##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138892_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6365949 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.843074457555346 33.0 33.0 33.0 33.0 33.0 2 32.83889409104597 33.0 33.0 33.0 33.0 33.0 3 32.83700827637796 33.0 33.0 33.0 33.0 33.0 4 36.78776267293376 37.0 37.0 37.0 37.0 37.0 5 36.79763677026002 37.0 37.0 37.0 37.0 37.0 6 36.81029474160098 37.0 37.0 37.0 37.0 37.0 7 36.79551171396441 37.0 37.0 37.0 37.0 37.0 8 36.792905503955495 37.0 37.0 37.0 37.0 37.0 9 36.79224558663602 37.0 37.0 37.0 37.0 37.0 10-11 36.77157113574111 37.0 37.0 37.0 37.0 37.0 12-13 36.75977917824977 37.0 37.0 37.0 37.0 37.0 14-15 39.1087683863003 40.0 40.0 40.0 37.0 40.0 16-17 39.06623678574868 40.0 40.0 40.0 37.0 40.0 18-19 39.05312656447609 40.0 40.0 40.0 37.0 40.0 20-21 39.100572289777745 40.0 40.0 40.0 37.0 40.0 22-23 39.13068709842533 40.0 40.0 40.0 37.0 40.0 24-25 39.134141658753165 40.0 40.0 40.0 37.0 40.0 26-27 38.86943437682659 40.0 40.0 40.0 37.0 40.0 28-29 38.86953762187655 40.0 40.0 40.0 37.0 40.0 30-31 38.88268605953805 40.0 40.0 40.0 37.0 40.0 32-33 38.87274989640714 40.0 40.0 40.0 37.0 40.0 34-35 38.85532747683776 40.0 40.0 40.0 37.0 40.0 36-37 38.81962212843829 40.0 37.0 40.0 37.0 40.0 38-39 38.77583406707598 40.0 37.0 40.0 37.0 40.0 40-41 38.73464260837817 40.0 37.0 40.0 37.0 40.0 42-43 38.67904246361527 40.0 37.0 40.0 37.0 40.0 44-45 38.60725582371735 40.0 37.0 40.0 37.0 40.0 46-47 38.52906091753905 40.0 37.0 40.0 37.0 40.0 48-49 38.4737630170443 40.0 37.0 40.0 37.0 40.0 50-51 38.41511299742912 40.0 37.0 40.0 37.0 40.0 52-53 38.35314749309066 40.0 37.0 40.0 37.0 40.0 54-55 38.28009655734378 40.0 37.0 40.0 37.0 40.0 56-57 38.17325714071696 40.0 37.0 40.0 37.0 40.0 58-59 38.04236243329218 40.0 37.0 40.0 37.0 40.0 60-61 37.8811857879329 40.0 37.0 40.0 35.0 40.0 62-63 37.70003586018635 38.5 37.0 40.0 33.0 40.0 64-65 37.48854886545716 37.0 37.0 40.0 33.0 40.0 66-67 37.26109726012645 37.0 37.0 40.0 33.0 40.0 68-69 37.00463123754484 37.0 37.0 40.0 33.0 40.0 70-71 36.75614592170773 37.0 37.0 40.0 33.0 40.0 72-73 36.51831367178005 37.0 37.0 37.0 33.0 40.0 74-75 36.260535616894586 37.0 37.0 37.0 33.0 40.0 76-77 34.55929704053497 35.0 33.0 37.0 30.0 37.0 78-79 31.45266208362237 37.0 33.0 37.0 10.5 37.0 80-81 34.532861204761076 37.0 33.0 37.0 30.0 37.0 82-83 35.56940336288583 37.0 35.0 37.0 33.0 37.0 84-85 35.69287434035095 37.0 37.0 37.0 33.0 37.0 86-87 35.65885647245061 37.0 37.0 37.0 33.0 37.0 88-89 35.582115917329034 37.0 37.0 37.0 33.0 37.0 90-91 35.5155714366458 37.0 35.0 37.0 33.0 37.0 92-93 35.450320682170016 37.0 33.0 37.0 33.0 37.0 94-95 35.404629308084566 37.0 33.0 37.0 33.0 37.0 96-97 35.380072744435665 37.0 33.0 37.0 33.0 37.0 98-99 35.33924701031681 37.0 33.0 37.0 33.0 37.0 100 35.286135060524984 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 28.0 21 97.0 22 317.0 23 919.0 24 2318.0 25 4920.0 26 8932.0 27 15160.0 28 23211.0 29 33893.0 30 47008.0 31 65138.0 32 89570.0 33 125182.0 34 184250.0 35 300375.0 36 657579.0 37 2012796.0 38 2660584.0 39 133669.