 1.391356213914397E-4 0.0012840058853408292 0.0 0.07788116407385837 9.715504597160875E-5 66-67 1.4033506640343487E-4 0.001303197005532752 0.0 0.0831137429386873 9.775476847760634E-5 68-69 1.4393340143942037E-4 0.001352374251024554 0.0 0.08827435510279652 1.0015365850159668E-4 70-71 1.4393340143942037E-4 0.0013853589888544213 0.0 0.09260255242858109 1.0255254852558702E-4 72-73 1.4393340143942037E-4 0.001398552883986368 0.0 0.09599398319999743 1.0914949609156044E-4 74-75 1.4393340143942037E-4 0.001444731516948182 0.0 0.09876829951274227 1.1034894110355562E-4 76-77 1.475317364754059E-4 0.0015268935002698512 0.0 0.10139628353402368 1.1214810862154837E-4 78-79 1.4993062649939622E-4 0.0015694737981956797 0.0 0.1030797046083589 1.151467211515363E-4 80-81 1.4993062649939622E-4 0.00157187268821967 0.0 0.10361225819368475 1.2234339122350733E-4 82-83 1.5053034900539382E-4 0.0015754710232556556 0.0 0.10404105978547303 1.2954006129547833E-4 84-85 1.5232951652338657E-4 0.0015868657508696096 0.0 0.1042227757047903 1.307395063074735E-4 86-87 1.5232951652338657E-4 0.0016180513211814839 0.0 0.10426415655770413 1.349375638494566E-4 88 1.5232951652338657E-4 0.001737995822381001 0.0 0.1042701537827641 1.379361763794445E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 112130 0.0 50.359364 1 GTATCAA 203510 0.0 37.587494 1 TCAACGC 248765 0.0 30.060932 4 ATCAACG 250955 0.0 29.79689 3 CAACGCA 254425 0.0 29.394411 5 TATCAAC 262710 0.0 28.752918 2 AACGCAG 262000 0.0 28.593777 6 ACGCAGA 300865 0.0 24.86731 7 CGCAGAG 305620 0.0 24.48041 8 GCAGAGT 360240 0.0 20.681646 9 GTACATG 249915 0.0 20.223873 1 TACATGG 248830 0.0 19.834066 2 GAGTACT 212915 0.0 19.127886 12-13 ACATGGG 251365 0.0 19.075459 3 AGAGTAC 324250 0.0 19.025925 10-11 CAGAGTA 352955 0.0 18.275146 10-11 AGTACTT 233680 0.0 17.002934 12-13 CATGGGG 168940 0.0 16.937363 4 GTACTTT 243405 0.0 16.698124 14-15 ACTTTTT 284905 0.0 14.506776 16-17 >>END_MODULE