##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138894_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6662070 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.80943370453928 33.0 33.0 33.0 33.0 33.0 2 32.80164273266417 33.0 33.0 33.0 33.0 33.0 3 32.804154414468776 33.0 33.0 33.0 33.0 33.0 4 36.74988539598053 37.0 37.0 37.0 37.0 37.0 5 36.76206869636614 37.0 37.0 37.0 37.0 37.0 6 36.76689152170422 37.0 37.0 37.0 37.0 37.0 7 36.75381360448029 37.0 37.0 37.0 37.0 37.0 8 36.755100741961584 37.0 37.0 37.0 37.0 37.0 9 36.7421571673669 37.0 37.0 37.0 37.0 37.0 10-11 36.71661142858001 37.0 37.0 37.0 37.0 37.0 12-13 36.7015282787482 37.0 37.0 37.0 37.0 37.0 14-15 38.9688989308128 40.0 40.0 40.0 37.0 40.0 16-17 38.92387426130317 40.0 40.0 40.0 37.0 40.0 18-19 38.959731810083056 40.0 40.0 40.0 37.0 40.0 20-21 38.9889463978182 40.0 40.0 40.0 37.0 40.0 22-23 39.02293545730699 40.0 40.0 40.0 37.0 40.0 24-25 39.01419113548391 40.0 40.0 40.0 37.0 40.0 26-27 38.932452385655345 40.0 40.0 40.0 37.0 40.0 28-29 38.863793887487546 40.0 40.0 40.0 37.0 40.0 30-31 38.79761554455865 40.0 37.0 40.0 37.0 40.0 32-33 38.76000914842991 40.0 37.0 40.0 37.0 40.0 34-35 38.73750422286704 40.0 37.0 40.0 37.0 40.0 36-37 38.70626795243465 40.0 37.0 40.0 37.0 40.0 38-39 38.666532798786676 40.0 37.0 40.0 37.0 40.0 40-41 38.62176799435541 40.0 37.0 40.0 37.0 40.0 42-43 38.55647935602983 40.0 37.0 40.0 37.0 40.0 44-45 38.47052180030012 40.0 37.0 40.0 37.0 40.0 46-47 38.385479810419 40.0 37.0 40.0 37.0 40.0 48-49 38.33797203959064 40.0 37.0 40.0 37.0 40.0 50-51 38.299077316799 40.0 37.0 40.0 37.0 40.0 52-53 38.23936198601302 40.0 37.0 40.0 37.0 40.0 54-55 38.16753894065489 40.0 37.0 40.0 37.0 40.0 56-57 38.06565951536169 40.0 37.0 40.0 37.0 40.0 58-59 37.93453289851816 40.0 37.0 40.0 35.0 40.0 60-61 37.76992966846382 40.0 37.0 40.0 33.0 40.0 62-63 37.580929903006734 38.5 37.0 40.0 33.0 40.0 64-65 37.35080073847318 37.0 37.0 40.0 33.0 40.0 66-67 37.11112875402239 37.0 37.0 40.0 33.0 40.0 68-69 36.83952238464982 37.0 37.0 40.0 33.0 40.0 70-71 36.57775916306377 37.0 37.0 40.0 33.0 40.0 72-73 36.33485554652695 37.0 37.0 37.0 33.0 40.0 74-75 36.07135724324792 37.0 37.0 37.0 33.0 40.0 76-77 34.414025781572846 35.0 33.0 37.0 30.0 37.0 78-79 35.66725415137101 37.0 35.0 37.0 33.0 37.0 80-81 35.798048263936195 37.0 37.0 37.0 33.0 37.0 82-83 35.7105430660509 37.0 37.0 37.0 33.0 37.0 84-85 35.60438272626722 37.0 37.0 37.0 33.0 37.0 86-87 35.51279568379332 37.0 35.0 37.0 33.0 37.0 88-89 35.41840235750272 37.0 33.0 37.0 33.0 37.0 90-91 35.358511045059444 37.0 33.0 37.0 33.0 37.0 92-93 35.288160639358594 37.0 33.0 37.0 33.0 37.0 94-95 35.24669314818398 37.0 33.0 37.0 33.0 37.0 96-97 35.209591597715324 37.0 33.0 37.0 33.0 37.0 98-99 35.17011352845244 37.0 33.0 37.0 33.0 37.0 100 35.10059190749384 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 7.0 20 25.0 21 93.0 22 370.0 23 1094.0 24 2791.0 25 5753.0 26 10563.0 27 17536.0 28 27322.0 29 39641.0 30 55958.0 31 76297.0 32 104076.0 33 142643.0 34 206137.0 35 316530.0 36 610468.0 37 1871695.0 38 3037629.0 39 135439.