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.794491284802945 20.04705032980943 14.530826432948174 23.627631952439458 2 14.585272360805906 20.850968174580096 41.906430604455046 22.657328860158948 3 18.024004987804602 26.06575601636651 30.858223790502155 25.052015205326732 4 12.426659619244365 18.314441569819603 38.640949441134595 30.61794936980144 5 13.348274640391333 37.51191887388735 35.48653122081162 13.65327526490969 6 29.671648327688455 37.80199935626251 18.741950336077153 13.784401979971877 7 26.24213609000009 33.027031790546864 22.68736365936956 18.043468460083485 8 24.464616351780386 36.3345512193076 21.16601939475167 18.034813034160344 9 25.611923689618 16.88486665538791 20.995785545878547 36.50742410911555 10-11 24.0867779493678 26.76689681302819 28.76308779727893 20.38323744032508 12-13 25.181579368606315 24.340416487785248 28.769716816769975 21.708287326838466 14-15 22.33744725256203 25.70798949221868 26.571568512408756 25.38299474281054 16-17 21.702537987659028 28.978915790874225 27.207522397681792 22.111023823784954 18-19 21.855005435953068 27.76448570354554 29.074117621740292 21.3063912387611 20-21 22.595918778984405 26.905727946403722 29.077586367371154 21.420766907240715 22-23 22.229786647085568 26.969703967843262 29.00561039959958 21.79489898547159 24-25 22.10154911488971 27.11521893117319 29.03089468839537 21.75233726554173 26-27 22.074762826046115 27.24253366886008 28.989894486165106 21.6928090189287 28-29 21.812008564334313 27.24440111327216 29.08245245724818 21.86113786514534 30-31 22.154623987907645 27.116192035820706 29.040756156822123 21.688427819449522 32-33 21.766774271339806 27.153249236183115 29.169907371045095 21.910069121431984 34-35 21.843241754793073 27.309159355239927 28.990497948468363 21.85710094149864 36-37 21.967635169924023 27.316363583183872 28.97575220864746 21.740249038244645 38-39 21.855441589879153 27.34156051292789 28.956734751051105 21.84626314614185 40-41 22.04897283641488 27.216774293981743 28.861388676904028 21.87286419269935 42-43 22.17079848886657 27.250088561344572 28.697856746542012 21.881256203246846 44-45 22.056337150167092 27.53449315536259 28.424185986239635 21.984983708230686 46-47 22.353958500137963 27.370232129220895 27.926777513939673 22.34903185670147 48-49 22.19727988370024 27.546786848430678 27.932452181438585 22.3234810864305 50-51 22.122806550769404 27.758838207365592 27.873539314282215 22.244815927582792 52-53 22.256548014244775 27.688800508060574 27.932654985675363 22.12199649201929 54-55 22.236599733813087 27.64461540422657 27.761933047070187 22.35685181489016 56-57 22.427139964124603 27.85095480701003 27.486011529158688 22.235893699706676 58-59 22.102902284770327 28.027499539678814 27.813176784336065 22.056421391214798 60-61 22.398994037899183 28.12879207568188 27.449347128449936 22.022866757969005 62-63 22.167553617848693 28.33076524707406 27.391768464220473 22.109912670856783 64-65 22.19874151418185 28.193489167135127 27.39542017655112 22.2123491421319 66-67 22.31418839107813 28.0821748235063 27.325297153383627 22.27833963203194 68-69 22.3268219282633 27.927314454211384 27.45468067023662 