##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138890_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5690699 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84615932067396 33.0 33.0 33.0 33.0 33.0 2 32.84555306826103 33.0 33.0 33.0 33.0 33.0 3 32.84434144206186 33.0 33.0 33.0 33.0 33.0 4 36.79239017913265 37.0 37.0 37.0 37.0 37.0 5 36.79496420387021 37.0 37.0 37.0 37.0 37.0 6 36.81270613680323 37.0 37.0 37.0 37.0 37.0 7 36.79985428855049 37.0 37.0 37.0 37.0 37.0 8 36.7650824617503 37.0 37.0 37.0 37.0 37.0 9 36.7658169936593 37.0 37.0 37.0 37.0 37.0 10-11 36.77083869661706 37.0 37.0 37.0 37.0 37.0 12-13 36.759563104637934 37.0 37.0 37.0 37.0 37.0 14-15 39.1040062038073 40.0 40.0 40.0 37.0 40.0 16-17 39.06956974881293 40.0 40.0 40.0 37.0 40.0 18-19 39.050841030249536 40.0 40.0 40.0 37.0 40.0 20-21 39.09192692490529 40.0 40.0 40.0 37.0 40.0 22-23 39.13548662737047 40.0 40.0 40.0 37.0 40.0 24-25 39.13673327145997 40.0 40.0 40.0 37.0 40.0 26-27 38.84810998431733 40.0 40.0 40.0 37.0 40.0 28-29 38.859794101354666 40.0 40.0 40.0 37.0 40.0 30-31 38.85837275596208 40.0 40.0 40.0 37.0 40.0 32-33 38.85653473368964 40.0 40.0 40.0 37.0 40.0 34-35 38.83921780038244 40.0 38.5 40.0 37.0 40.0 36-37 38.810298198087835 40.0 37.0 40.0 37.0 40.0 38-39 38.764664122417905 40.0 37.0 40.0 37.0 40.0 40-41 38.74201448812454 40.0 37.0 40.0 37.0 40.0 42-43 38.69654035377906 40.0 37.0 40.0 37.0 40.0 44-45 38.62767076603129 40.0 37.0 40.0 37.0 40.0 46-47 38.556756779598786 40.0 37.0 40.0 37.0 40.0 48-49 38.510503926560794 40.0 37.0 40.0 37.0 40.0 50-51 38.45333863174351 40.0 37.0 40.0 37.0 40.0 52-53 38.382890856949594 40.0 37.0 40.0 37.0 40.0 54-55 38.31753081707126 40.0 37.0 40.0 37.0 40.0 56-57 38.216085266049426 40.0 37.0 40.0 37.0 40.0 58-59 38.086725665341476 40.0 37.0 40.0 37.0 40.0 60-61 37.93614768497872 40.0 37.0 40.0 35.0 40.0 62-63 37.760018161270665 40.0 37.0 40.0 33.0 40.0 64-65 37.55677700748434 37.0 37.0 40.0 33.0 40.0 66-67 37.33980241586666 37.0 37.0 40.0 33.0 40.0 68-69 37.090081221635515 37.0 37.0 40.0 33.0 40.0 70-71 36.84654231847463 37.0 37.0 40.0 33.0 40.0 72-73 36.61185700361223 37.0 37.0 38.5 33.0 40.0 74-75 36.351022586496576 37.0 37.0 37.0 33.0 40.0 76-77 34.67864758853797 37.0 33.0 37.0 30.0 37.0 78-79 30.848877711177465 37.0 33.0 37.0 8.5 37.0 80-81 34.39051963959952 37.0 33.0 37.0 30.0 37.0 82-83 35.58309124152268 37.0 35.0 37.0 33.0 37.0 84-85 35.73251918181566 37.0 37.0 37.0 33.0 37.0 86-87 35.69895508371333 37.0 37.0 37.0 33.0 37.0 88-89 35.620165756571396 37.0 37.0 37.0 33.0 37.0 90-91 35.553239660212384 37.0 37.0 37.0 33.0 37.0 92-93 35.486673611043415 37.0 33.0 37.0 33.0 37.0 94-95 35.442089072445825 37.0 33.0 37.0 33.0 37.0 96-97 35.41691458502027 37.0 33.0 37.0 33.0 37.0 98-99 35.37776577737208 37.0 33.0 37.0 33.0 37.0 100 35.32408761318982 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 0.0 15 1.0 16 0.0 17 0.0 18 6.0 19 7.0 20 17.0 21 78.0 22 314.0 23 869.0 24 2095.0 25 4441.0 26 8052.0 27 13288.0 28 20282.0 29 29465.0 30 41499.0 31 57203.0 32 78775.0 33 110523.0 34 164733.0 35 