##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138898_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 42274840 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.610407514256707 31.0 31.0 34.0 28.0 34.0 2 31.651467373974686 33.0 31.0 34.0 28.0 34.0 3 31.74584187663395 33.0 31.0 34.0 28.0 34.0 4 35.26645676246202 37.0 35.0 37.0 32.0 37.0 5 35.09333125802487 37.0 35.0 37.0 32.0 37.0 6 35.139325731333344 37.0 35.0 37.0 32.0 37.0 7 35.018342115546744 37.0 35.0 37.0 32.0 37.0 8 35.041818419655755 37.0 35.0 37.0 32.0 37.0 9 36.5623161672522 39.0 37.0 39.0 32.0 39.0 10-11 36.51282908462811 39.0 37.0 39.0 32.0 39.0 12-13 36.47942821309318 39.0 37.0 39.0 32.0 39.0 14-15 37.67408790902579 40.0 37.0 41.0 32.0 41.0 16-17 37.697397920370605 40.0 37.0 41.0 32.0 41.0 18-19 37.75639349551648 40.0 37.0 41.0 32.0 41.0 20-21 37.78487450877045 40.0 37.0 41.0 32.0 41.0 22-23 37.747551505139484 40.0 37.0 41.0 32.0 41.0 24-25 37.740011960263956 40.0 37.0 41.0 32.0 41.0 26-27 37.671327560430186 40.0 37.0 41.0 31.0 41.0 28-29 37.617979732554716 40.0 37.0 41.0 31.0 41.0 30-31 37.52423896086241 40.0 37.0 41.0 31.0 41.0 32-33 37.44765323941715 40.0 36.0 41.0 31.0 41.0 34-35 37.35823900898382 40.0 36.0 41.0 30.5 41.0 36-37 37.32577897899128 40.0 36.0 41.0 30.0 41.0 38-39 37.26802861180481 40.0 36.0 41.0 30.0 41.0 40-41 37.25199361387961 40.0 36.0 41.0 30.0 41.0 42-43 37.21820040831008 40.0 36.0 41.0 30.0 41.0 44-45 37.14719330357643 40.0 36.0 41.0 30.0 41.0 46-47 37.07411634760898 40.0 36.0 41.0 30.0 41.0 48-49 37.01798279288771 39.0 35.5 41.0 30.0 41.0 50-51 36.94586794783006 39.0 35.0 41.0 30.0 41.0 52-53 37.164822550297714 39.0 36.0 41.0 30.0 41.0 54-55 37.15836302234577 39.0 35.5 41.0 30.0 41.0 56-57 37.07918080678661 39.0 35.0 41.0 30.0 41.0 58-59 36.94744385353652 39.0 35.0 41.0 30.0 41.0 60-61 36.82690554569007 39.0 35.0 41.0 30.0 41.0 62-63 36.67131385800033 39.0 35.0 41.0 30.0 41.0 64-65 36.475986145563354 38.0 35.0 40.5 30.0 41.0 66-67 36.25201720299116 38.0 34.5 40.0 30.0 41.0 68-69 35.99986776015143 37.0 34.0 40.0 29.0 41.0 70-71 35.75177930068311 37.0 34.0 39.5 29.0 41.0 72-73 35.47574447377883 36.0 34.0 39.0 29.0 41.0 74-75 35.206955191258615 36.0 34.0 39.0 29.0 41.0 76-77 34.90838576594983 35.5 34.0 38.5 29.0 40.0 78-79 34.62998201386234 35.0 34.0 37.0 29.0 39.0 80-81 34.36493629003283 35.0 34.0 37.0 29.0 39.0 82-83 34.10052824999412 35.0 33.0 36.5 29.0 39.0 84-85 33.88338472597394 35.0 33.0 36.0 29.0 37.0 86-87 33.6570864494292 35.0 33.0 36.0 29.0 37.0 88-89 33.510687162409184 35.0 33.0 35.0 29.0 37.0 90-91 33.4076403817096 35.0 33.0 35.0 29.0 36.0 92-93 33.33313474649971 35.0 33.0 35.0 29.0 36.0 94-95 33.38464458712092 35.0 33.0 35.0 29.0 36.0 96-97 33.56243577742437 35.0 33.5 35.0 30.0 36.0 98-99 33.656705254984786 35.0 34.0 35.0 30.0 36.0 100 32.86396636285536 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 11.0 14 14.0 15 40.0 16 133.0 17 559.0 18 4351.0 19 22091.0 20 68752.0 21 151502.0 22 251264.0 23 344452.0 24 428684.0 25 507783.0 26 579957.0 27 650467.0 28 733067.0 29 834604.0 30 959146.0 31 1123001.0 32 1345619.0 33 1659310.0 34 2132077.0 35 2841658.0 36 4171965.0 37 7176735.0 38 1.0245571E7 39 5785861.0 40 256165.