##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138896_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 54717425 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.594092960332105 31.0 31.0 34.0 28.0 34.0 2 31.633889807497336 33.0 31.0 34.0 28.0 34.0 3 31.728524121886217 33.0 31.0 34.0 28.0 34.0 4 35.252355789768984 37.0 35.0 37.0 32.0 37.0 5 35.0724982215446 37.0 35.0 37.0 32.0 37.0 6 35.11974956789359 37.0 35.0 37.0 32.0 37.0 7 34.99660221583892 37.0 35.0 37.0 32.0 37.0 8 35.021544124198094 37.0 35.0 37.0 32.0 37.0 9 36.540786778617594 39.0 37.0 39.0 32.0 39.0 10-11 36.489291281525034 39.0 37.0 39.0 32.0 39.0 12-13 36.45771326044674 39.0 37.0 39.0 32.0 39.0 14-15 37.65013838827394 40.0 37.0 41.0 32.0 41.0 16-17 37.67144153804752 40.0 37.0 41.0 32.0 41.0 18-19 37.727931285143626 40.0 37.0 41.0 32.0 41.0 20-21 37.755503357664146 40.0 37.0 41.0 32.0 41.0 22-23 37.71996963021974 40.0 37.0 41.0 32.0 41.0 24-25 37.71357966753517 40.0 37.0 41.0 31.0 41.0 26-27 37.645046186228164 40.0 37.0 41.0 31.0 41.0 28-29 37.590896209325095 40.0 37.0 41.0 31.0 41.0 30-31 37.49962064143258 40.0 37.0 41.0 31.0 41.0 32-33 37.42374528618356 40.0 36.0 41.0 31.0 41.0 34-35 37.33544632342692 40.0 36.0 41.0 30.0 41.0 36-37 37.300596583789 40.0 36.0 41.0 30.0 41.0 38-39 37.24488048603396 40.0 36.0 41.0 30.0 41.0 40-41 37.226235256808266 40.0 36.0 41.0 30.0 41.0 42-43 37.190763337784674 40.0 36.0 41.0 30.0 41.0 44-45 37.11789296452032 40.0 36.0 41.0 30.0 41.0 46-47 37.04323366774531 39.5 35.5 41.0 30.0 41.0 48-49 36.98432712004963 39.0 35.0 41.0 30.0 41.0 50-51 36.91015150812359 39.0 35.0 41.0 30.0 41.0 52-53 37.12248591901225 39.0 36.0 41.0 30.0 41.0 54-55 37.11205821778965 39.0 35.0 41.0 30.0 41.0 56-57 37.027572348259696 39.0 35.0 41.0 30.0 41.0 58-59 36.891982919094225 39.0 35.0 41.0 30.0 41.0 60-61 36.76560213615193 39.0 35.0 41.0 30.0 41.0 62-63 36.60263317483597 38.5 35.0 41.0 30.0 41.0 64-65 36.39977113202719 38.0 35.0 40.0 30.0 41.0 66-67 36.170556907603284 37.5 34.5 40.0 29.5 41.0 68-69 35.913293214416235 37.0 34.0 40.0 29.0 41.0 70-71 35.66019992358683 36.5 34.0 39.5 29.0 41.0 72-73 35.382597890912194 36.0 34.0 39.0 29.0 41.0 74-75 35.11294656845364 36.0 34.0 39.0 29.0 40.5 76-77 34.818887402498504 35.0 34.0 37.5 29.0 40.0 78-79 34.54621686862572 35.0 34.0 37.0 29.0 39.0 80-81 34.288060156815035 35.0 34.0 37.0 29.0 39.0 82-83 34.03183158109455 35.0 33.0 36.0 29.0 38.5 84-85 33.822795521386176 35.0 33.0 36.0 29.0 37.0 86-87 33.60395016455351 35.0 33.0 36.0 29.0 37.0 88-89 33.46529944187262 35.0 33.0 35.0 29.0 36.5 90-91 33.36910560810436 35.0 33.0 35.0 29.0 36.0 92-93 33.300226279454584 35.0 33.0 35.0 29.0 36.0 94-95 33.35661206303236 35.0 33.0 35.0 29.0 36.0 96-97 33.54174703030516 35.0 33.5 35.0 30.0 36.0 98-99 33.63867894049688 35.0 34.0 35.0 30.0 35.5 100 32.84296504600573 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 5.0 14 27.0 15 71.0 16 164.0 17 805.0 18 5912.0 19 30141.0 20 93129.0 21 202828.0 22 335334.0 23 457528.0 24 566962.0 25 668724.0 26 761127.0 27 852944.0 28 959007.0 29 1089147.0 30 1248069.0 31 1461886.0 32 1756716.0 33 2159021.0 34 2777235.0 35 3710771.0 36 5472374.0 37 9415573.0 38 1.3097615E7 39 7260311.0 40 333996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.94199653949359 21.2094264304287 14.427109828359065 24.421467201718645 2 14.374716484258213 