##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138895_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6771500 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.80890216347929 33.0 33.0 33.0 33.0 33.0 2 32.80514538876172 33.0 33.0 33.0 33.0 33.0 3 32.80590135125157 33.0 33.0 33.0 33.0 33.0 4 36.75046016392232 37.0 37.0 37.0 37.0 37.0 5 36.761687366167024 37.0 37.0 37.0 37.0 37.0 6 36.763597873440155 37.0 37.0 37.0 37.0 37.0 7 36.75057727239164 37.0 37.0 37.0 37.0 37.0 8 36.75026951192498 37.0 37.0 37.0 37.0 37.0 9 36.738232887838734 37.0 37.0 37.0 37.0 37.0 10-11 36.712749907701394 37.0 37.0 37.0 37.0 37.0 12-13 36.697901794284874 37.0 37.0 37.0 37.0 37.0 14-15 38.95629853060622 40.0 40.0 40.0 37.0 40.0 16-17 38.904222624233924 40.0 40.0 40.0 37.0 40.0 18-19 38.942914642250614 40.0 40.0 40.0 37.0 40.0 20-21 38.975348771557904 40.0 40.0 40.0 37.0 40.0 22-23 39.00596638088585 40.0 40.0 40.0 37.0 40.0 24-25 38.996446440433964 40.0 40.0 40.0 37.0 40.0 26-27 38.90959437432201 40.0 40.0 40.0 37.0 40.0 28-29 38.83195322104767 40.0 38.5 40.0 37.0 40.0 30-31 38.7659826242196 40.0 37.0 40.0 37.0 40.0 32-33 38.72595234371297 40.0 37.0 40.0 37.0 40.0 34-35 38.69151286640143 40.0 37.0 40.0 37.0 40.0 36-37 38.65745389310573 40.0 37.0 40.0 37.0 40.0 38-39 38.6026846865379 40.0 37.0 40.0 37.0 40.0 40-41 38.569394413629766 40.0 37.0 40.0 37.0 40.0 42-43 38.51495480564152 40.0 37.0 40.0 37.0 40.0 44-45 38.427519694256574 40.0 37.0 40.0 37.0 40.0 46-47 38.339479721744254 40.0 37.0 40.0 37.0 40.0 48-49 38.29299771211035 40.0 37.0 40.0 37.0 40.0 50-51 38.22641361358919 40.0 37.0 40.0 37.0 40.0 52-53 38.16783493632373 40.0 37.0 40.0 37.0 40.0 54-55 38.09798810818907 40.0 37.0 40.0 37.0 40.0 56-57 37.988300444362864 40.0 37.0 40.0 35.0 40.0 58-59 37.85668224031466 40.0 37.0 40.0 33.0 40.0 60-61 37.687101927977146 40.0 37.0 40.0 33.0 40.0 62-63 37.49837400486335 37.0 37.0 40.0 33.0 40.0 64-65 37.2811272449586 37.0 37.0 40.0 33.0 40.0 66-67 37.04902769489289 37.0 37.0 40.0 33.0 40.0 68-69 36.784206907073894 37.0 37.0 40.0 33.0 40.0 70-71 36.530467040289395 37.0 37.0 40.0 33.0 40.0 72-73 36.28932518830241 37.0 37.0 37.0 33.0 40.0 74-75 36.03159987319542 37.0 37.0 37.0 33.0 40.0 76-77 34.383756840695085 35.0 33.0 37.0 30.0 37.0 78-79 35.640691219825854 37.0 35.0 37.0 33.0 37.0 80-81 35.771077065995755 37.0 37.0 37.0 33.0 37.0 82-83 35.68286805198585 37.0 37.0 37.0 33.0 37.0 84-85 35.57374991774582 37.0 37.0 37.0 33.0 37.0 86-87 35.48122081222475 37.0 35.0 37.0 33.0 37.0 88-89 35.38623580745425 37.0 33.0 37.0 33.0 37.0 90-91 35.324166884764 37.0 33.0 37.0 33.0 37.0 92-93 35.25584555406172 37.0 33.0 37.0 33.0 37.0 94-95 35.214946901354 37.0 33.0 37.0 33.0 37.0 96-97 35.17940059058809 37.0 33.0 37.0 33.0 37.0 98-99 35.14486767023696 37.0 33.0 37.0 33.0 37.0 100 35.0771133264407 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 1.0 19 7.0 20 22.0 21 119.0 22 432.0 23 1342.0 24 3067.0 25 6412.0 26 11638.0 27 19662.0 28 30023.0 29 42943.0 30 59167.0 31 80895.0 32 109114.0 33 149478.0 34 215180.0 35 329987.0 36 638574.0 37 1925392.0 38 3018880.0 39 129164.