269741.0 36 592700.0 37 1816201.0 38 2361013.0 39 119394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.82951865842843 20.194900485862984 14.583287571526801 23.392293284181783 2 14.342385706922823 20.798394010999353 42.010322457750796 22.84889782432703 3 17.753181645730997 26.81235147882848 30.918042057136514 24.51642481830401 4 12.78856411050531 18.46889403817412 38.58382313160248 30.15871871971809 5 13.069518949663589 38.052286230802785 35.473635258300966 13.404559561232658 6 29.108392483946172 38.468701296624545 18.75040306999193 13.672503149437354 7 25.738613129951172 33.56703631662824 22.773072341376693 17.921278212043898 8 24.083614332791104 36.42280148712838 21.751071353448847 17.742512826631668 9 25.16659201268596 16.929923722902934 21.041474869783134 36.86200939462797 10-11 23.730397618991972 26.739193199288874 29.061333238675953 20.4690759430432 12-13 25.165291645191566 24.32303131829675 29.067228823735007 21.444448212776674 14-15 22.066059020166065 26.040447755187895 26.810669480146466 25.082823744499578 16-17 21.73569538645428 29.075619708580614 27.09416716645881 22.09451773850629 18-19 21.78766615489591 27.835350279464787 29.04412972817575 21.332853837463553 20-21 22.377428706213305 26.840753947483687 29.324773302008918 21.457044044294094 22-23 21.928352559472973 27.139273617203415 29.463712274235025 21.468661549088583 24-25 21.8637638727319 27.38879071396584 29.201944083216397 21.54550133008587 26-27 22.126943404206173 27.460495941861247 28.881013835821417 21.53154681811117 28-29 21.481879734906425 27.456248458801795 29.58831157043354 21.473560235858237 30-31 22.459386062067786 27.470218560550247 28.901514857760446 21.16888051962152 32-33 21.41176059312159 28.191019417132896 28.916919615301495 21.48030037444402 34-35 21.69132754910913 28.171333192254693 29.00172347825579 21.135615780380387 36-37 21.620526845263154 28.13839323619484 28.808034485839762 21.433045432702247 38-39 21.60766229006742 27.668240118700027 29.086299841197594 21.63779775003496 40-41 21.803997458425364 27.373492634503332 29.13655414930314 21.685955757768163 42-43 21.99987831910596 27.328026006194435 29.004116566653348 21.66797910804626 44-45 21.826920673981558 27.652154115509454 28.71770884784552 21.80321636266347 46-47 22.186103704107943 27.461139800197 28.16865748535483 22.18409901034023 48-49 22.058663408317226 27.611972185339862 28.174974489485173 22.154389916857742 50-51 21.920294956627973 27.877733159733083 28.15605047208672 22.04592141155223 52-53 22.03210229434191 27.877783011892358 28.242783944605865 21.84733074915987 54-55 22.026868691928843 27.85222536135269 27.98398054986702 22.136925396851446 56-57 22.242415844065473 28.129247184941008 27.664442043546757 21.963894927446763 58-59 21.90875278381412 28.33384319208535 28.019089737389013 21.738314286711518 60-61 22.20484386281241 28.487976433970523 27.574029622610418 21.73315008060665 62-63 21.935579139351532 28.704823652802048 27.54166230033309 21.81793490751333 64-65 21.96581542781498 28.538245493971843 27.572674509405626 21.92326456880755 66-67 22.128990184984314 