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.99151314831576 20.03111645479558 14.396351284210462 23.58101911267819 2 14.656480643403627 21.143983776814114 41.598467143095164 22.601068436687097 3 17.926745869300646 26.244898731144744 30.843891116091882 24.98446428346273 4 12.465784868433596 18.208177223159748 39.13925815634842 30.186779752058236 5 13.301086873140688 37.69073872275855 35.52517390105358 13.483000503047183 6 29.63734995279245 37.972672157452564 18.901737748177368 13.488240141577618 7 26.217902243596956 33.03009424998537 23.175184289567657 17.57681921685002 8 24.443829020109366 36.25686911125221 21.31559710420335 17.98370476443508 9 25.84046700199788 16.753471518612084 21.187633873555818 36.21842760583422 10-11 24.047608325940736 26.74274662379711 29.02583581379361 20.183809236468544 12-13 25.09931597836708 24.449150189055356 29.000048033118837 21.451485799458727 14-15 22.291292346072616 25.748401022505018 26.90286202336511 25.057444608057256 16-17 21.60119152155411 28.8199463530104 27.504041536639512 22.074820588795973 18-19 21.640285977181268 27.85920141937866 29.40696360140317 21.093549002036905 20-21 22.57759799673698 26.99862097040633 29.295785261060193 21.127995771796495 22-23 22.264725410837052 26.889469141979518 29.149026016965347 21.696779430218086 24-25 21.966736397856845 27.034606996809053 29.233861113578303 21.7647954917558 26-27 21.866109361915864 27.227114584206003 29.140784692201954 21.765991361676182 28-29 21.820331749623872 27.35051976533921 29.13520620943839 21.69394227559853 30-31 22.16316854547432 27.139509230576426 29.032058719811467 21.665263504137794 32-33 21.91111330308113 27.31522182912558 28.93939620174832 21.83426866604497 34-35 22.031818404893503 27.365019959947773 28.92411983364177 21.679041801516956 36-37 22.051625873367826 27.29845838319586 28.863661405785702 21.78625433765061 38-39 21.894383783180523 27.4659057775643 28.88934161719184 21.75036882206334 40-41 22.198788097286286 27.308492870377904 28.700379917365936 21.792339114969877 42-43 22.090150856721248 27.422214829930507 28.47008767431849 22.017546639029757 44-45 22.196112307638185 27.541153799548923 28.254689582657438 22.00804431015545 46-47 22.263657422109144 27.556401217019438 27.944808819314826 22.235132541556588 48-49 22.197751964607743 27.709519267934564 27.899914997632617 22.192813769825076 50-51 22.241742270978087 27.827319591776956 27.720435455082427 22.210502682162534 52-53 22.423204039011335 27.71082138729496 27.57064822887731 22.2953263448164 54-55 22.387682792368665 27.60378648152552 27.662148583748227 22.346382142357584 56-57 22.36874325666023 27.715445943871337 27.6224676249609 22.293343174507534 58-59 22.3219038753046 27.751900122305194 27.64070753354742 22.285488468842786 60-61 22.393076313633863 27.709953134861486 27.652370449448764 22.24460010205589 62-63 22.361030890791824 