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.75841185915783 21.32434327368241 14.561888347773758 24.355356519386 2 14.167038233433704 22.760667227058825 40.456018469614605 22.616276069892862 3 16.855190936263746 28.047117387079407 31.598052174768725 23.49963950188812 4 11.990398273775437 19.96556323727549 39.88945305574044 28.154585433208627 5 12.23455554600605 38.952354453853864 36.29392262704135 12.519167373098739 6 27.366914174038325 40.382678560677824 19.71473629092361 12.535670974360237 7 24.456406827877416 33.823495249818215 24.726091530755856 16.99400639154851 8 23.744721243476643 36.87401527828721 22.19545413450534 17.185809343730806 9 25.378134590740736 16.48823600460022 21.61869550763205 36.514933897027 10-11 23.055645638356374 27.311527494594223 30.174523181398964 19.45830368565043 12-13 24.417545000969962 25.062327304077126 29.88065517312425 20.63947252182866 14-15 21.668042327938448 26.171170850979724 27.502923400940283 24.65786342014155 16-17 21.01868235776509 29.292033850199584 28.015915062328283 21.67336872970704 18-19 21.123036108282825 28.424475372514515 29.736008751969067 20.716479767233597 20-21 22.068089443586068 27.571009352275876 29.477900720796214 20.883000483341846 22-23 21.690213340157317 27.584876247752643 29.384801272758732 21.34010913933131 24-25 21.46034740463644 27.755455767225662 29.433204216340926 21.350992611796975 26-27 21.465309300039763 27.857969671638706 29.305861626686724 21.370859401634807 28-29 21.405831450941033 27.85158394660432 29.35802377988182 21.38456082257283 30-31 21.737256706405255 27.70709554809066 29.26389710991032 21.29175063559377 32-33 21.44376559274881 27.92806964013282 29.21184719854019 21.41631756857818 34-35 21.596429707172454 27.922723890157563 29.187109513184993 21.293736889484986 36-37 21.57664950932254 27.88047490571193 29.12106885354978 21.421806731415746 38-39 21.48530228758071 27.885260259971822 29.187624761880958 21.44181269056651 40-41 21.663756407923167 27.79893320369898 29.053545015164044 21.48376537321381 42-43 21.654287410086322 27.88385382550212 28.877504589864472 21.584354174547087 44-45 21.671484054420887 28.020527934205614 28.676320685582883 21.631667325790612 46-47 21.842994416899927 28.000586651640663 28.318146240948934 21.83827269051048 48-49 21.77274135396991 28.107858282255 28.304952005718775 21.814448358056314 50-51 21.72536093454499 28.229776482022373 28.188601775550225 21.856260807882414 52-53 21.881190014021655 28.161083949169875 28.172291617258672 21.785434419549798 54-55 21.839527766655056 28.08494798037671 28.217110089939613 21.85841416302862 56-57 21.88479826270564 28.194654733015685 28.099091506475798 21.821455497802873 58-59 21.82285596306968 28.257482543493612 28.16630093180325 21.753360561633453 60-61 21.908818372445317 28.274423592552928 28.075503807835528 21.74125422716623 62-63 21.793135825095593 28.387720685831564 28.055321462039256 21.763822027033587 64-65 21.78950085952006 28.29247978466392 28.068769138749865 21.84925021706615 66-67 21.88479453415009 28.310008258268148 27.972725886073395 21.83247132150836 68-69 21.85316343223607 28.263629062557733 28.01487609206451 21.86833141314169 70-71 21.88978178837446 28.013493614399398 28.10306870484615 21.993655892379987 72-73 21.907578124468355 28.08287110133465 28.039394091856778 21.97015668234022 74-75 21.754999798941498 28.189675005210006 28.053318098926383 22.00200709692211 76-77 21.877990310464774 28.16739019138725 27.989456343716025 21.965163154431956 78-79 21.862369195122984 28.19108364864535 