28.324648762609208 27.553831529588663 21.992529522817815 68-69 22.15979979899033 28.145912720875465 27.642439610457124 22.05184786967708 70-71 22.15622154626521 27.88059955426869 27.73414915214516 22.22902974732093 72-73 22.200962327525083 27.86956730002437 27.71259032019156 22.216880052258986 74-75 22.084504970405447 28.017732498569377 27.646673939532047 22.25108859149313 76-77 22.231858701624663 27.923974364985753 27.59797332785116 22.246193605538423 78-79 22.843676943282837 27.81028188379466 27.149501175798264 22.196539997124244 80-81 22.25066572363806 27.888394843272437 27.579850958097563 22.28108847499194 82-83 22.27017886893141 27.883154596511183 27.65067181435209 22.195994720205313 84-85 22.37108530033759 27.817803944085295 27.62586033943452 22.185250416142598 86-87 22.24089298289029 27.82258998998268 27.674268984890816 22.262248042236216 88-89 22.29196461555906 27.759985936202664 27.66106842796373 22.286981020274546 90-91 22.379167738818307 27.69818915901968 27.703141111199557 22.219501990962456 92-93 22.38467979748996 27.678957544994 27.67154109690556 22.264821560610482 94-95 22.24248058260496 27.738903412855016 27.73992444371627 22.278691560823756 96-97 22.330640224990375 27.82091129509716 27.77575569491485 22.072692784997614 98-99 23.487620341554567 29.7211068268726 27.95825464468213 18.8330181868907 100 22.342702887408166 30.716992995045278 21.890859388347856 25.0494447291987 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1026.0 1 951.0 2 1336.0 3 1946.0 4 2748.0 5 4554.5 6 6070.0 7 7190.5 8 8247.0 9 8632.5 10 8339.5 11 7948.5 12 8713.5 13 11302.0 14 17457.5 15 25895.5 16 33123.0 17 38143.5 18 39622.0 19 37560.5 20 33989.5 21 30073.5 22 27646.5 23 28267.0 24 32048.0 25 38841.0 26 48185.5 27 59194.5 28 70728.5 29 83215.5 30 95765.5 31 108145.0 32 121799.5 33 135109.5 34 147890.0 35 160551.5 36 176774.5 37 194357.0 38 208304.0 39 218190.5 40 225508.0 41 229618.0 42 229766.0 43 231131.0 44 234403.0 45 240988.0 46 248294.5 47 253198.5 48 250071.0 49 240703.5 50 232656.5 51 220875.5 52 205615.5 53 191268.0 54 177765.5 55 163694.5 56 149663.5 57 134992.5 58 119369.0 59 103540.5 60 87293.5 61 72016.0 62 57683.5 63 44836.0 64 34107.5 65 25607.0 66 19557.5 67 15066.5 68 11376.5 69 8179.5 70 5728.5 71 4069.0 72 2804.5 73 1874.0 74 1299.5 75 885.0 76 564.5 77 364.0 78 228.0 79 135.5 80 89.0 81 57.0 82 38.5 83 24.5 84 16.0 85 12.0 86 10.5 87 11.5 88 10.0 89 7.0 90 5.0 91 4.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 2.1087040449688165E-4 4 0.02551531894412268 5 0.01653575421929714 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008788825184554342 26-27 0.05197682037779728 28-29 0.08312583395223229 30-31 0.07369863870186835 32-33 0.03429343781035958 34-35 0.0038852645104009154 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.262919216742E-4 56-57 6.294327803556546E-4 58-59 0.0 60-61 0.0 62-63 9.970694135796068E-6 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.0424999064356333E-5 72-73 0.014241808433887377 74-75 0.02829622009040127 76-77 8.047224115406207E-4 78-79 5.5909076961626365 80-81 