##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138889_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6421220 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8376624691258 33.0 33.0 33.0 33.0 33.0 2 32.83506109430918 33.0 33.0 33.0 33.0 33.0 3 32.834221222758295 33.0 33.0 33.0 33.0 33.0 4 36.78340720299258 37.0 37.0 37.0 37.0 37.0 5 36.79197878284812 37.0 37.0 37.0 37.0 37.0 6 36.80367453536867 37.0 37.0 37.0 37.0 37.0 7 36.788219216908935 37.0 37.0 37.0 37.0 37.0 8 36.784582369082514 37.0 37.0 37.0 37.0 37.0 9 36.78566985712995 37.0 37.0 37.0 37.0 37.0 10-11 36.76379130445616 37.0 37.0 37.0 37.0 37.0 12-13 36.75125669265342 37.0 37.0 37.0 37.0 37.0 14-15 39.08393879979194 40.0 40.0 40.0 37.0 40.0 16-17 39.038278785028396 40.0 40.0 40.0 37.0 40.0 18-19 39.020615786408186 40.0 40.0 40.0 37.0 40.0 20-21 39.07345274044255 40.0 40.0 40.0 37.0 40.0 22-23 39.105087411619586 40.0 40.0 40.0 37.0 40.0 24-25 39.11008081400967 40.0 40.0 40.0 37.0 40.0 26-27 38.838108790282504 40.0 40.0 40.0 37.0 40.0 28-29 38.834386798601955 40.0 40.0 40.0 37.0 40.0 30-31 38.85413411351813 40.0 38.5 40.0 37.0 40.0 32-33 38.83709390299417 40.0 37.0 40.0 37.0 40.0 34-35 38.8164850184772 40.0 37.0 40.0 37.0 40.0 36-37 38.7803468797978 40.0 37.0 40.0 37.0 40.0 38-39 38.724515976260705 40.0 37.0 40.0 37.0 40.0 40-41 38.69450399841584 40.0 37.0 40.0 37.0 40.0 42-43 38.64582198041763 40.0 37.0 40.0 37.0 40.0 44-45 38.57574386352388 40.0 37.0 40.0 37.0 40.0 46-47 38.500382315632734 40.0 37.0 40.0 37.0 40.0 48-49 38.43939072281176 40.0 37.0 40.0 37.0 40.0 50-51 38.37157819700208 40.0 37.0 40.0 37.0 40.0 52-53 38.30776515364869 40.0 37.0 40.0 37.0 40.0 54-55 38.23412690657257 40.0 37.0 40.0 37.0 40.0 56-57 38.12648465273591 40.0 37.0 40.0 37.0 40.0 58-59 37.99261605856621 40.0 37.0 40.0 37.0 40.0 60-61 37.827227847720124 40.0 37.0 40.0 33.0 40.0 62-63 37.64478250754228 38.5 37.0 40.0 33.0 40.0 64-65 37.43876592807405 37.0 37.0 40.0 33.0 40.0 66-67 37.21481946524831 37.0 37.0 40.0 33.0 40.0 68-69 36.95769992361183 37.0 37.0 40.0 33.0 40.0 70-71 36.708196401215076 37.0 37.0 40.0 33.0 40.0 72-73 36.47232094967347 37.0 37.0 37.0 33.0 40.0 74-75 36.21015791198785 37.0 37.0 37.0 33.0 40.0 76-77 34.513365425557346 35.0 33.0 37.0 30.0 37.0 78-79 31.36012957303538 37.0 33.0 37.0 8.5 37.0 80-81 34.473789140583825 37.0 33.0 37.0 30.0 37.0 82-83 35.52554441476311 37.0 35.0 37.0 33.0 37.0 84-85 35.650027290241255 37.0 37.0 37.0 33.0 37.0 86-87 35.614952882426074 37.0 37.0 37.0 33.0 37.0 88-89 35.5349175163699 37.0 37.0 37.0 33.0 37.0 90-91 35.469030002650825 37.0 33.0 37.0 33.0 37.0 92-93 35.398939537561674 37.0 33.0 37.0 33.0 37.0 94-95 35.35171850393474 37.0 33.0 37.0 33.0 37.0 96-97 35.32993514038894 37.0 33.0 37.0 33.0 37.0 98-99 35.29130358094195 37.0 33.0 37.0 33.0 37.0 100 35.23920663721249 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 3.0 20 17.0 21 87.0 22 324.0 23 925.0 24 2412.0 25 5106.0 26 9764.0 27 16243.0 28 24783.0 29 36167.0 30 49838.0 31 68237.0 32 93471.0 33 130135.0 34 191463.0 35 312964.0 36 683494.0 37 2061167.0 38 2611470.0 39 123148.