27.95250060525758 21.994046550974087 80-81 21.867431146894774 28.175069921742786 27.94025893007693 22.01724000128552 82-83 21.87528507129648 28.146532860151453 28.02263903906591 21.955543029486158 84-85 21.9192745016297 28.133069329631784 28.014584371561746 21.933071797176773 86-87 21.808571329957534 28.159183737670347 28.06336213075527 21.968882801616846 88-89 21.89799907600766 28.152295770740555 27.98604827928542 21.963656873966368 90-91 21.870865832695003 28.189074041226984 28.050293282114858 21.889766843963155 92-93 21.88729657007358 28.178256303750874 27.999055176091307 21.935391950084234 94-95 21.755546295303265 28.21412122767224 28.059992214538944 21.970340262485553 96-97 21.782392013085 28.361927049873042 28.135874607640606 21.719806329401354 98-99 22.81365542987285 30.307813060640232 28.359902044489576 18.518629464997346 100 21.890176976398763 31.35859804877377 22.074159474734465 24.677065500092997 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7335.0 1 7642.0 2 12742.0 3 17861.5 4 22376.5 5 37449.0 6 50757.0 7 58997.5 8 63158.5 9 58886.0 10 49321.0 11 39194.5 12 40866.0 13 57725.0 14 101151.5 15 164733.5 16 217102.0 17 245808.5 18 252695.0 19 241462.0 20 220064.0 21 200977.5 22 196222.5 23 215786.5 24 260774.5 25 329415.5 26 420083.0 27 519867.0 28 617912.0 29 724013.0 30 830263.5 31 931550.0 32 1036591.0 33 1136779.0 34 1237379.5 35 1330093.0 36 1420391.5 37 1501452.0 38 1557146.5 39 1608652.5 40 1669330.5 41 1714986.5 42 1741875.5 43 1772198.5 44 1800795.0 45 1819435.5 46 1808848.0 47 1780909.0 48 1748334.5 49 1698286.0 50 1643583.0 51 1571568.5 52 1477782.0 53 1372910.0 54 1262920.5 55 1157486.0 56 1051360.5 57 941978.5 58 830591.5 59 720835.0 60 606288.0 61 492237.5 62 389797.0 63 302928.0 64 230478.5 65 172608.0 66 129893.0 67 100515.0 68 78994.0 69 59988.0 70 44621.0 71 33296.0 72 24854.5 73 18316.5 74 13551.0 75 10089.0 76 7343.5 77 5178.5 78 3770.5 79 2778.0 80 2057.0 81 1553.5 82 1211.5 83 852.5 84 593.5 85 452.5 86 357.5 87 279.0 88 186.5 89 122.5 90 85.5 91 64.5 92 50.0 93 26.0 94 9.5 95 7.5 96 6.0 97 4.0 98 3.5 99 6.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.013319979448769056 3 0.0 4 0.12698333098363 5 0.03673106746234876 6 0.004790083179498728 7 0.005066843540980876 8 4.8728747406258664E-4 9 8.089918258708962E-4 10-11 0.004738042769647384 12-13 6.85987220767719E-5 14-15 4.6126726913691456E-5 16-17 4.0331317634791753E-4 18-19 2.4837468338141553E-5 20-21 8.889973310429795E-4 22-23 0.030158011649949714 24-25 0.001001448778386742 26-27 0.0044685586345111356 28-29 5.497916682285748E-4 30-31 0.0025942659946607263 32-33 0.003420864755124773 34-35 0.019813337204013282 36-37 0.0043558867825531184 38-39 0.001582076643994198 40-41 9.893478988143825E-4 42-43 9.27497678672587E-4 44-45 0.030565831628194633 46-47 0.003907266962843933 48-49 0.005739282547205852 50-51 0.01941717801223997 52-53 0.004314701849095582 54-55 9.670651608634676E-4 56-57 0.0012609773418524686 58-59 0.004034816858769948 60-61 0.00289399781147042 62-63 8.635370198720822E-4 64-65 1.5336537306382607E-4 66-67 1.3566834841151358E-6 68-69 3.6410687034896244E-4 70-71 0.01335059671515905 72-73 0.004109355370707848 74-75 0.0030520016496561175 76-77 7.09402823709837E-6 78-79 0.0 80-81 8.533472553322162E-5 82-83 1.0228410040125468E-5 84-85 2.8040276167204166E-5 86-87 0.0055653049852728885 