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.7145216612336 20.125871705197284 14.52894174966898 23.630664883900135 2 14.541715880297094 20.766542351485594 42.00016008274683 22.69158168547048 3 18.018475686458558 26.217375367976402 30.809449140765686 24.954699804799354 4 12.389199370090278 18.30817662640274 38.58619474443076 30.71642925907622 5 13.289774474424002 37.57684880963177 35.49485272115605 13.63852399478818 6 29.622234253041203 37.777519833868375 18.74690061194731 13.853345301143117 7 26.19514526990257 32.955524323344065 22.675865417686687 18.173464989066677 8 24.445429291210115 36.47772819578058 21.11209054302452 17.964751969984786 9 25.50253643986361 16.850700265923393 20.980952666462773 36.665810627750226 10-11 24.11836551121358 26.72973689210196 28.698820696951984 20.453076899732476 12-13 25.131979620468137 24.28476703832238 28.7716901720446 21.811563169164884 14-15 22.33005980949568 25.715661227202247 26.48481872554087 25.469460237761204 16-17 21.732348814885917 29.02907036845603 27.069851583844052 22.168729232813998 18-19 21.736941593443106 27.741172561470872 29.040087129882597 21.481798715203425 20-21 22.64507953732625 26.878064229295635 28.974940929696686 21.50191530368143 22-23 22.344660573081192 27.042528600927753 28.83674606759628 21.776064758394778 24-25 22.149538474493205 27.28274803510497 28.91518884819351 21.65252464220832 26-27 22.064027319900063 27.44636547758083 28.869653918365536 21.61995328415357 28-29 21.806928843799582 27.275308180799403 28.94204758540852 21.97571538999249 30-31 22.379306959327476 27.204970222586113 28.863929872291124 21.551792945795288 32-33 22.190386934839594 27.375138156049328 28.859421037337402 21.575053871773683 34-35 22.097087589418496 27.475000293681212 28.910424850397305 21.51748726650299 36-37 22.149719897133647 27.279251518446095 28.76700549905363 21.804023085366627 38-39 21.86307871742873 27.251209484338624 28.96569762816481 21.920014170067834 40-41 22.06187038730929 27.140518864682324 28.90918621768992 21.888424530318467 42-43 22.166724371990625 27.171517767661935 28.754418412480902 21.907339447866537 44-45 22.048587110671203 27.487456523029962 28.436565932712867 22.02739043358597 46-47 22.396486320036722 27.281269826904058 27.92444800814292 22.397795844916303 48-49 22.237579692572456 27.422044041146794 27.95702272460594 22.383353541674815 50-51 22.139441331933103 27.656957224725492 27.950962741657648 22.252638701683754 52-53 22.259126207497708 27.644965279847057 28.007502636093545 22.088405876561694 54-55 22.228645825161518 27.569563030274114 27.775684903544022 22.426106241020342 56-57 22.40505548247321 27.818750902314864 27.516251356903926 22.259942258307998 58-59 22.129369645675283 27.980483762494305 27.812545537941848 22.077601053888564 60-61 22.40484861808921 28.122628332511653 27.424029298917812 22.048493750481327 62-63 22.119497658995474 28.297458202638254 27.439253271316417 