##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138888_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6588996 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.891491207461655 33.0 33.0 33.0 33.0 33.0 2 32.94193364209054 33.0 33.0 33.0 33.0 33.0 3 33.601997633630376 33.0 33.0 33.0 33.0 37.0 4 36.76907483325229 37.0 37.0 37.0 37.0 37.0 5 36.78447035026277 37.0 37.0 37.0 37.0 37.0 6 36.79430599138321 37.0 37.0 37.0 37.0 37.0 7 36.78593703805557 37.0 37.0 37.0 37.0 37.0 8 36.7702989954767 37.0 37.0 37.0 37.0 37.0 9 36.78050388860458 37.0 37.0 37.0 37.0 37.0 10-11 36.76900464046419 37.0 37.0 37.0 37.0 37.0 12-13 37.014805669938184 37.0 37.0 37.0 37.0 38.5 14-15 39.03499964182707 40.0 40.0 40.0 37.0 40.0 16-17 38.98065251519351 40.0 40.0 40.0 37.0 40.0 18-19 38.98977052042527 40.0 40.0 40.0 37.0 40.0 20-21 39.05858199204667 40.0 40.0 40.0 37.0 40.0 22-23 39.09003042243458 40.0 40.0 40.0 37.0 40.0 24-25 39.0699760866633 40.0 40.0 40.0 37.0 40.0 26-27 38.7879181699773 40.0 40.0 40.0 37.0 40.0 28-29 38.81445523413934 40.0 38.5 40.0 37.0 40.0 30-31 38.801136374595146 40.0 37.0 40.0 37.0 40.0 32-33 38.776001184156684 40.0 37.0 40.0 37.0 40.0 34-35 38.74985649000814 40.0 37.0 40.0 37.0 40.0 36-37 38.71226489487952 40.0 37.0 40.0 37.0 40.0 38-39 38.65810527465662 40.0 37.0 40.0 37.0 40.0 40-41 38.61494589852951 40.0 37.0 40.0 37.0 40.0 42-43 38.5462421751153 40.0 37.0 40.0 37.0 40.0 44-45 38.45916785877421 40.0 37.0 40.0 37.0 40.0 46-47 38.365714892017664 40.0 37.0 40.0 37.0 40.0 48-49 38.2983631603871 40.0 37.0 40.0 37.0 40.0 50-51 38.218181562835035 40.0 37.0 40.0 37.0 40.0 52-53 38.146018996406866 40.0 37.0 40.0 37.0 40.0 54-55 38.05097576477055 40.0 37.0 40.0 37.0 40.0 56-57 37.91553012090563 40.0 37.0 40.0 35.0 40.0 58-59 37.769401050808035 40.0 37.0 40.0 33.0 40.0 60-61 37.601720575654966 37.0 37.0 40.0 33.0 40.0 62-63 37.4143887177094 37.0 37.0 40.0 33.0 40.0 64-65 37.20720836615729 37.0 37.0 40.0 33.0 40.0 66-67 36.98065754790857 37.0 37.0 40.0 33.0 40.0 68-69 36.72607851880437 37.0 37.0 40.0 33.0 40.0 70-71 36.49187606126542 37.0 37.0 38.5 33.0 40.0 72-73 36.26322944772109 37.0 37.0 37.0 33.0 40.0 74-75 35.80026353954635 37.0 35.0 37.0 33.0 40.0 76-77 33.938397028516796 35.0 33.0 37.0 27.0 37.0 78-79 31.597546062891865 37.0 33.0 37.0 10.5 37.0 80-81 34.50829205391137 37.0 33.0 37.0 30.0 37.0 82-83 35.47523824288989 37.0 35.0 37.0 33.0 37.0 84-85 35.59048634435499 37.0 37.0 37.0 33.0 37.0 86-87 35.57149182598703 37.0 37.0 37.0 33.0 37.0 88-89 35.49728403778333 37.0 35.0 37.0 33.0 37.0 90-91 35.43060152346141 37.0 33.0 37.0 33.0 37.0 92-93 35.36326192008411 37.0 33.0 37.0 33.0 37.0 94-95 35.32231351946126 37.0 33.0 37.0 33.0 37.0 96-97 35.29361183457644 37.0 33.0 37.0 33.0 37.0 98-99 35.2464164498238 37.0 33.0 37.0 33.0 37.0 100 35.18018674984135 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 0.0 17 1.0 18 5.0 19 2.0 20 25.0 21 97.0 22 371.0 23 1089.0 24 2684.0 25 5445.0 26 10072.0 27 16869.0 28 25823.0 29 36923.0 30 52204.0 31 72084.0 32 98410.0 33 139159.0 34 205327.0 35 336890.0 36 757422.0 37 2194230.0 38 2485779.0 39 148083.