88-89 0.0 90-91 8.38756452972771E-5 92-93 1.1893695141393097E-4 94-95 2.975605888955838E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24821.0 20-21 48328.0 22-23 49979.0 24-25 53964.0 26-27 62721.0 28-29 84866.0 30-31 127390.0 32-33 145322.0 34-35 176926.0 36-37 222472.0 38-39 272933.0 40-41 281420.0 42-43 326124.0 44-45 387514.0 46-47 373545.0 48-49 330293.0 50-51 290296.0 52-53 272488.0 54-55 285888.0 56-57 300325.0 58-59 310291.0 60-61 310672.0 62-63 295070.0 64-65 307245.0 66-67 323458.0 68-69 337805.0 70-71 337150.0 72-73 309683.0 74-75 306139.0 76-77 320841.0 78-79 340839.0 80-81 354047.0 82-83 340184.0 84-85 338990.0 86-87 352685.0 88-89 383051.0 90-91 413123.0 92-93 433785.0 94-95 499681.0 96-97 1369045.0 98-99 2715938.0 100-101 2.7457503E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.97175864272259 #Duplication Level Percentage of deduplicated Percentage of total 1 86.97510098597456 69.55551783976782 2 8.452853483854435 13.519791173062073 3 2.3395672226854227 5.612979157830704 4 0.958274776672448 3.065396766138316 5 0.47482165971923246 1.8986161584701708 6 0.25927661268389157 1.2440884014755305 7 0.14389962963916048 0.8055534515196078 8 0.10073155643689827 0.6444543775261934 9 0.06788894579065423 0.48862785485511695 >10 0.22150284575257442 2.6348015414824464 >50 0.004652362884260688 0.24844430021995692 >100 0.0013463841468002945 0.1782861467764432 >500 3.287604939207938E-5 0.018061122741617707 >1k 5.065771030678757E-5 0.08538170813387835 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.41928390503666E-5 2 0.0 3.0751151275794304E-5 0.0 2.3654731750611E-6 1.41928390503666E-5 3 0.0 3.0751151275794304E-5 0.0 9.4618927002444E-6 1.41928390503666E-5 4 0.0 8.51570343021996E-5 0.0 2.12892585755499E-5 1.41928390503666E-5 5 2.3654731750611E-6 8.98879806523218E-5 0.0 2.6020204925672102E-5 1.41928390503666E-5 6 4.9674936676283105E-5 9.225345382738291E-5 0.0 2.6020204925672102E-5 2.6020204925672102E-5 7 4.9674936676283105E-5 9.225345382738291E-5 0.0 3.78475708009776E-5 2.6020204925672102E-5 8 5.2040409851344205E-5 1.0171534652762731E-4 0.0 3.78475708009776E-5 2.6020204925672102E-5 9 5.4405883026405304E-5 1.916033271799491E-4 0.0 1.159081855779939E-4 3.3116624450855404E-5 10-11 5.913682937652751E-5 1.916033271799491E-4 0.0 1.3364923439095216E-4 3.903030738850815E-5 12-13 6.386777572664971E-5 1.916033271799491E-4 0.0 1.537557563789715E-4 4.6126726913691456E-5 14-15 6.741598548924135E-5 2.6493299560684323E-4 0.0 1.608521759041548E-4 5.913682937652751E-5 16-17 1.159081855779939E-4 2.767603614821487E-4 0.0 1.797759613046436E-4 6.978145866430246E-5 18-19 1.2300460510317722E-4 3.07511512757943E-4 0.0 1.963342735300713E-4 7.56951416019552E-5 20-21 1.253700782782383E-4 3.4299361038385955E-4 0.0 2.140753223430296E-4 8.04260879520774E-5 22-23 1.41928390503666E-4 4.092268592855703E-4 0.0 2.3654731750611004E-4 8.397429771466906E-5 24-25 1.6321764907921592E-4 4.5890179596185345E-4 0.0 2.767603614821487E-4 8.51570343021996E-5 26-27 1.726795417794603E-4 4.884702106501172E-4 0.0 3.3471445427114566E-4 8.51570343021996E-5 28-29 1.750450149545214E-4 4.932011570002394E-4 0.0 5.334142009762781E-4 8.51570343021996E-5 30-31 1.8332417106723526E-4 5.819064010650307E-4 0.0 0.0013317613975593993 8.51570343021996E-5 32-33 1.9278606376747965E-4 5.901855571777445E-4 0.0 0.002865770751586523 1.0881176605281061E-4 