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.55294476750524 20.063118846574326 14.622890977104039 23.761045408816393 2 14.476548070304396 20.66163439346417 42.14876612232567 22.71305141390577 3 17.979569255303325 26.062320078552236 30.88465482724816 25.07345583889628 4 12.330222594057792 18.343896222360716 38.43885863787409 30.8870225457074 5 13.309769254156864 37.53350350392759 35.471083251923915 13.685643989991627 6 29.6937653592308 37.71459317699752 18.668025702280875 13.923615761490806 7 26.191035348422886 33.02476787900119 22.51407053488278 18.270126237693148 8 24.425825621922314 36.40502895088472 21.147943848676732 18.021201578516234 9 25.365101958817792 16.974406732676968 20.876531251070666 36.78396005743457 10-11 24.068938612911563 26.72971024197894 28.650692547522123 20.550658597587372 12-13 25.16877633845282 24.241982053254677 28.652997405477464 21.936244202815043 14-15 22.350199806267344 25.69665889036663 26.38199594469587 25.57114535867016 16-17 21.787682091565156 29.028479011776575 26.980464771492024 22.203374125166246 18-19 21.818844394055958 27.71212479871426 28.878336204023537 21.590694603206245 20-21 22.578778323835827 26.808656468005378 29.010890160621944 21.601675047536848 22-23 22.22092950905168 27.06920353060214 28.79294309437686 21.916923865969316 24-25 22.102584163376406 27.253493721085587 28.96307398849406 21.68084812704395 26-27 22.11757836693378 27.36513341370468 28.863961558954642 21.6533266604069 28-29 21.579977008563507 27.18333212919833 29.131978866104298 22.10471199613387 30-31 22.248728216020883 26.902966742318867 29.213619332537842 21.63468570912241 32-33 21.840024725114194 27.434950100373417 28.90875714764111 21.816268026871274 34-35 21.843304920155372 27.479932199817327 29.209533177424696 21.4672297026026 36-37 22.199003145360095 27.23160291820395 28.72924649591015 21.840147440525804 38-39 21.878681460569254 27.179913440582876 28.96917006447115 21.972235034376723 40-41 22.060922556591912 27.06513033355146 28.949282447576035 21.924664662280595 42-43 22.185214375016994 27.09534746131292 28.78968486771049 21.929753295959596 44-45 22.034591772282425 27.423741122979038 28.495259523210663 22.046407581527873 46-47 22.451045688512842 27.141724839874797 27.90793285869168 22.49929661292068 48-49 22.19360240105333 27.290507140739724 28.06792465646597 22.447965801740974 50-51 22.10829020156271 27.609730125176817 28.006703380722385 22.275276292538088 52-53 22.258708774598592 27.66036241671316 28.071834605980822 22.00909420270743 54-55 22.2111258831067 27.626515280241104 27.806194980105055 22.35616385654714 56-57 22.480007491338142 27.929453728217656 27.40019920149146 22.190339578952745 58-59 22.098792774921154 28.109702293673504 27.883782144117752 21.90772278728759 60-61 22.442343926593324 28.303904782592582 27.33267972874918 21.921071562064913 62-63 22.11676236284225 28.53152014509806 27.317079326663958 22.03463816539573 64-65 22.15696639642808 28.3533896399518 27.34286210481448 22.146781858805646 66-67 22.349656629456433 28.16808453284056 27.279864036785533 22.20239480091747 68-69 22.34068701422502 27.946697278454707 27.413963709950046 22.29865199737023 70-71 