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.48501687438979 0.0 24.01595148504799 29.49903164056222 2 15.92563683409266 23.404585335988482 38.56211927798632 22.107658551932545 3 16.587397049036266 25.15555811886876 32.830067259146155 25.426977572948818 4 13.173084673609065 23.52054310217761 36.514215947235705 26.792156276977618 5 17.27406493533697 35.98894318499537 31.81457203337991 14.922419846287745 6 27.21501120959855 37.39231288044491 19.964953689454358 15.427722220502183 7 26.34887014652915 32.893053812750836 21.91811924001775 18.83995680070226 8 24.428243696004674 31.69303790744447 21.742508266813335 22.13621012973752 9 24.867582253806194 19.887885802328608 22.719743645314097 32.5247882985511 10-11 25.23911837251077 25.696995414779426 27.543392043340138 21.52049416936966 12-13 25.934413983556826 24.0676500638337 27.552414662264173 22.445521290345297 14-15 23.292585091871356 26.044491452111973 26.202565610906426 24.46035784511024 16-17 21.473537091235144 28.77956672002836 27.169632520645028 22.577263668091465 18-19 21.930374521399013 27.02534650195568 29.476167537512545 21.56811143913276 20-21 22.950290211165182 26.254780254379273 29.434733639073325 21.360195895382226 22-23 22.90626086684629 25.994073105349457 29.29113593198096 21.808530095823293 24-25 22.300380915131598 26.41621689084097 29.547728568817067 21.735673625210364 26-27 22.274123870030525 26.647738237604717 29.34859510737844 21.729542784986318 28-29 22.011725076189723 26.445532361458206 29.40409608791731 22.138646474434758 30-31 22.192839727218274 26.79340580755934 29.281935502787565 21.731818962434822 32-33 22.044802909514573 26.764650387152656 29.480184091767438 21.71036261156533 34-35 22.19605031989866 26.44079232549555 29.356802269388833 22.00635508521696 36-37 22.005338842833954 26.92186139348987 29.225641442958043 21.84715832071813 38-39 22.025116452694785 26.687915617924894 29.303151075654494 21.98381685372583 40-41 22.225724079049012 26.518626994129807 29.173739878843225 22.08190904797796 42-43 22.33390744245825 26.76675048186507 28.792982245747634 22.106359829929048 44-45 22.249756300522588 27.15341847042066 28.364527638127175 22.23229759092958 46-47 22.523387433278767 26.915893613763487 27.797784121827334 22.762934831130416 48-49 22.384227650831413 27.362581671305968 27.62232031329263 22.63087036456999 50-51 22.34415601570214 27.605165067348423 27.35571663897456 22.694962277974874 52-53 22.615603983814513 27.264298453995107 27.466094782267962 22.65400277992242 54-55 22.56729085750359 27.311403197349804 27.393386958122505 22.7279189870241 56-57 22.663049431664568 27.690016850484195 26.820507333989678 22.82642638386156 58-59 22.558767879863947 27.556343907409158 27.273990504364487 22.61089770836241 60-61 22.661950242907196 27.786478747763553 26.982424988330934 22.569146020998314 62-63 22.49482002108151 28.024647118747524 26.97689735120983 22.503635508961136 64-65 22.62784739917626 27.779028420158795 26.949827320925678 22.643296859739266 66-67 22.67598782279603 27.726899425565378 26.893431464977034 22.70368128666155 68-69 22.890545295152073 27.541583869900133 26.793676245706806 22.77419458924099 70-71 22.821041752702705 27.168862224853406 