22.74533129608382 40.04548973406612 22.834462485591853 3 16.943015867431626 27.99747064120799 31.481792134772423 23.57772135658796 4 12.228139712848511 19.7666005503151 39.69509475813952 28.310164978696868 5 12.395073615067153 38.82488591736893 36.16842732173753 12.61161314582638 6 27.679255920001992 40.10054909861437 19.568845058669908 12.651349922713727 7 24.51613052976481 33.74625906529045 24.75977299002875 16.977837414915992 8 23.888116634708382 36.59999532139461 22.140301141360407 17.37158690253661 9 25.40810621107449 16.475409857037864 21.58723377518134 36.529250156706304 10-11 23.18483950295255 27.14906024654108 30.062460641344853 19.60363960916152 12-13 24.51425283416117 24.938382238528394 29.772813228878892 20.774551698431544 14-15 21.838064245424274 26.043153263648843 27.344918547011865 24.773863943915018 16-17 21.23130838057739 29.099537755059757 27.873763283128373 21.795390581234482 18-19 21.323044104104884 28.289230599126007 29.539528207771156 20.84819708899795 20-21 22.213073824569086 27.44101311697664 29.320618746556722 21.025294311897554 22-23 21.893051183745303 27.40862807291351 29.19407290056002 21.50424784278116 24-25 21.648020062985932 27.584483930540472 29.2068573279574 21.560638678516195 26-27 21.64354289711755 27.699355390247522 29.10911641113923 21.5479853014957 28-29 21.636028677664665 27.60526714326653 29.192206806200428 21.566497372868376 30-31 21.849826023710854 27.553206799591358 29.068026245660732 21.528940931037056 32-33 21.72010163685002 27.703045352977938 28.99370041440633 21.583152595765707 34-35 21.794714257152393 27.701033931945453 28.945211981951648 21.559039828950507 36-37 21.83925863107823 27.662534410644597 28.855490235811114 21.642716722466066 38-39 21.736958783189422 27.71974941777865 28.920166718249305 21.62312508078262 40-41 21.884826481968002 27.628645684663784 28.817538770073774 21.66898906329444 42-43 21.831019457935565 27.752188089227065 28.620423920050293 21.79636853278708 44-45 21.892846032776177 27.831488054614784 28.434964986028767 21.840700926580272 46-47 22.035594055615086 27.853219495001774 28.10891273697128 22.002273712411863 48-49 21.96369389024795 27.94570911881269 28.08106421860565 22.00953277233371 50-51 21.95155260029846 28.05308304439757 27.96692887921724 22.028435476086734 52-53 22.104646205502867 27.971366744356324 27.919690593348705 22.004296456792105 54-55 22.057560981770393 27.913681280146836 27.97338583651079 22.055371901571977 56-57 22.070173627760187 28.012830918161786 27.91609163263781 22.00090382144022 58-59 22.049520951448027 28.021825057761713 27.92341947436175 22.005234516428512 60-61 22.10748325454128 28.01384265698623 27.901170512864876 21.977503575607614 62-63 22.05255683879367 28.1164052341831 27.84623382746426 21.984804099558964 64-65 22.04770371003936 28.033588696250355 27.829073247129354 22.08963434658093 66-67 22.105893208573864 28.061295968747935 27.776525157866743 22.056285664811455 68-69 22.06816798907118 28.021618691905744 27.82277173250541 22.08744158651767 70-71 22.091709617642604 27.823187568394392 27.884670323107645 22.20043249085536 72-73 22.11236419555662 27.878512438814056 27.805986563766673 22.203136801862648 74-75 21.964111068653853 27.997977363674032 27.826403161529157 22.211508406142958 76-77 22.103775200435212 27.952207412148734 27.780408801578282 22.16360858583777 78-79 