27.75568014892955 27.600107761923365 22.28318119835526 64-65 22.334164055070254 27.731172841721026 27.560987653308484 22.373675449900237 66-67 22.40969730181511 27.774155344141167 27.40641554373141 22.409731810312312 68-69 22.36417501158722 27.754433866377497 27.47064933588964 22.41074178614564 70-71 22.36694292950503 27.519931581380124 27.52973259094575 22.583392898169098 72-73 22.40806662782914 27.532929750458806 27.47396171597336 22.58504190573869 74-75 22.31305434615655 27.65412763338438 27.458738405729953 22.57407961472911 76-77 22.421782589573823 27.595359161448783 27.361784645131255 22.621073603846146 78-79 22.443673302031648 27.59820074655656 27.33207157516534 22.626054376246447 80-81 22.44855122773866 27.57937955069863 27.31394436226053 22.658124859302184 82-83 22.495153769556804 27.532314382076407 27.419804307370356 22.55272754099644 84-85 22.585113345674994 27.517466372586135 27.35724698387523 22.540173297863646 86-87 22.435935853447802 27.50303786779522 27.420065563391454 22.640960715365523 88-89 22.521586062046307 27.44015191268326 27.41950441733915 22.618757607931283 90-91 22.56542899270295 27.403104887034708 27.45587183217334 22.575594288089 92-93 22.555999756316545 27.36800895636568 27.469437201075802 22.606554086241974 94-95 22.473292893249713 27.399002913060304 27.49040913685221 22.637295056837768 96-97 22.54272746045948 27.525148673060585 27.548216537933932 22.383907328546 98-99 23.661142936621754 29.403542871042067 27.78914696457644 19.14616722775974 100 22.562166470083422 30.396585291601863 21.542998255260194 25.498249983054517 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1193.0 1 1104.0 2 1608.5 3 2394.0 4 3400.5 5 5739.0 6 7744.0 7 9110.5 8 10119.0 9 10308.0 10 9732.0 11 9013.5 12 9950.0 13 13028.0 14 20133.0 15 30035.0 16 38313.5 17 43403.0 18 44698.0 19 42487.0 20 38233.0 21 33359.5 22 30280.5 23 30812.5 24 34838.0 25 42381.5 26 53268.0 27 65861.5 28 78527.0 29 92849.5 30 107188.5 31 120696.5 32 136394.5 33 152460.5 34 168266.5 35 183502.0 36 199944.0 37 214961.0 38 226177.0 39 235979.5 40 246422.0 41 255669.0 42 262830.5 43 270143.5 44 274449.5 45 277838.0 46 279702.0 47 280799.0 48 281343.0 49 277753.0 50 271431.5 51 262782.0 52 251119.0 53 236669.5 54 221991.5 55 206416.0 56 189297.5 57 170846.0 58 152120.0 59 133599.5 60 112918.0 61 92460.5 62 73480.0 63 56901.0 64 43153.0 65 32160.0 66 24295.5 67 18538.0 68 14097.5 69 10111.0 70 7185.0 71 5104.0 72 3386.0 73 2255.0 74 1495.5 75 1015.5 76 687.0 77 433.0 78 273.5 79 185.0 80 126.5 81 86.0 82 55.0 83 33.0 84 25.0 85 22.0 86 18.0 87 16.5 88 13.5 89 8.0 90 6.0 91 7.5 92 6.5 93 5.0 94 3.