27.095344363841278 22.914751658602608 72-73 22.63700187792131 27.362671640627127 26.989260812412713 23.01106566903885 74-75 22.59197747804517 27.57110369200374 27.112782213059024 22.72413661689207 76-77 22.970004999246985 27.276141755356388 26.684354089109775 23.069499156286856 78-79 23.022579439733523 27.36150111803101 26.642081649448706 22.973837792786757 80-81 22.79324892784847 27.5698813006992 26.730277785668484 22.906591985783848 82-83 22.8963111884502 27.12925279753985 26.93941241462246 23.03502359938749 84-85 22.736813225049655 27.3305574508488 27.048556479783198 22.884072844318347 86-87 22.77857984488094 27.248216794421932 26.965481396718932 23.007721963978195 88-89 23.026997881984826 27.045490721315378 26.884422007609615 23.04308938909018 90-91 22.82003654700203 26.93808568980078 27.168654153950193 23.073223609246998 92-93 22.91519849040849 27.10146907326977 26.93779517781315 23.045537258508595 94-95 22.906394515181532 27.036470177507482 26.984369618511455 23.072765688799535 96-97 23.037172495797286 27.272677573222904 27.110899722552517 22.579250208427297 98-99 24.057040657988598 29.246691966796146 26.650845528877603 20.045421846337653 100 23.481344367862413 29.372675840537088 21.08688800845836 26.059091783142136 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1480.0 1 1427.0 2 2247.0 3 3319.5 4 4705.5 5 8126.0 6 10740.0 7 12276.0 8 13337.5 9 13204.5 10 12551.5 11 11642.0 12 12799.5 13 17121.0 14 28363.5 15 46084.5 16 62352.0 17 72633.0 18 74337.0 19 68159.0 20 58024.0 21 46471.5 22 36964.0 23 32642.0 24 33369.0 25 38762.0 26 48023.0 27 58720.0 28 69591.5 29 81867.5 30 94141.5 31 105299.0 32 117515.5 33 130875.0 34 145099.0 35 157755.0 36 171291.5 37 184002.5 38 192927.0 39 203142.5 40 215939.5 41 227723.0 42 236442.0 43 247547.0 44 261649.0 45 277090.5 46 292588.5 47 298984.0 48 295630.0 49 290611.0 50 286041.5 51 280134.0 52 270962.5 53 259497.0 54 248075.0 55 234223.5 56 215773.0 57 194067.0 58 170715.5 59 146759.0 60 123723.5 61 101610.0 62 81497.5 63 64790.5 64 49815.0 65 38026.0 66 28735.5 67 21351.5 68 16053.0 69 11663.0 70 8258.5 71 5783.5 72 3929.0 73 2567.5 74 1666.0 75 1110.0 76 739.0 77 496.5 78 352.0 79 236.5 80 152.0 81 92.5 82 61.0 83 45.0 84 32.5 85 18.0 86 8.5 87 4.5 88 2.5 89 2.5 90 2.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.580059238160108E-4 2 5.311886666800223E-4 3 0.004568222533448191 4 0.020625297086232865 5 0.012778881638416537 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.588608193860406E-6 22-23 5.540116170923663E-4 24-25 0.013640208937335118 26-27 0.057618208447309256 28-29 0.08556008000703326 30-31 0.07115680028797576 32-33 0.03195609775452711 34-35 0.003201181710867736 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 3.3426579562571425E-5 54-55 3.035801715599012E-4 56-57 5.196007456015158E-4 58-59 0.0 60-61 8.703386835953343E-6 62-63 0.0 64-65 8.894334593482659E-6 66-67 5.4000875354189495E-5 68-69 1.8229611250805634E-4 70-71 0.0015312143110610217 72-73 0.01780406076211639 74-75 0.06905990112160594 76-77 0.9619445209276686 78-79 4.088419914735129 80-81 0.0011518669175914385 82-83 0.01756320159582134 84-85 