22.143790867049855 64-65 22.193984056394708 28.154034223672124 27.431045594238988 22.220936125694177 66-67 22.321683004098926 28.058121231933246 27.307052360057725 22.3131434039101 68-69 22.33189875467331 27.881510882711027 27.414958738514024 22.371631624101642 70-71 22.359890674389415 27.62714662012525 27.51691375026032 22.49604895522502 72-73 22.415195947256876 27.62769386145361 27.44642934568625 22.51068084560326 74-75 22.298101366735445 27.775106655027905 27.391490784508605 22.53530119372805 76-77 22.44095054113697 27.69028139086831 27.34804358309021 22.520724484904513 78-79 22.445811121129346 27.71522068739915 27.271696633732162 22.567271557739343 80-81 22.429524003568073 27.681278525076085 27.301070284328887 22.588127187026956 82-83 22.505349593073333 27.63517111601295 27.364239963326554 22.495239327587164 84-85 22.575680041385397 27.58848812107912 27.362124460320107 22.473707377215373 86-87 22.41502361566969 27.578091816216876 27.44956418140978 22.557320386703648 88-89 22.521959921571437 27.57464696858971 27.38654834307086 22.516844766767992 90-91 22.5847474589146 27.488160893208097 27.443278633179403 22.483813014697905 92-93 22.615306513806914 27.41057497166525 27.445057555028455 22.529060959499382 94-95 22.495392567521485 27.509266411103518 27.487944149353773 22.507396872021225 96-97 22.54689579860169 27.62270367283113 27.588830222024065 22.241570306543117 98-99 23.668328032061098 29.48007438583953 27.79446335703552 19.057134225063855 100 22.590012518464047 30.474034947302485 21.621960700997356 25.31399183323611 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1326.0 1 1203.5 2 1625.5 3 2362.5 4 3367.0 5 5597.5 6 7521.5 7 8876.5 8 9756.0 9 9838.5 10 9369.0 11 8851.5 12 9910.0 13 13273.5 14 20934.5 15 31279.5 16 39820.0 17 45235.0 18 46861.5 19 44689.5 20 40056.5 21 34647.0 22 31196.0 23 31622.0 24 35799.5 25 43697.0 26 55027.5 27 68298.0 28 81271.5 29 95225.5 30 109133.5 31 122269.5 32 137525.5 33 152846.0 34 168095.5 35 182230.0 36 196926.0 37 210823.5 38 220624.0 39 229818.5 40 240687.0 41 249796.0 42 256374.5 43 263812.0 44 269812.0 45 275306.5 46 280292.5 47 285109.5 48 295349.5 49 295808.0 50 285333.5 51 276835.0 52 264112.0 53 246055.5 54 227691.5 55 209865.5 56 191927.5 57 173857.5 58 155390.5 59 137029.0 60 116504.5 61 95726.5 62 76456.0 63 59073.0 64 44546.5 65 33176.0 66 24850.0 67 19157.5 68 14625.0 69 10448.0 70 7311.5 71 5209.5 72 3663.0 73 2453.5 74 1653.0 75 1082.0 76 696.5 77 436.5 78 274.5 79 193.5 80 138.0 81 98.5 82 70.0 83 50.0 84 35.0 85 24.0 86 18.5 87 14.5 88 10.0 89 6.5 90 3.5 91 1.