22.2911829472887 70-71 22.35721764499892 27.645001699026 27.51659480903309 22.48118584694199 72-73 22.39077536472932 27.722029543273695 27.457980627929075 22.429214464067908 74-75 22.2685781914767 27.873541067024288 27.35489646379624 22.50298427770277 76-77 22.357755792195718 27.804589812113583 27.354836174798635 22.48281822089206 78-79 22.876944542413792 27.76175200739787 26.957212290702596 22.404091159485738 80-81 22.389949386611598 27.826180225554225 27.31872263218819 22.465147755645983 82-83 22.424703428404623 27.792861745745867 27.378129669276547 22.404305156572963 84-85 22.492207961431358 27.771462557613475 27.34466587637238 22.391663604582778 86-87 22.32294033287886 27.791982944160644 27.41870571387086 22.466371009089634 88-89 22.417477549240637 27.79362190968378 27.340790326817448 22.448110214258136 90-91 22.443598236285133 27.82308672282694 27.370081706027943 22.363233334859984 92-93 22.44404461483113 27.784385973319292 27.371868947961524 22.39970046388805 94-95 22.322721593795467 27.856879889941304 27.35227922760094 22.468119288662287 96-97 22.419964879103066 27.944108887645292 27.4545926254693 22.181333607782346 98-99 23.546975515319488 29.856809740130608 27.647614775783147 18.948599968766757 100 22.427509081480096 30.8797771135771 21.482500768176017 25.21021303676679 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2023.0 1 1791.5 2 2121.5 3 2846.0 4 3754.0 5 5880.0 6 7604.5 7 8819.0 8 9929.5 9 10198.0 10 9686.5 11 9190.0 12 10080.0 13 13060.0 14 20073.0 15 29649.0 16 37711.5 17 42808.5 18 44115.5 19 41826.5 20 37847.5 21 33438.0 22 30557.0 23 30926.0 24 34540.0 25 41828.0 26 52427.0 27 64249.5 28 75815.5 29 88904.0 30 102293.0 31 115516.0 32 130370.5 33 144669.0 34 158750.5 35 172379.0 36 187818.0 37 202016.0 38 210607.0 39 219691.0 40 230846.0 41 239126.0 42 244696.0 43 251198.0 44 256890.0 45 261519.5 46 266699.0 47 271881.5 48 277675.5 49 275162.5 50 265280.5 51 255390.5 52 242683.0 53 227284.5 54 211263.0 55 195494.5 56 179826.0 57 163473.5 58 146095.0 59 128147.0 60 108187.0 61 88360.0 62 70597.5 63 55111.5 64 41943.0 65 31652.5 66 23947.5 67 18266.0 68 14000.5 69 10199.0 70 7183.0 71 5177.0 72 3729.5 73 2565.5 74 1726.5 75 1176.5 76 784.0 77 489.0 78 324.0 79 212.5 80 143.0 81 100.5 82 65.0 83 38.5 84 22.0 85 17.0 86 14.0 87 11.0 88 8.5 89 5.5 90 3.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.4558869384596075E-4 4 0.022730310908868418 5 0.016399754380690138 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008571628804318278 26-27 0.05291016518864808 28-29 0.08578849051734022 30-31 0.07588991734069259 32-33 0.036179649913555496 34-35 0.003973178355105744 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.6521091539686247E-4 56-57 6.042499488545579E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.012462146930396382 74-75 0.02657652935459834 76-77 9.250376213754261E-4 78-79 4.907659468487351 80-81 0.0 82-83 0.012538348908912878 84-85 0.0492639220996226 86-87 0.03957738221362532 88-89 0.009012377404264802 90-91 3.0806878354419786E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 77.0 20-21 349.0 