0.0 82-83 0.012840257128362832 84-85 0.04904708206764427 86-87 0.038354299936275815 88-89 0.00891481143345139 90-91 4.627990549643298E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 88.0 20-21 332.0 22-23 753.0 24-25 1810.0 26-27 2609.0 28-29 4690.0 30-31 11253.0 32-33 14879.0 34-35 21853.0 36-37 39018.0 38-39 48194.0 40-41 44972.0 42-43 45082.0 44-45 54094.0 46-47 53093.0 48-49 46303.0 50-51 41190.0 52-53 39702.0 54-55 44813.0 56-57 49259.0 58-59 49853.0 60-61 50003.0 62-63 51478.0 64-65 54567.0 66-67 59370.0 68-69 53184.0 70-71 47026.0 72-73 44346.0 74-75 45716.0 76-77 47346.0 78-79 47936.0 80-81 47312.0 82-83 45968.0 84-85 46125.0 86-87 48862.0 88-89 52278.0 90-91 54144.0 92-93 55703.0 94-95 60423.0 96-97 174051.0 98-99 332896.0 100-101 3658125.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.57364103283317 #Duplication Level Percentage of deduplicated Percentage of total 1 91.645142765336 81.17343977699619 2 6.2638644466931375 11.096265619594483 3 1.2686491022075168 3.37106610526664 4 0.41002781559591733 1.4527062620827798 5 0.16949479937674486 0.7506385758463937 6 0.07936531841633514 0.4217805134318984 7 0.053685815513652806 0.3328603706302833 8 0.029972836822041132 0.21238426315289247 9 0.018027337660016275 0.14370722412083609 >10 0.05991741603286959 0.8046934935600949 >50 0.0010453035270502164 0.06264079159056145 >100 8.070428187294945E-4 0.1778170037269419 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.757253370807347E-5 0.0 0.0 0.0 3 0.0 1.757253370807347E-5 0.0 0.0 0.0 4 0.0 3.514506741614694E-5 0.0 0.0 0.0 5 0.0 3.514506741614694E-5 0.0 0.0 0.0 6 0.0 3.514506741614694E-5 0.0 0.0 0.0 7 0.0 3.514506741614694E-5 0.0 0.0 0.0 8 0.0 5.271760112422042E-5 0.0 0.0 0.0 9 0.0 1.4058026966458776E-4 0.0 1.757253370807347E-5 0.0 10-11 8.786266854036735E-6 1.4058026966458776E-4 0.0 1.757253370807347E-5 0.0 12-13 1.757253370807347E-5 1.4058026966458776E-4 0.0 1.757253370807347E-5 0.0 14-15 1.757253370807347E-5 1.7572533708073472E-4 0.0 1.757253370807347E-5 0.0 16-17 1.757253370807347E-5 1.7572533708073472E-4 0.0 1.757253370807347E-5 0.0 18-19 1.757253370807347E-5 1.9329787078880818E-4 0.0 3.514506741614694E-5 1.757253370807347E-5 20-21 3.514506741614694E-5 2.1087040449688167E-4 0.0 3.514506741614694E-5 1.757253370807347E-5 22-23 5.271760112422042E-5 2.8116053932917553E-4 0.0 5.271760112422041E-5 1.757253370807347E-5 24-25 7.029013483229388E-5 2.98733073037249E-4 0.0 1.0543520224844084E-4 1.757253370807347E-5 26-27 8.786266854036736E-5 2.98733073037249E-4 0.0 1.493665365186245E-4 1.757253370807347E-5 28-29 1.0543520224844084E-4 2.98733073037249E-4 0.0 4.129545421397266E-4 1.757253370807347E-5 30-31 1.230077359565143E-4 3.3387814045339595E-4 0.0 0.001194932292148996 1.757253370807347E-5 32-33 1.3179400281055102E-4 3.426644073074327E-4 0.0 0.003031262064642674 2.6358800562110206E-5 34-35 1.493665365186245E-4 4.3931334270183684E-4 0.0 0.005640783320291585 3.514506741614694E-5 36-37 1.5815280337266126E-4 5.096034775341307E-4 0.0 0.009225580196738572 3.514506741614694E-5 38-39 1.5815280337266126E-4 