34-35 2.081616394053768E-4 6.717943817173525E-4 0.0 0.004894163999201416 1.18273658753055E-4 36-37 2.105271125804379E-4 7.640478355447353E-4 0.0 0.007775310326425837 1.2300460510317722E-4 38-39 2.1170984916796845E-4 7.995299331706519E-4 0.0 0.01251571856924828 1.3246649780342161E-4 40-41 2.1289258575549902E-4 8.764078113601376E-4 0.0 0.018011895491502748 1.3601470756601327E-4 42-43 2.1289258575549902E-4 9.142553821611151E-4 0.0 0.0232017436375868 1.3956291732860493E-4 44-45 2.1407532234302956E-4 0.0010183362018638036 0.0 0.02900543207259921 1.4311112709119655E-4 46-47 2.152580589305601E-4 0.0010928486068782282 0.0 0.035149748644820414 1.466593368537882E-4 48-49 2.1998900528068233E-4 0.0010952140800532893 0.0 0.04132481636831742 1.5730396614156315E-4 50-51 2.4719194679388495E-4 0.0012217668949190581 0.0 0.04746321925760097 1.608521759041548E-4 52-53 2.507401565564766E-4 0.001238325207144486 0.0 0.05348216575154394 1.632176490792159E-4 54-55 2.507401565564766E-4 0.0012477870998447303 0.0 0.058811576814956606 1.6794859542933812E-4 56-57 2.507401565564766E-4 0.0012702590950078108 0.0 0.06283169847597295 1.703140686043992E-4 58-59 2.519228931440071E-4 0.0012761727779454636 0.0 0.06691687064930346 1.7386227836699086E-4 60-61 2.625675224317821E-4 0.001301010246283605 0.0 0.07116171226195062 1.750450149545214E-4 62-63 2.885877273574542E-4 0.0013400405536721132 0.0 0.07522322970353051 1.797759613046436E-4 64-65 2.885877273574542E-4 0.0014417559001997406 0.0 0.07884950008089918 1.8095869789217417E-4 66-67 3.015978298202903E-4 0.0014701415783004738 0.0 0.08263898810734707 1.8450690765476583E-4 68-69 3.051460395828819E-4 0.0015198165149767568 0.0 0.08644739991919544 1.868723808298269E-4 70-71 3.1579066887065687E-4 0.0015517504028400818 0.0 0.08991991454018514 1.9160332717994914E-4 72-73 3.394454006212679E-4 0.0015659432418904484 0.0 0.09268751815500662 2.057961662303157E-4 74-75 3.406281372087984E-4 0.0016144354419792009 0.0 0.09485429158336259 2.057961662303157E-4 76-77 3.4417634697139006E-4 0.001724429944619542 0.0 0.09688623304074007 2.0816163940537682E-4 78-79 3.4535908355892063E-4 0.0017634602520080502 0.0 0.09815767487233541 2.0816163940537682E-4 80-81 3.4535908355892063E-4 0.0017658257251831112 0.0 0.09860829751218456 2.1762353210562122E-4 82-83 3.4535908355892063E-4 0.0017705566715332335 0.0 0.09893355007375546 2.3536458091857947E-4 84-85 3.4535908355892063E-4 0.001782384037408539 0.0 0.09904827552274592 2.4009552726870167E-4 86-87 3.536382396716345E-4 0.0018107697155092723 0.0 0.09909085403989701 2.4364373703129332E-4 88 3.5482097625916503E-4 0.001916033271799491 0.0 0.09909676772283467 2.483746833814155E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 56380 0.0 49.55747 1 GTATCAA 101890 0.0 37.049168 1 TCAACGC 125320 0.0 29.549845 4 ATCAACG 125700 0.0 29.524628 3 CAACGCA 128110 0.0 28.885881 5 TATCAAC 131985 0.0 28.289207 2 AACGCAG 132395 0.0 28.011343 6 ACGCAGA 151030 0.0 24.509901 7 CGCAGAG 153185 0.0 24.162245 8 GCAGAGT 179410 0.0 20.34209 9 GTACATG 131255 0.0 19.873434 1 TACATGG 129400 0.0 19.652975 2 ACATGGG 131825 0.0 18.888803 3 GAGTACT 103340 0.0 18.883177 12-13 AGAGTAC 161955 0.0 18.831993 10-11 CAGAGTA 174480 0.0 18.178669 10-11 CTTATAC 26725 0.0 17.44588 1 CATGGGG 84540 0.0 16.710901 4 AGTACTT 113860 0.0 16.553982 12-13 GTACTTT 118230 0.0 16.504812 14-15 >>END_MODULE