22.056268374456288 27.95962542980114 27.760482523533053 22.22362367220952 80-81 22.089808617304886 27.958363859784825 27.72029700714926 22.23153051576103 82-83 22.074500883042685 27.938467235426273 27.792827832518757 22.194204049012285 84-85 22.101212337493102 27.94080960059327 27.8079992402147 22.149978821698934 86-87 22.028825973372427 27.965854790728823 27.835205134562464 22.17011410133629 88-89 22.079742921091647 27.95537161064804 27.795325000586786 22.169560467673534 90-91 22.086615212678375 27.979781005291542 27.81718790325256 22.11641587877752 92-93 22.12511170195588 27.962913113524383 27.778689490704835 22.13328569381491 94-95 21.961959728328896 27.984155862379723 27.860911446353185 22.192972962938196 96-97 22.013395775859262 28.129249002542974 27.918638936464234 21.93871628513353 98-99 23.073427221526718 30.08973847042529 28.112512429722553 18.72432187832544 100 22.140351064562225 31.081006641818327 21.845547504177283 24.933094789442162 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 10978.0 1 11205.0 2 17481.5 3 23689.5 4 28669.0 5 46828.5 6 63694.0 7 75066.5 8 82215.0 9 78031.5 10 65476.0 11 52074.5 12 53385.5 13 73282.5 14 125680.0 15 202771.5 16 267208.0 17 303433.5 18 312466.5 19 299409.5 20 275090.5 21 253513.0 22 247540.5 23 271508.0 24 327214.0 25 412476.0 26 530273.5 27 659062.5 28 786004.0 29 921177.0 30 1053179.5 31 1178689.0 32 1311914.5 33 1441946.0 34 1566670.5 35 1680989.0 36 1795051.5 37 1902409.0 38 1981113.0 39 2046391.0 40 2114473.5 41 2174972.0 42 2218000.0 43 2257862.0 44 2292346.0 45 2318479.0 46 2314417.0 47 2295440.0 48 2272454.0 49 2220840.5 50 2157140.5 51 2079164.0 52 1978565.5 53 1854951.5 54 1724117.0 55 1592907.0 56 1458545.5 57 1316938.0 58 1167474.0 59 1017558.0 60 857510.0 61 700731.5 62 560208.0 63 436653.0 64 332698.5 65 252507.5 66 191610.5 67 147431.5 68 114785.0 69 86988.5 70 65239.5 71 49244.0 72 36637.5 73 26633.5 74 19363.0 75 14234.5 76 10260.0 77 7263.5 78 5338.5 79 3991.5 80 2967.0 81 2225.5 82 1755.5 83 1205.0 84 800.5 85 612.5 86 487.5 87 375.0 88 239.5 89 146.5 90 103.5 91 82.5 92 59.0 93 30.0 94 17.0 95 16.5 96 16.0 97 14.0 98 10.0 99 14.0 100 22.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012900826382089434 3 0.0 4 0.12760834414265657 5 0.03616946521149341 6 0.004866822588965032 7 0.005161061581388379 8 4.843064161005384E-4 9 7.65752408853304E-4 10-11 0.004841236589623872 12-13 8.132692647726021E-5 14-15 6.213742697138982E-5 16-17 4.0663463238630105E-4 18-19 2.284464226889332E-5 20-21 8.798628094493278E-4 22-23 0.030278223855432725 24-25 0.0010516830422060118 26-27 0.004540404884017584 28-29 5.785121192540652E-4 30-31 0.0026726572294792634 32-33 0.003483240852795402 34-35 0.019916000563314957 36-37 0.004575066473477295 38-39 0.0016824835288569056 40-41 0.0010544998499180255 42-43 9.74678648259302E-4 44-45 0.030877784387092256 46-47 0.004030320891511637 48-49 0.005900830262872003 50-51 0.019640729066943242 52-53 0.00445786665881143 54-55 0.001030380611973516 56-57 0.0012740389863810486 58-59 0.004171928441371813 60-61 0.003002856012036828 62-63 8.996580677459109E-4 64-65 1.4317910773100191E-4 66-67 4.2169836719130195E-6 68-69 3.2667007602400083E-4 70-71 0.013372577755399177 72-73 0.004147108245719298 74-75 0.0029623350591872575 76-77 3.3148688874881236E-6 78-79 0.0 80-81 5.863962123134995E-5 82-83 