0.05109680240747587 86-87 0.037100941154509695 88-89 0.007497199304440165 90-91 2.0770058216396174E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 88.0 20-21 415.0 22-23 880.0 24-25 2092.0 26-27 3762.0 28-29 8049.0 30-31 16037.0 32-33 21859.0 34-35 31133.0 36-37 44020.0 38-39 52416.0 40-41 54990.0 42-43 69204.0 44-45 84807.0 46-47 80650.0 48-49 66705.0 50-51 55477.0 52-53 53248.0 54-55 57541.0 56-57 62204.0 58-59 62622.0 60-61 61766.0 62-63 62194.0 64-65 63378.0 66-67 71190.0 68-69 66345.0 70-71 60259.0 72-73 57113.0 74-75 57894.0 76-77 60589.0 78-79 62509.0 80-81 60720.0 82-83 59228.0 84-85 58147.0 86-87 61242.0 88-89 66492.0 90-91 67667.0 92-93 68398.0 94-95 83145.0 96-97 282870.0 98-99 1074173.0 100-101 3255478.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.51805296184061 #Duplication Level Percentage of deduplicated Percentage of total 1 91.05748123394896 79.69173465204553 2 6.613846118980176 11.57661869844742 3 1.3538731616367572 3.554650291912209 4 0.458981742856727 1.6067675391941179 5 0.20521197126775576 0.8979876084907582 6 0.10654416563147791 0.5594722758306481 7 0.058899731796285146 0.3608352892749843 8 0.03402168043984506 0.23820089844681414 9 0.024789325884828416 0.1952562182109066 >10 0.08446331318914262 1.1125366333691364 >50 0.0012839523538297226 0.07562802602023236 >100 5.529931612438873E-4 0.08916471194005425 >500 2.5304431222746283E-5 0.014527740260605451 >1k 2.530442175719715E-5 0.02661941655665189 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.0353638096001272E-5 0.0 0.0 0.0 3 0.0 3.0353638096001272E-5 0.0 0.0 0.0 4 0.0 3.0353638096001272E-5 0.0 0.0 0.0 5 0.0 3.0353638096001272E-5 0.0 0.0 0.0 6 0.0 3.0353638096001272E-5 0.0 0.0 1.5176819048000636E-5 7 0.0 4.5530457144001906E-5 0.0 1.5176819048000636E-5 1.5176819048000636E-5 8 0.0 7.588409524000319E-5 0.0 3.0353638096001272E-5 1.5176819048000636E-5 9 0.0 1.8212182857600762E-4 0.0 3.0353638096001272E-5 1.5176819048000636E-5 10-11 0.0 1.9729864762400826E-4 0.0 4.5530457144001906E-5 1.5176819048000636E-5 12-13 0.0 1.9729864762400826E-4 0.0 4.5530457144001906E-5 2.2765228572000953E-5 14-15 0.0 3.0353638096001275E-4 0.0 8.34725047640035E-5 5.3118866668002225E-5 16-17 0.0 3.3389001905601397E-4 0.0 9.106091428800381E-5 6.0707276192002543E-5 18-19 0.0 3.490668381040146E-4 0.0 9.106091428800381E-5 9.106091428800381E-5 20-21 0.0 3.490668381040146E-4 0.0 9.106091428800381E-5 9.106091428800381E-5 22-23 0.0 3.945972952480165E-4 0.0 1.4417978095600606E-4 9.106091428800381E-5 24-25 1.5176819048000636E-5 4.173625238200175E-4 0.0 1.8971023810000794E-4 9.106091428800381E-5 26-27 1.5176819048000636E-5 4.4012775239201844E-4 0.0 2.8077115238801174E-4 9.106091428800381E-5 28-29 2.2765228572000953E-5 4.4771616191601875E-4 0.0 6.601916285880276E-4 9.864932381200413E-5 30-31 3.0353638096001272E-5 4.8565820953602035E-4 0.0 0.0016998037333760714 1.0623773333600445E-4 32-33 3.0353638096001272E-5 4.8565820953602035E-4 0.0 0.00358172929532815 1.0623773333600445E-4 34-35 3.0353638096001272E-5 5.160118476320217E-4 0.0 0.006328733543016265 1.0623773333600445E-4 36-37 3.0353638096001272E-5 5.46365485728023E-4 0.0 0.010692069019316448 