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.0020699272148145E-5 4 0.013644407819191334 5 0.010011903207261407 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.00882855111389514 26-27 0.05174905186815504 28-29 0.08154635448953101 30-31 0.06955397002958771 32-33 0.03234120468499666 34-35 0.004378134071017418 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.76053593850183E-4 56-57 8.574676112222062E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.7611873925400506E-5 72-73 0.01546025939433144 74-75 0.026587074961714252 76-77 0.0012983255141754903 78-79 0.0 80-81 9.279327523422646E-6 82-83 0.0133075878120139 84-85 0.05067784464279665 86-87 0.039381682621272444 88-89 0.01022549152829691 90-91 3.9400354189483985E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 79.0 20-21 377.0 22-23 764.0 24-25 2141.0 26-27 2412.0 28-29 5704.0 30-31 14008.0 32-33 18473.0 34-35 25285.0 36-37 36703.0 38-39 43154.0 40-41 46047.0 42-43 55097.0 44-45 65823.0 46-47 64013.0 48-49 55927.0 50-51 49387.0 52-53 47975.0 54-55 50997.0 56-57 53266.0 58-59 53597.0 60-61 52222.0 62-63 52326.0 64-65 55921.0 66-67 58738.0 68-69 59008.0 70-71 57751.0 72-73 55994.0 74-75 57410.0 76-77 58050.0 78-79 59815.0 80-81 60941.0 82-83 59315.0 84-85 59980.0 86-87 62866.0 88-89 66529.0 90-91 69985.0 92-93 72153.0 94-95 79113.0 96-97 214735.0 98-99 394316.0 100-101 4263673.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.87919192528844 #Duplication Level Percentage of deduplicated Percentage of total 1 91.34742608940952 80.2753798919232 2 6.294564931037947 11.063225593217474 3 1.3798814588287096 3.6378860266366546 4 0.48916428079355273 1.7194944685940923 5 0.20555003771774555 0.903178560742402 6 0.09540499473436982 0.5030468305735691 7 0.06129539112960827 0.37706126088501274 8 0.03288648011226877 0.23120298380265988 9 0.022566066493434445 0.17847789195378116 >10 0.06989676684794946 0.9236787465388338 >50 8.860199711362377E-4 0.05340496015693788 >100 4.047888262942386E-4 0.07921506877465724 >500 4.84627366888367E-5 0.029854651390727325 >1k 2.4231360780267944E-5 0.024893064810008664 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.0020699272148145E-5 0.0 1.5010349636074072E-5 0.0 5 0.0 3.0020699272148145E-5 0.0 1.5010349636074072E-5 0.0 6 0.0 3.0020699272148145E-5 0.0 1.5010349636074072E-5 1.5010349636074072E-5 7 0.0 4.503104890822222E-5 0.0 1.5010349636074072E-5 1.5010349636074072E-5 8 0.0 4.503104890822222E-5 0.0 1.5010349636074072E-5 1.5010349636074072E-5 9 0.0 1.5010349636074074E-4 0.0 3.0020699272148145E-5 1.5010349636074072E-5 10-11 0.0 1.5010349636074074E-4 0.0 4.5031048908222215E-5 1.5010349636074072E-5 12-13 0.0 1.5010349636074074E-4 0.0 7.505174818037037E-5 1.5010349636074072E-5 14-15 0.0 2.1765006972307405E-4 0.0 1.050724474525185E-4 3.0020699272148145E-5 16-17 0.0 2.251552445411111E-4 0.0 1.5010349636074074E-4 4.503104890822222E-5 18-19 0.0 3.002069927214814E-4 0.0 2.6268111863129626E-4 5.253622372625925E-5 20-21 0.0 3.752587409018518E-4 0.0 3.227225171755926E-4 6.004139854429629E-5 22-23 0.0 4.202897898100741E-4 0.0 5.628881113527778E-4 6.754657336233333E-5 24-25 0.0 4.4280531426418515E-4 0.0 0.0015535711873336665 8.25569229984074E-5 26-27 0.0 4.5781566390025924E-4 0.0 0.004495599716004185 9.006209781644444E-5 28-29 0.0 4.653208387182963E-4 0.0 0.013531830196920776 