22.37885605316251 27.615234742787592 27.510965441271985 22.49494376277791 72-73 22.43073388202067 27.715233210596992 27.433359987028844 22.42067292035349 74-75 22.288490104951507 27.829801157510232 27.44038477403754 22.44132396350072 76-77 22.403848631818498 27.772936064999886 27.341047551847975 22.482167751333645 78-79 22.897631169201 27.722023643112742 26.967952971347415 22.41239221633884 80-81 22.36928489208012 27.808690257654785 27.31119594717365 22.510828903091447 82-83 22.40816371984566 27.79323237463402 27.383361424041546 22.415242481478774 84-85 22.562062555589833 27.724124211375056 27.338675303747628 22.375137929287487 86-87 22.33681251625019 27.788631812033866 27.43295193952129 22.44160373219465 88-89 22.447452929492197 27.762063002217758 27.35089185175254 22.439592216537505 90-91 22.481137314860636 27.740236098017977 27.38911710670689 22.3895094804145 92-93 22.491504340094206 27.733185656092747 27.36201594946858 22.413294054344462 94-95 22.366501249772895 27.841411849620478 27.37938962964433 22.412697270962298 96-97 22.43568460148195 27.916818944061657 27.46298936258041 22.184507091875986 98-99 23.53433981586149 29.86141558797976 27.592979985107597 19.011264611051153 100 22.475969579522104 30.847267401981384 21.446208356417568 25.230554662078948 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1761.0 1 1588.0 2 1962.0 3 2663.5 4 3567.5 5 5506.5 6 7096.5 7 8214.5 8 9095.5 9 9364.0 10 9055.5 11 8731.0 12 9679.5 13 12533.0 14 19375.5 15 28854.0 16 36897.0 17 42140.5 18 43609.0 19 41380.5 20 37350.5 21 32903.0 22 29850.5 23 30064.5 24 33704.0 25 40741.0 26 50833.0 27 62460.0 28 74295.0 29 87533.5 30 100629.5 31 113432.5 32 127619.0 33 142292.0 34 157386.5 35 171292.0 36 186965.0 37 201455.5 38 210787.0 39 218917.0 40 229190.5 41 238897.0 42 245631.5 43 253118.0 44 259960.0 45 269734.0 46 281452.5 47 289714.5 48 287067.0 49 278471.5 50 271189.5 51 258093.5 52 242232.5 53 226989.5 54 212290.5 55 197235.5 56 181711.5 57 164581.5 58 145863.5 59 126990.0 60 106481.5 61 86334.5 62 68422.0 63 52944.0 64 40303.0 65 30030.5 66 22480.0 67 17226.5 68 13016.0 69 9360.0 70 6550.5 71 4570.0 72 3106.0 73 2038.0 74 1333.5 75 877.5 76 568.5 77 353.0 78 222.0 79 149.0 80 109.5 81 80.0 82 54.5 83 32.0 84 20.0 85 12.5 86 8.5 87 7.5 88 6.5 89 5.0 90 3.5 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 2.3360046844680604E-4 4 0.022067457585941613 5 0.015511071104867921 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008256128150063385 26-27 0.05306680308780075 28-29 0.0865213678311855 30-31 0.07610966534221958 32-33 0.03590766756162149 34-35 0.0041871509041344745 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.374730591038504E-4 56-57 7.150771636362151E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 9.15445934770083E-6 72-73 0.013135728377524159 74-75 0.02765998313374748 76-77 9.123195970293745E-4 78-79 5.029471003324568 80-81 0.0 82-83 0.012248340180462107 84-85 0.049015314206346854 86-87 0.0386744438031607 88-89 0.009755110810278654 90-91 2.0173451334574672E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 87.0 20-21 350.0 22-23 838.0 24-25 1918.0 