1.3659137143200574E-4 38-39 3.0353638096001272E-5 5.843075333480245E-4 0.0 0.01723327802900472 1.3659137143200574E-4 40-41 3.0353638096001272E-5 7.057220857320295E-4 0.0 0.023691014533928995 1.3659137143200574E-4 42-43 3.0353638096001272E-5 8.043714095440337E-4 0.0 0.029458205772169236 1.3659137143200574E-4 44-45 3.0353638096001272E-5 8.954323238320375E-4 0.0 0.03662925277234953 1.3659137143200574E-4 46-47 3.0353638096001272E-5 8.954323238320375E-4 0.0 0.04417213183920585 1.4417978095600606E-4 48-49 3.0353638096001272E-5 9.106091428800381E-4 0.0 0.05214755024893018 1.5176819048000638E-4 50-51 3.0353638096001272E-5 0.001001670057168042 0.0 0.05984978591579051 1.5176819048000638E-4 52-53 3.0353638096001272E-5 0.001001670057168042 0.0 0.06736989975407481 1.593566000040067E-4 54-55 3.0353638096001272E-5 0.0010092584666920425 0.0 0.07490519041140714 1.6694500952800699E-4 56-57 3.0353638096001272E-5 0.0010168468762160427 0.0 0.08076344256393539 1.8212182857600762E-4 58-59 3.0353638096001272E-5 0.001024435285740043 0.0 0.08650028016407962 1.8212182857600762E-4 60-61 3.0353638096001272E-5 0.001047200514312044 0.0 0.0928441905261439 1.8212182857600762E-4 62-63 3.0353638096001272E-5 0.0010775541524080453 0.0 0.09884662245962814 1.8212182857600762E-4 64-65 3.0353638096001272E-5 0.0011989687047920504 0.0 0.10428751208833636 1.9729864762400826E-4 66-67 3.0353638096001272E-5 0.001244499161936052 0.0 0.11022923674562862 1.9729864762400826E-4 68-69 3.0353638096001272E-5 0.001244499161936052 0.0 0.11501752315527282 1.9729864762400826E-4 70-71 3.0353638096001272E-5 0.001244499161936052 0.0 0.11878137427917698 1.9729864762400826E-4 72-73 3.0353638096001272E-5 0.0012520875714600523 0.0 0.1218319149078251 2.4282910476801017E-4 74-75 3.0353638096001272E-5 0.0012976180286040544 0.0 0.12433609005074522 2.4282910476801017E-4 76-77 3.0353638096001272E-5 0.001343148485748056 0.0 0.12694650292700133 2.504175142920105E-4 78-79 3.0353638096001272E-5 0.0013507368952720565 0.0 0.12843383119370538 2.5800592381601084E-4 80-81 3.0353638096001272E-5 0.0013507368952720565 0.0 0.12898778508895742 2.807711523880118E-4 82-83 3.0353638096001272E-5 0.0013886789428920582 0.0 0.12955691580325743 3.0353638096001275E-4 84-85 3.0353638096001272E-5 0.0014266209905120597 0.0 0.12974662604135745 3.0353638096001275E-4 86-87 3.0353638096001272E-5 0.0014721514476560616 0.0 0.12979974490802543 3.0353638096001275E-4 88 3.0353638096001272E-5 0.0015328587238480642 0.0 0.12980733331754943 3.0353638096001275E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15005 0.0 56.720123 1 GTATCAA 27540 0.0 37.614624 1 CTTATAC 5870 0.0 35.772858 1 GTGGTAT 5145 0.0 32.314217 1 TGGTATC 5005 0.0 31.569569 2 TTGTGCG 3110 0.0 31.160902 7 ATCAACG 33720 0.0 30.292633 3 GTGCGCT 3275 0.0 29.213207 9 TCAACGC 35115 0.0 29.064169 4 TATACAC 7705 0.0 28.806044 3 AACGCAG 35815 0.0 28.486383 6 TATCAAC 35990 0.0 28.45076 2 ACGCAGA 36090 0.0 28.280748 7 CAACGCA 36240 0.0 28.178919 5 TGTGCGC 3630 0.0 26.469872 8 TTATACA 8020 0.0 26.234318 2 TCGAAGG 4980 0.0 25.728468 94 CGCAGAG 41855 0.0 24.38543 8 ACACATC 8720 0.0 22.700075 6 GCAGAGT 45950 0.0 22.08659 9 >>END_MODULE