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.953555342243225E-5 2 2.953555342243225E-5 3 8.860666026729677E-5 4 0.014856383371483423 5 0.0108986192128775 6 2.953555342243225E-5 7 1.4767776711216126E-5 8 1.4767776711216126E-5 9 1.4767776711216126E-5 10-11 7.383888355608063E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008995918821951193 26-27 0.05206991198352676 28-29 0.08105062182663829 30-31 0.06924039483746931 32-33 0.03294189348046341 34-35 0.004178277122371478 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.7217074904111843E-4 56-57 6.136510883263538E-4 58-59 8.149966556612236E-6 60-61 1.6455626005747295E-5 62-63 1.6616418616769556E-5 64-65 8.393667716350772E-6 66-67 0.0 68-69 0.0 70-71 5.2041614209442345E-5 72-73 0.015562816062227442 74-75 0.026098167478978022 76-77 0.001303507998941123 78-79 0.0 80-81 1.8232343320129776E-5 82-83 0.01288270764657812 84-85 0.05061594529864479 86-87 0.03870247026448069 88-89 0.009572138732959331 90-91 4.822935566545418E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 66.0 20-21 358.0 22-23 819.0 24-25 1874.0 26-27 2326.0 28-29 5401.0 30-31 13094.0 32-33 16949.0 34-35 23874.0 36-37 34726.0 38-39 41565.0 40-41 44412.0 42-43 52952.0 44-45 64191.0 46-47 62847.0 48-49 55145.0 50-51 47329.0 52-53 45244.0 54-55 51205.0 56-57 57778.0 58-59 57596.0 60-61 59313.0 62-63 60526.0 64-65 62917.0 66-67 69500.0 68-69 60599.0 70-71 56397.0 72-73 53361.0 74-75 55285.0 76-77 55489.0 78-79 58620.0 80-81 59487.0 82-83 57318.0 84-85 57312.0 86-87 60117.0 88-89 64779.0 90-91 67842.0 92-93 70997.0 94-95 77141.0 96-97 215927.0 98-99 400874.0 100-101 4367948.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.98278912381926 #Duplication Level Percentage of deduplicated Percentage of total 1 90.66827919000438 78.86579809003722 2 6.819665182325578 11.863869968985565 3 1.4788617934342623 3.859065705646968 4 0.48489566532144884 1.687103096148385 5 0.21231384458113364 0.9233825185634043 6 0.11877593636032001 0.6198877335248335 7 0.061995505121447 0.3774779364022437 8 0.04051092104067199 0.2819002321673971 9 0.02518926237273754 0.1971929067437146 >10 0.08766679004721897 1.1360167221522721 >50 0.0014554271612772628 0.08347853210770241 >100 3.402400899934448E-4 0.06062197029529875 >500 2.5121070332395184E-5 0.01662861680861683 >1k 2.512106922439821E-5 0.02757597041641298 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4767776711216126E-5 0.0 0.0 0.0 3 0.0 1.4767776711216126E-5 0.0 0.0 0.0 4 0.0 4.430333013364838E-5 0.0 2.953555342243225E-5 0.0 5 0.0 4.430333013364838E-5 0.0 2.953555342243225E-5 0.0 6 0.0 4.430333013364838E-5 0.0 2.953555342243225E-5 0.0 7 0.0 4.430333013364838E-5 0.0 2.953555342243225E-5 0.0 8 0.0 4.430333013364838E-5 0.0 2.953555342243225E-5 0.0 9 0.0 1.6244554382337738E-4 0.0 7.383888355608063E-5 0.0 10-11 0.0 1.6244554382337738E-4 0.0 8.860666026729675E-5 0.0 12-13 0.0 1.6244554382337738E-4 0.0 8.860666026729675E-5 0.0 14-15 0.0 2.8797164586871445E-4 0.0 1.0337443697851288E-4 0.0 16-17 0.0 2.953555342243225E-4 0.0 1.1075832533412094E-4 0.0 18-19 0.0 3.1012331093553864E-4 0.0 1.2552610204533707E-4 1.4767776711216126E-5 20-21 0.0 3.2489108764675477E-4 0.0 1.993649856014177E-4 1.4767776711216126E-5 22-23 0.0 3.54426641069187E-4 0.0 4.72568854758916E-4 1.4767776711216126E-5 24-25 0.0 4.208816362696596E-4 0.0 0.0012700287971645868 1.4767776711216126E-5 26-27 0.0 4.72568854758916E-4 0.0 0.004164513032562947 