4.5598164126715936E-6 84-85 2.304054851988726E-5 86-87 0.005654279556058013 88-89 0.0 90-91 7.035766557797123E-5 92-93 1.3174093432918684E-4 94-95 3.065436574817522E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 33957.0 20-21 66251.0 22-23 68152.0 24-25 73284.0 26-27 86056.0 28-29 114360.0 30-31 169564.0 32-33 194221.0 34-35 236748.0 36-37 301172.0 38-39 365479.0 40-41 376154.0 42-43 432492.0 44-45 512140.0 46-47 496413.0 48-49 443967.0 50-51 395177.0 52-53 371738.0 54-55 390315.0 56-57 407740.0 58-59 420955.0 60-61 420723.0 62-63 397784.0 64-65 407875.0 66-67 434573.0 68-69 450004.0 70-71 451143.0 72-73 422519.0 74-75 418196.0 76-77 437301.0 78-79 462427.0 80-81 480140.0 82-83 463068.0 84-85 457589.0 86-87 476147.0 88-89 515449.0 90-91 555053.0 92-93 579747.0 94-95 662166.0 96-97 1778642.0 98-99 3471971.0 100-101 3.5018573E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.6932444486615 #Duplication Level Percentage of deduplicated Percentage of total 1 87.29160290841006 69.56551048895415 2 8.2587055971561 13.163260879673802 3 2.2274654579552333 5.325418477253284 4 0.9018955963954522 2.8749994492285653 5 0.45554198181773503 1.8151809256814238 6 0.2548342406831049 1.2185140461988633 7 0.1677563653065135 0.9358334319733658 8 0.10748113434093623 0.6852416250121327 9 0.06934166401196205 0.4973455962524022 >10 0.25740126898082943 3.191053518109458 >50 0.005409557999357777 0.2965527861759495 >100 0.002472926119394029 0.3266523211321498 >500 4.671618248155328E-5 0.027436795045216362 >1k 4.4584640854085516E-5 0.07699965930920266 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 1.8275713815114655E-6 0.0 0.0 0.0 2 0.0 2.0103285196626122E-5 0.0 3.655142763022931E-6 0.0 3 0.0 2.375842795964905E-5 0.0 3.655142763022931E-6 0.0 4 0.0 6.39649983529013E-5 0.0 7.310285526045862E-6 0.0 5 0.0 6.762014111592422E-5 0.0 7.310285526045862E-6 0.0 6 1.8275713815114656E-5 6.944771249743569E-5 0.0 7.310285526045862E-6 1.8275713815114655E-6 7 1.8275713815114656E-5 7.127528387894715E-5 0.0 7.310285526045862E-6 1.8275713815114655E-6 8 1.8275713815114656E-5 7.675799802348155E-5 0.0 7.310285526045862E-6 1.8275713815114655E-6 9 2.0103285196626122E-5 1.4072299637638285E-4 0.0 2.5585999341160517E-5 1.8275713815114655E-6 10-11 2.2844642268893316E-5 1.4620571052091725E-4 0.0 2.924114210418345E-5 1.8275713815114655E-6 12-13 2.375842795964905E-5 1.4986085328394017E-4 0.0 3.198249917645064E-5 1.8275713815114655E-6 14-15 2.375842795964905E-5 1.9463635213097107E-4 0.0 3.7465213320985043E-5 6.396499835290129E-6 16-17 3.289628486720638E-5 2.037742090385284E-4 0.0 4.294792746551944E-5 1.2792999670580258E-5 18-19 3.289628486720638E-5 2.2204992285364305E-4 0.0 6.213742697138984E-5 1.4620571052091724E-5 20-21 3.7465213320985043E-5 2.49463493576315E-4 0.0 7.401664095121435E-5 1.553435674284746E-5 22-23 4.1120356084007975E-5 2.8418734982503286E-4 0.0 9.868885460161914E-5 2.1930856578137585E-5 24-25 4.203414177476371E-5 3.106871348569491E-4 0.0 1.33412710850337E-4 2.924114210418345E-5 26-27 4.203414177476371E-5 3.271352772905523E-4 0.0 1.8184335246039082E-4 3.106871348569492E-5 28-29 4.203414177476371E-5 3.307904200535752E-4 0.0 3.993243468602552E-4 3.289628486720638E-5 30-31 4.203414177476371E-5 3.8744513288043066E-4 0.0 0.0010471984016060696 3.289628486720638E-5 32-33 4.751685591929811E-5 3.956692040972323E-4 0.0 