26-27 2914.0 28-29 5047.0 30-31 12288.0 32-33 16053.0 34-35 22563.0 36-37 32684.0 38-39 39393.0 40-41 41248.0 42-43 48960.0 44-45 59556.0 46-47 58810.0 48-49 51263.0 50-51 44906.0 52-53 43860.0 54-55 50899.0 56-57 55582.0 58-59 56717.0 60-61 56232.0 62-63 58544.0 64-65 61590.0 66-67 66843.0 68-69 57238.0 70-71 50446.0 72-73 47131.0 74-75 49091.0 76-77 50366.0 78-79 50280.0 80-81 51184.0 82-83 49413.0 84-85 48994.0 86-87 51516.0 88-89 54943.0 90-91 57951.0 92-93 59271.0 94-95 70240.0 96-97 200540.0 98-99 383274.0 100-101 4200197.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.47156527426617 #Duplication Level Percentage of deduplicated Percentage of total 1 91.10974505166789 79.69512011408717 2 6.498763076850418 11.369139573574245 3 1.4197330087507822 3.72558805640923 4 0.4623508769620698 1.6177021965520757 5 0.20769510175846195 0.9083707825305329 6 0.10122342926238756 0.5312503080005998 7 0.059304037007276225 0.3631191860876621 8 0.03866535506767364 0.2705695303723754 9 0.024410592163452628 0.1921709435228043 >10 0.07576364074018012 1.0201243141676646 >50 0.001469611859900823 0.08509536676649067 >100 7.729825147040641E-4 0.1418327621038077 >500 7.742659535089185E-5 0.04697941437112879 >1k 2.5808799421239578E-5 0.032937451454258596 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.6720093689361214E-5 0.0 0.0 0.0 3 0.0 6.229345825248161E-5 0.0 0.0 0.0 4 0.0 7.786682281560202E-5 0.0 1.5573364563120402E-5 0.0 5 0.0 9.344018737872243E-5 0.0 1.5573364563120402E-5 0.0 6 1.5573364563120402E-5 9.344018737872243E-5 0.0 1.5573364563120402E-5 0.0 7 1.5573364563120402E-5 1.0901355194184282E-4 0.0 3.1146729126240805E-5 0.0 8 1.5573364563120402E-5 1.2458691650496322E-4 0.0 3.1146729126240805E-5 0.0 9 1.5573364563120402E-5 1.8688037475744486E-4 0.0 3.1146729126240805E-5 0.0 10-11 2.3360046844680604E-5 2.0245373932056525E-4 0.0 3.1146729126240805E-5 0.0 12-13 3.1146729126240805E-5 2.0245373932056525E-4 0.0 3.893341140780101E-5 0.0 14-15 3.1146729126240805E-5 2.803205621361673E-4 0.0 4.6720093689361214E-5 1.5573364563120402E-5 16-17 6.229345825248161E-5 2.803205621361673E-4 0.0 5.450677597092141E-5 3.1146729126240805E-5 18-19 6.229345825248161E-5 2.958939266992877E-4 0.0 6.229345825248161E-5 3.1146729126240805E-5 20-21 6.229345825248161E-5 3.270406558255285E-4 0.0 8.565350509716222E-5 3.1146729126240805E-5 22-23 6.229345825248161E-5 3.504007026702091E-4 0.0 1.4794696334964385E-4 3.893341140780101E-5 24-25 7.008014053404182E-5 4.204808432042509E-4 0.0 2.0245373932056525E-4 4.6720093689361214E-5 26-27 7.786682281560202E-5 4.360542077673713E-4 0.0 2.1802710388368565E-4 4.6720093689361214E-5 28-29 7.786682281560202E-5 4.438408900489315E-4 0.0 3.659740672333295E-4 4.6720093689361214E-5 30-31 8.565350509716222E-5 4.983476660198529E-4 0.0 9.188285092241039E-4 4.6720093689361214E-5 32-33 1.0122686966028263E-4 4.983476660198529E-4 0.0 0.002071257486895014 6.229345825248161E-5 34-35 1.0901355194184282E-4 5.372810774276539E-4 0.0 0.0036519539900517345 6.229345825248161E-5 36-37 1.0901355194184282E-4 5.917878533985753E-4 0.0 0.005902305169422632 6.229345825248161E-5 38-39 