5.271760112422042E-4 0.0 0.014769714581635753 4.393133427018368E-5 40-41 1.7572533708073472E-4 6.150386797825715E-4 0.0 0.02127155205362294 5.271760112422042E-5 42-43 1.7572533708073472E-4 6.238249466366083E-4 0.0 0.02775581699190205 5.271760112422042E-5 44-45 1.7572533708073472E-4 6.853288146148654E-4 0.0 0.035241716351541344 5.271760112422042E-5 46-47 1.7572533708073472E-4 7.468326825931227E-4 0.0 0.04282426464657505 5.271760112422042E-5 48-49 1.7572533708073472E-4 7.556189494471593E-4 0.0 0.05009929360171747 7.029013483229388E-5 50-51 1.7572533708073472E-4 8.259090842794532E-4 0.0 0.05804207883776667 7.029013483229388E-5 52-53 1.9329787078880818E-4 8.259090842794532E-4 0.0 0.06626602461314507 8.786266854036736E-5 54-55 1.9329787078880818E-4 8.259090842794532E-4 0.0 0.07371677890536821 1.0543520224844084E-4 56-57 1.9329787078880818E-4 8.434816179875267E-4 0.0 0.07931363089138962 1.0543520224844084E-4 58-59 1.9329787078880818E-4 8.522678848415634E-4 0.0 0.08546401768921533 1.0543520224844084E-4 60-61 1.9329787078880818E-4 8.874129522577104E-4 0.0 0.09057762499826472 1.0543520224844084E-4 62-63 1.9329787078880818E-4 8.961992191117471E-4 0.0 0.0957175911078762 1.0543520224844084E-4 64-65 1.9329787078880818E-4 9.752756207980777E-4 0.0 0.10141109202929201 1.0543520224844084E-4 66-67 1.9329787078880818E-4 0.001001634421360188 0.0 0.10677071481025441 1.0543520224844084E-4 68-69 1.9329787078880818E-4 0.001001634421360188 0.0 0.1110935581024405 1.0543520224844084E-4 70-71 1.9329787078880818E-4 0.0010104206882142247 0.0 0.11487165284967629 1.0543520224844084E-4 72-73 2.2844293820495514E-4 0.001027993221922298 0.0 0.11796441878229721 1.4058026966458776E-4 74-75 2.2844293820495514E-4 0.0010543520224844082 0.0 0.12038064216715733 1.4058026966458776E-4 76-77 2.2844293820495514E-4 0.0011158558904626656 0.0 0.1228407968862876 1.4058026966458776E-4 78-79 2.2844293820495514E-4 0.0011422146910247757 0.0 0.12451897385540862 1.4058026966458776E-4 80-81 2.460154719130286E-4 0.0011422146910247757 0.0 0.12514279880204524 1.4058026966458776E-4 82-83 2.460154719130286E-4 0.0011510009578788124 0.0 0.12564361601272533 1.5815280337266126E-4 84-85 2.5480173876706535E-4 0.0011773597584409227 0.0 0.12585448641722222 1.5815280337266126E-4 86-87 2.635880056211021E-4 0.001194932292148996 0.0 0.1258808452177843 1.5815280337266126E-4 88 2.635880056211021E-4 0.0012476498932732164 0.0 0.12588963148463836 1.5815280337266126E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8850 0.0 50.437458 1 CTTATAC 5625 0.0 40.53435 1 GTATCAA 16140 0.0 36.71916 1 TATACAC 7995 0.0 30.825188 3 ATCAACG 19240 0.0 30.410757 3 TCAACGC 19260 0.0 30.379175 4 CAACGCA 19695 0.0 29.700106 5 TATCAAC 19995 0.0 29.388233 2 AACGCAG 20240 0.0 28.998787 6 TTATACA 8370 0.0 28.793156 2 ACGCAGA 22895 0.0 25.61767 7 CGCAGAG 23095 0.0 25.395823 8 GTGGTAT 3965 0.0 25.263968 1 CTCGTAT 11160 0.0 23.687399 9 TACACAT 10535 0.0 23.62547 5 TCTCGTA 11165 0.0 23.414133 8 TGGTATC 3995 0.0 23.395641 2 AATCTCG 11305 0.0 23.161232 6 ACATCTC 9915 0.0 23.07024 8 ACACATC 10015 0.0 22.923546 6 >>END_MODULE