0.0024781867933295473 3.289628486720638E-5 34-35 5.29995700638325E-5 4.5597905968711063E-4 0.0 0.004239051819415844 3.289628486720638E-5 36-37 5.4827141445343965E-5 5.071510583694316E-4 0.0 0.007007822462405715 3.289628486720638E-5 38-39 5.5740927136099696E-5 5.318232720198364E-4 0.0 0.011480803418655025 3.289628486720638E-5 40-41 5.665471282685543E-5 5.839090563929132E-4 0.0 0.016310160794299075 3.289628486720638E-5 42-43 6.305121266214556E-5 6.122364128063409E-4 0.0 0.02073105596617531 3.289628486720638E-5 44-45 6.762014111592422E-5 6.789427682315094E-4 0.0 0.02562803348293528 3.381007055796211E-5 46-47 7.127528387894715E-5 7.282871955323191E-4 0.0 0.03113359226973857 3.472385624871784E-5 48-49 7.218906956970289E-5 7.355974810583649E-4 0.0 0.03660442720029314 3.8378999011740775E-5 50-51 8.315449785877168E-5 8.141830504633579E-4 0.0 0.042456310763892856 3.8378999011740775E-5 52-53 8.406828354952741E-5 8.224071216801595E-4 0.0 0.04781566384017523 4.112035608400797E-5 54-55 8.406828354952741E-5 8.333725499692283E-4 0.0 0.05267152100085119 4.477549884703091E-5 56-57 8.406828354952741E-5 8.4799312102132E-4 0.0 0.05662273032767898 4.568928453778664E-5 58-59 8.406828354952741E-5 8.525620494750986E-4 0.0 0.06101986707159557 4.751685591929811E-5 60-61 9.2292354766329E-5 8.808894058885263E-4 0.0 0.06536491803113907 5.117199868232103E-5 62-63 1.05999140127665E-4 9.06475405229687E-4 0.0 0.06950893613871632 5.29995700638325E-5 64-65 1.05999140127665E-4 0.001001509117068283 0.0 0.07331576732640471 5.29995700638325E-5 66-67 1.1056806858144365E-4 0.0010133883310481076 0.0 0.0770376164448528 5.29995700638325E-5 68-69 1.1330942565371085E-4 0.0010471984016060696 0.0 0.08094405027283355 5.3913355754588234E-5 70-71 1.1879213979824527E-4 0.0010700430438749632 0.0 0.08430860918619618 5.84822842083669E-5 72-73 1.3524028223184845E-4 0.001080094686473276 0.0 0.08704631111570034 6.579256973441276E-5 74-75 1.3615406792260418E-4 0.001104766900123681 0.0 0.08921837970262672 6.579256973441276E-5 76-77 1.398092106856271E-4 0.0011696456841673378 0.0 0.09129906972047752 6.67063554251685E-5 78-79 1.4620571052091725E-4 0.0011943178978177428 0.0 0.09259024890151538 6.762014111592422E-5 80-81 1.4620571052091725E-4 0.001199800611962277 0.0 0.09305719338949156 7.218906956970289E-5 82-83 1.507746389746959E-4 0.0012061971117975673 0.0 0.09337062188142077 7.858556940499301E-5 84-85 1.5534356742847455E-4 0.0012199038971589032 0.0 0.09345925909342409 7.858556940499301E-5 86-87 1.589987101914975E-4 0.001240920968046285 0.0 0.09349215537829128 7.858556940499301E-5 88 1.6265385295452043E-4 0.0013158513946882552 0.0 0.09349672430674506 7.858556940499301E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 69525 0.0 49.578693 1 GTATCAA 125670 0.0 36.60965 1 TCAACGC 155625 0.0 28.998302 4 ATCAACG 156780 0.0 28.79532 3 CAACGCA 158685 0.0 28.399473 5 TATCAAC 163700 0.0 27.784533 2 AACGCAG 164620 0.0 27.44648 6 ACGCAGA 188470 0.0 23.905735 7 CGCAGAG 191035 0.0 23.591232 8 GCAGAGT 223680 0.0 19.827497 9 GTACATG 157915 0.0 19.483492 1 TACATGG 157995 0.0 19.002836 2 AGAGTAC 201400 0.0 18.537563 10-11 ACATGGG 160540 0.0 18.26727 3 GAGTACT 131690 0.0 18.224627 12-13 CAGAGTA 217350 0.0 17.81692 10-11 AGTACTT 144605 0.0 16.335794 12-13 CATGGGG 108355 0.0 16.21411 4 GTACTTT 150190 0.0 16.001394 14-15 GTGGTAT 31665 0.0 14.588125 1 >>END_MODULE