22-23 934.0 24-25 2172.0 26-27 3185.0 28-29 5588.0 30-31 13226.0 32-33 17767.0 34-35 23782.0 36-37 34765.0 38-39 41743.0 40-41 43702.0 42-43 51619.0 44-45 62569.0 46-47 60795.0 48-49 52967.0 50-51 48076.0 52-53 45895.0 54-55 50961.0 56-57 54079.0 58-59 55084.0 60-61 53652.0 62-63 54977.0 64-65 58162.0 66-67 62888.0 68-69 57764.0 70-71 52575.0 72-73 49918.0 74-75 50944.0 76-77 53004.0 78-79 52291.0 80-81 53076.0 82-83 51663.0 84-85 51048.0 86-87 53989.0 88-89 56928.0 90-91 58807.0 92-93 60448.0 94-95 71012.0 96-97 199498.0 98-99 377075.0 100-101 4116895.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.78174349447102 #Duplication Level Percentage of deduplicated Percentage of total 1 91.3558748699846 80.19377974549978 2 6.316691549120377 11.089803945971553 3 1.3576804870380428 3.575386807818658 4 0.45891775681814895 1.6113840325627509 5 0.20233362054797124 0.8880598989624822 6 0.10968932080929683 0.5777231894018661 7 0.05687385555985521 0.34947403402077626 8 0.03992162242665543 0.28035116957918305 9 0.02598368601957091 0.20528039350897614 >10 0.07425195871578236 0.9898428740887468 >50 0.0010656213164783005 0.061534533147625234 >100 6.386513419576357E-4 0.11562263307638672 >500 5.133353948263153E-5 0.03219642332581726 >1k 2.566676176063153E-5 0.02956031903533556 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5708576992998217E-5 0.0 0.0 0.0 3 0.0 1.5708576992998217E-5 0.0 3.1417153985996433E-5 0.0 4 0.0 4.712573097899465E-5 0.0 6.283430797199287E-5 0.0 5 0.0 4.712573097899465E-5 0.0 6.283430797199287E-5 0.0 6 3.1417153985996433E-5 4.712573097899465E-5 0.0 6.283430797199287E-5 0.0 7 3.1417153985996433E-5 4.712573097899465E-5 0.0 6.283430797199287E-5 0.0 8 3.1417153985996433E-5 6.283430797199287E-5 0.0 6.283430797199287E-5 0.0 9 4.712573097899465E-5 1.099600389509875E-4 0.0 1.2566861594398573E-4 0.0 10-11 5.498001947549376E-5 1.099600389509875E-4 0.0 1.4137719293698395E-4 0.0 12-13 6.283430797199287E-5 1.099600389509875E-4 0.0 1.7279434692298037E-4 0.0 14-15 6.283430797199287E-5 2.3562865489497323E-4 0.0 1.7279434692298037E-4 0.0 16-17 1.021057504544884E-4 2.4348294339147236E-4 0.0 2.3562865489497325E-4 0.0 18-19 1.099600389509875E-4 2.670458088809697E-4 0.0 2.670458088809697E-4 1.5708576992998217E-5 20-21 1.099600389509875E-4 2.827543858739679E-4 0.0 3.141715398599643E-4 1.5708576992998217E-5 22-23 1.099600389509875E-4 3.6915155933545807E-4 0.0 3.141715398599643E-4 3.927144248249554E-5 24-25 1.099600389509875E-4 4.005687133214545E-4 0.0 3.5344298234245985E-4 4.712573097899465E-5 26-27 1.099600389509875E-4 4.084230018179536E-4 0.0 3.927144248249554E-4 4.712573097899465E-5 28-29 1.099600389509875E-4 4.084230018179536E-4 0.0 5.969259257339322E-4 4.712573097899465E-5 30-31 1.099600389509875E-4 4.319858673074509E-4 0.0 0.001091746101013376 4.712573097899465E-5 32-33 1.099600389509875E-4 4.5554873279694824E-4 0.0 0.0024348294339147235 6.283430797199287E-5 34-35 1.099600389509875E-4 5.340916177619394E-4 0.0 0.004233461499613019 6.283430797199287E-5 36-37 1.099600389509875E-4 6.126345027269304E-4 0.0 0.006629019491045247 6.283430797199287E-5 