1.4767776711216126E-5 28-29 0.0 4.72568854758916E-4 0.0 0.012914420733958503 1.4767776711216126E-5 30-31 0.0 5.390238499593886E-4 0.0 0.01453149228383667 1.4767776711216126E-5 32-33 0.0 5.464077383149967E-4 0.0 0.01838588200546408 1.4767776711216126E-5 34-35 0.0 6.793177287159418E-4 0.0 0.023325703315365872 2.953555342243225E-5 36-37 0.0 8.122277191168869E-4 0.0 0.03142582884146792 2.953555342243225E-5 38-39 0.0 8.26995495828103E-4 0.0 0.04899948312781511 2.953555342243225E-5 40-41 0.0 8.712988259617514E-4 0.0 0.06680942184154176 2.953555342243225E-5 42-43 0.0 8.860666026729675E-4 0.0 0.07823229712766742 3.6919441778040314E-5 44-45 0.0 9.525215978734401E-4 0.0 0.09353171380048733 4.430333013364838E-5 46-47 0.0 0.0010042088163626966 0.0 0.10877205936646238 4.430333013364838E-5 48-49 0.0 0.0010042088163626966 0.0 0.12255777892638263 5.90711068448645E-5 50-51 0.0 0.001166654360186074 0.0 0.13582662630141035 5.90711068448645E-5 52-53 0.0 0.00118142213689729 0.0 0.1685815550468877 5.90711068448645E-5 54-55 0.0 0.00118142213689729 0.0 0.20725097836520712 5.90711068448645E-5 56-57 0.0 0.00118142213689729 0.0 0.2467843166211327 5.90711068448645E-5 58-59 0.0 0.0012035738019641144 0.0 0.2704570626892121 5.90711068448645E-5 60-61 0.0 0.0012331093553865466 0.0 0.28707819537768586 5.90711068448645E-5 62-63 0.0 0.001284796573875803 0.0 0.2999335450047995 5.90711068448645E-5 64-65 0.0 0.0014324743409879642 0.0 0.30552314848999484 5.90711068448645E-5 66-67 0.0 0.0014472421176991803 0.0 0.3116000886066602 5.90711068448645E-5 68-69 0.0 0.0014620098944103964 0.0 0.31741859263087946 5.90711068448645E-5 70-71 0.0 0.0014767776711216126 0.0 0.32235841394078124 5.90711068448645E-5 72-73 0.0 0.0014841615594772205 0.0 0.3259543675699623 5.90711068448645E-5 74-75 0.0 0.001535848777966477 0.0 0.3287750129218046 5.90711068448645E-5 76-77 0.0 0.0015801521081001255 0.0 0.331839326589382 5.90711068448645E-5 78-79 0.0 0.0016096876615225577 0.0 0.333892047552241 5.90711068448645E-5 80-81 0.0 0.0016096876615225577 0.0 0.3345935169460238 5.90711068448645E-5 82-83 0.0 0.0016096876615225577 0.0 0.33519161190282803 5.90711068448645E-5 84-85 0.0 0.0016096876615225577 0.0 0.33539097688842945 5.90711068448645E-5 86-87 0.0 0.0016244554382337738 0.0 0.3354869674370523 5.90711068448645E-5 88 0.0 0.0017425976519235028 0.0 0.33549435132540795 5.90711068448645E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10285 0.0 51.60264 1 GTATCAA 18635 0.0 36.90392 1 CTTATAC 7890 0.0 31.939514 1 TCAACGC 22670 0.0 29.792517 4 ATCAACG 22805 0.0 29.690783 3 TATCAAC 23310 0.0 29.22955 2 CAACGCA 23335 0.0 28.921465 5 AACGCAG 23835 0.0 28.364386 6 TATACAC 10895 0.0 25.933783 3 ACGCAGA 26895 0.0 25.137203 7 GTGGTAT 4570 0.0 24.879261 1 CGCAGAG 27220 0.0 24.83707 8 TTATACA 11140 0.0 24.182844 2 TGGTATC 4340 0.0 23.94943 2 GCAGAGT 31385 0.0 21.473455 9 GAGTACT 18875 0.0 20.56053 12-13 TACACAT 13740 0.0 20.437565 5 ACATCTC 12800 0.0 20.311907 8 TACATGG 22145 0.0 20.15389 2 GTACATG 22655 0.0 20.14963 1 >>END_MODULE