1.0901355194184282E-4 6.462946293694968E-4 0.0 0.009382952149280043 6.229345825248161E-5 40-41 1.0901355194184282E-4 6.852280407772977E-4 0.0 0.013470960347099149 6.229345825248161E-5 42-43 1.4016028106808364E-4 7.085880876219784E-4 0.0 0.017558968544918258 7.008014053404182E-5 44-45 1.4016028106808364E-4 8.020282750007008E-4 0.0 0.021896150575747286 8.565350509716222E-5 46-47 1.4016028106808364E-4 8.721084155347426E-4 0.0 0.026856267189101134 9.344018737872243E-5 48-49 1.4016028106808364E-4 8.954684623794232E-4 0.0 0.03183974384929967 1.0901355194184282E-4 50-51 1.4794696334964385E-4 0.0010278420611659466 0.0 0.03647281980682798 1.0901355194184282E-4 52-53 1.5573364563120404E-4 0.0010745621548553079 0.0 0.04077885510853078 1.1680023422340302E-4 54-55 1.5573364563120404E-4 0.001082348837136868 0.0 0.04524062405586478 1.2458691650496322E-4 56-57 1.5573364563120404E-4 0.0011057088839815487 0.0 0.050582288101015074 1.2458691650496322E-4 58-59 1.5573364563120404E-4 0.0011057088839815487 0.0 0.055542404714368915 1.3237359878652343E-4 60-61 1.5573364563120404E-4 0.0011290689308262295 0.0 0.06025334749471284 1.4016028106808364E-4 62-63 1.7130701019432443E-4 0.0011446422953893497 0.0 0.06547042462335817 1.5573364563120404E-4 64-65 1.7130701019432443E-4 0.001269229211894313 0.0 0.07029038095564394 1.5573364563120404E-4 66-67 1.7130701019432443E-4 0.0013237359878652344 0.0 0.07530500434496872 1.5573364563120404E-4 68-69 1.7130701019432443E-4 0.0013548827169914753 0.0 0.07940858590735095 1.5573364563120404E-4 70-71 1.8688037475744486E-4 0.0013782427638361558 0.0 0.08357446092798565 1.7130701019432443E-4 72-73 1.8688037475744486E-4 0.001393816128399276 0.0 0.08652561351269697 2.0245373932056525E-4 74-75 1.8688037475744486E-4 0.0014249628575255168 0.0 0.0888071114211941 2.0245373932056525E-4 76-77 1.8688037475744486E-4 0.0014716829512148783 0.0 0.09087058222580756 2.0245373932056525E-4 78-79 2.0245373932056525E-4 0.0015339764094673596 0.0 0.09266930583284796 2.0245373932056525E-4 80-81 2.0245373932056525E-4 0.0015573364563120403 0.0 0.0933856806027515 2.0245373932056525E-4 82-83 2.0245373932056525E-4 0.0015962698677198413 0.0 0.09381394812823732 2.5696051529148665E-4 84-85 2.0245373932056525E-4 0.0016040565500014016 0.0 0.09401640186755787 2.6474719757304686E-4 86-87 2.0245373932056525E-4 0.0016507766436907629 0.0 0.0940709086435288 2.6474719757304686E-4 88 2.1802710388368565E-4 0.0017597901956326056 0.0 0.09407869532581035 2.6474719757304686E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9885 0.0 50.91769 1 CTTATAC 6135 0.0 40.367184 1 GTATCAA 17985 0.0 36.78244 1 TATACAC 8695 0.0 31.781664 3 TCAACGC 21685 0.0 30.097406 4 ATCAACG 21715 0.0 30.017437 3 TTATACA 8800 0.0 29.388859 2 TATCAAC 22410 0.0 29.161812 2 CAACGCA 22360 0.0 29.144283 5 AACGCAG 22875 0.0 28.449266 6 ACGCAGA 26165 0.0 24.88816 7 CGCAGAG 26270 0.0 24.74052 8 ACACATC 11190 0.0 22.689903 6 GTGGTAT 4620 0.0 22.281929 1 TACACAT 12100 0.0 22.17014 5 TGGTATC 4480 0.0 21.659817 2 GCAGAGT 30000 0.0 21.566038 9 ACATCTC 11755 0.0 21.527563 8 GAGTACT 18085 0.0 20.452545 12-13 CACATCT 12725 0.0 19.555119 7 >>END_MODULE