38-39 1.099600389509875E-4 6.283430797199286E-4 0.0 0.010359806526882323 6.283430797199287E-5 40-41 1.099600389509875E-4 6.597602337059251E-4 0.0 0.01399634210076141 6.283430797199287E-5 42-43 1.099600389509875E-4 6.833230991954224E-4 0.0 0.017844943464045974 6.283430797199287E-5 44-45 1.099600389509875E-4 7.697202726569126E-4 0.0 0.022510390830966443 6.283430797199287E-5 46-47 1.099600389509875E-4 8.325545806289054E-4 0.0 0.02747430116075388 7.068859646849197E-5 48-49 1.099600389509875E-4 8.325545806289054E-4 0.0 0.03274452874190478 7.854288496499108E-5 50-51 1.2566861594398573E-4 9.739317735658894E-4 0.0 0.03731572464686726 7.854288496499108E-5 52-53 1.4137719293698395E-4 0.001013203216048385 0.0 0.041879066263333244 9.42514619579893E-5 54-55 1.4923148143348305E-4 0.001021057504544884 0.0 0.04637171928333073 1.099600389509875E-4 56-57 1.5708576992998216E-4 0.0010367660815378823 0.0 0.051005749496265206 1.099600389509875E-4 58-59 1.5708576992998216E-4 0.0010367660815378823 0.0 0.05581257405612266 1.099600389509875E-4 60-61 1.7279434692298037E-4 0.001091746101013376 0.0 0.060823610116889096 1.3352290444048484E-4 62-63 2.19920077901975E-4 0.0011310175434958716 0.0 0.06590533477412402 1.4137719293698395E-4 64-65 2.2777436639847412E-4 0.00123312329395036 0.0 0.0704922392560795 1.4137719293698395E-4 66-67 2.3562865489497323E-4 0.001240977582446859 0.0 0.07510270660352447 1.4923148143348305E-4 68-69 2.3562865489497323E-4 0.001240977582446859 0.0 0.07938329383411649 1.5708576992998216E-4 70-71 2.3562865489497323E-4 0.0012488318709433582 0.0 0.08375027823817 1.5708576992998216E-4 72-73 2.5133723188797147E-4 0.0012566861594398573 0.0 0.08699409938722412 1.7279434692298037E-4 74-75 2.5133723188797147E-4 0.0012802490249293546 0.0 0.08948390884061433 1.7279434692298037E-4 76-77 2.5133723188797147E-4 0.001311666178915351 0.0 0.09172238106211658 1.7279434692298037E-4 78-79 2.5133723188797147E-4 0.0013195204674118501 0.0 0.09353672170480787 1.7279434692298037E-4 80-81 2.5133723188797147E-4 0.0013195204674118501 0.0 0.0941886276500173 1.7279434692298037E-4 82-83 2.5133723188797147E-4 0.0013430833329013475 0.0 0.09470701069078624 1.885029239159786E-4 84-85 2.5133723188797147E-4 0.0013745004868873439 0.0 0.09497405649966721 1.885029239159786E-4 86-87 2.5133723188797147E-4 0.001382354775383843 0.0 0.09507616225012169 1.885029239159786E-4 88 2.5133723188797147E-4 0.001523731968320827 0.0 0.0950840165386182 1.885029239159786E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9340 0.0 49.847595 1 GTATCAA 17085 0.0 36.94955 1 CTTATAC 5315 0.0 33.788433 1 ATCAACG 20735 0.0 29.857073 3 TCAACGC 20845 0.0 29.719458 4 TATCAAC 21190 0.0 29.354904 2 CAACGCA 21385 0.0 28.926033 5 AACGCAG 21880 0.0 28.322165 6 TATACAC 7545 0.0 26.92349 3 ACGCAGA 24965 0.0 24.82231 7 CGCAGAG 25365 0.0 24.430866 8 GTGGTAT 4455 0.0 24.167719 1 TTATACA 8235 0.0 23.544027 2 TGGTATC 4360 0.0 22.475683 2 GCAGAGT 29600 0.0 20.963846 9 ACATCTC 9310 0.0 20.18525 8 ACACATC 9130 0.0 20.168781 6 TACACAT 10235 0.0 19.926882 5 GTACATG 20210 0.0 19.790543 1 GAGTACT 17565 0.0 19.77007 12-13 >>END_MODULE