9.006209781644444E-5 30-31 0.0 5.328674120806296E-4 0.0 0.014680121944080443 9.006209781644444E-5 32-33 0.0 5.478777617167036E-4 0.0 0.017021736487308 9.006209781644444E-5 34-35 0.0 6.22929509897074E-4 0.0 0.019716094246983295 9.006209781644444E-5 36-37 0.0 6.904760832594074E-4 0.0 0.02421169396298748 9.006209781644444E-5 38-39 0.0 7.204967825315556E-4 0.0 0.03495159912759848 9.006209781644444E-5 40-41 0.0 7.655278314397777E-4 0.0 0.046854806389005216 9.006209781644444E-5 42-43 0.0 7.805381810758518E-4 0.0 0.05528311770966081 9.756727263448149E-5 44-45 0.0 8.630951040742592E-4 0.0 0.06537757783992063 1.1257762227055555E-4 46-47 0.0 9.306416774365926E-4 0.0 0.07580977083699211 1.275879719066296E-4 48-49 0.0 9.381468522546297E-4 0.0 0.08569408607234688 2.1014489490503704E-4 50-51 0.0 0.001028208950071074 0.0 0.09543580298615895 2.1014489490503704E-4 52-53 0.0 0.001035714124889111 0.0 0.11721582030810243 2.4016559417718518E-4 54-55 0.0 0.0010657348241612592 0.0 0.14346892182159598 2.701862934493333E-4 56-57 0.0 0.0011257762227055554 0.0 0.17111798585124444 2.7769146826737035E-4 58-59 0.0 0.0011332813975235925 0.0 0.19592258862485684 2.851966430854074E-4 60-61 0.0 0.0011482917471596667 0.0 0.20773573378844715 2.851966430854074E-4 62-63 0.0 0.0011933227960678888 0.0 0.22117750188755148 2.851966430854074E-4 64-65 0.0 0.0012908900687023702 0.0 0.2281122834194177 2.851966430854074E-4 66-67 0.0 0.0012908900687023702 0.0 0.2339062783789423 2.851966430854074E-4 68-69 0.0 0.0013584366420647037 0.0 0.24008303725418678 2.851966430854074E-4 70-71 0.0 0.0013809521665188148 0.0 0.24561435109508006 3.302276919936296E-4 72-73 0.0 0.0013809521665188148 0.0 0.25004240423772195 4.05279440174E-4 74-75 0.0 0.001418478040609 0.0 0.25343474325547466 4.05279440174E-4 76-77 0.0 0.0015235504880615185 0.0 0.25704473234295044 4.05279440174E-4 78-79 0.0 0.0015610763621517036 0.0 0.25937884171135994 4.05279440174E-4 80-81 0.0 0.0015760867117877776 0.0 0.2601518747176178 4.05279440174E-4 82-83 0.0 0.0015760867117877776 0.0 0.2607597938778788 4.277949646281111E-4 84-85 0.0 0.0015910970614238518 0.0 0.2610825163950544 4.353001394461481E-4 86-87 0.0 0.0015986022362418886 0.0 0.26126264059068727 4.353001394461481E-4 88 1.5010349636074072E-5 0.0018162523059649628 0.0 0.2612851561151414 4.353001394461481E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9760 0.0 53.078964 1 GTATCAA 18225 0.0 37.45913 1 TCAACGC 22230 0.0 30.063084 4 ATCAACG 22305 0.0 29.924044 3 TATCAAC 22880 0.0 29.486494 2 CAACGCA 22935 0.0 29.171064 5 AACGCAG 23510 0.0 28.472828 6 ACGCAGA 26695 0.0 25.091564 7 CGCAGAG 27050 0.0 24.762266 8 GTGGTAT 4465 0.0 22.655169 1 TGGTATC 4310 0.0 22.291508 2 GCAGAGT 31290 0.0 21.258066 9 GAGTACT 18830 0.0 20.08926 12-13 CAGAGTA 30530 0.0 19.22323 10-11 GTACATG 20750 0.0 18.969492 1 AGAGTAC 28400 0.0 18.966482 10-11 TACATGG 20655 0.0 18.421515 2 GTACTTT 20815 0.0 18.163578 14-15 ACATGGG 20775 0.0 17.765045 3 AGTACTT 20325 0.0 17.445774 12-13 >>END_MODULE