##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138887_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6265972 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.845838442942295 33.0 33.0 33.0 33.0 33.0 2 32.84195795959509 33.0 33.0 33.0 33.0 33.0 3 32.84206009857689 33.0 33.0 33.0 33.0 33.0 4 36.791490769508705 37.0 37.0 37.0 37.0 37.0 5 36.802419959744476 37.0 37.0 37.0 37.0 37.0 6 36.81381212683363 37.0 37.0 37.0 37.0 37.0 7 36.80028381869565 37.0 37.0 37.0 37.0 37.0 8 36.79738674223249 37.0 37.0 37.0 37.0 37.0 9 36.796767045878916 37.0 37.0 37.0 37.0 37.0 10-11 36.777584946118495 37.0 37.0 37.0 37.0 37.0 12-13 36.76618416105275 37.0 37.0 37.0 37.0 37.0 14-15 39.15340126001202 40.0 40.0 40.0 37.0 40.0 16-17 39.117323856538135 40.0 40.0 40.0 37.0 40.0 18-19 39.0892223903969 40.0 40.0 40.0 37.0 40.0 20-21 39.13877642138682 40.0 40.0 40.0 37.0 40.0 22-23 39.17192266024834 40.0 40.0 40.0 37.0 40.0 24-25 39.17803060264893 40.0 40.0 40.0 37.0 40.0 26-27 38.91591346917133 40.0 40.0 40.0 37.0 40.0 28-29 38.92412606056067 40.0 40.0 40.0 37.0 40.0 30-31 38.948777334034325 40.0 40.0 40.0 37.0 40.0 32-33 38.94063038551134 40.0 40.0 40.0 37.0 40.0 34-35 38.92192377283382 40.0 40.0 40.0 37.0 40.0 36-37 38.89271895650087 40.0 40.0 40.0 37.0 40.0 38-39 38.85344034492236 40.0 40.0 40.0 37.0 40.0 40-41 38.812550131824636 40.0 40.0 40.0 37.0 40.0 42-43 38.76025920383139 40.0 37.0 40.0 37.0 40.0 44-45 38.69650842365347 40.0 37.0 40.0 37.0 40.0 46-47 38.62942758208529 40.0 37.0 40.0 37.0 40.0 48-49 38.57984380574324 40.0 37.0 40.0 37.0 40.0 50-51 38.527994938033764 40.0 37.0 40.0 37.0 40.0 52-53 38.46414161167792 40.0 37.0 40.0 37.0 40.0 54-55 38.39527278160319 40.0 37.0 40.0 37.0 40.0 56-57 38.293244004347926 40.0 37.0 40.0 37.0 40.0 58-59 38.16632527016577 40.0 37.0 40.0 37.0 40.0 60-61 38.01643512176596 40.0 37.0 40.0 37.0 40.0 62-63 37.835036067092915 40.0 37.0 40.0 35.0 40.0 64-65 37.62404225186836 37.0 37.0 40.0 33.0 40.0 66-67 37.40015922313665 37.0 37.0 40.0 33.0 40.0 68-69 37.14620208837033 37.0 37.0 40.0 33.0 40.0 70-71 36.89469789408102 37.0 37.0 40.0 33.0 40.0 72-73 36.648866099419905 37.0 37.0 38.5 33.0 40.0 74-75 36.37925857871092 37.0 37.0 37.0 33.0 40.0 76-77 34.686687534054045 37.0 33.0 37.0 30.0 37.0 78-79 31.327281928732077 37.0 33.0 37.0 8.5 37.0 80-81 34.54906844891403 37.0 33.0 37.0 30.0 37.0 82-83 35.62642102421698 37.0 35.0 37.0 33.0 37.0 84-85 35.75158647156057 37.0 37.0 37.0 33.0 37.0 86-87 35.71415887755714 37.0 37.0 37.0 33.0 37.0 88-89 35.63629899148402 37.0 37.0 37.0 33.0 37.0 90-91 35.57082474815577 37.0 37.0 37.0 33.0 37.0 92-93 35.50200300756258 37.0 33.0 37.0 33.0 37.0 94-95 35.45309557467098 37.0 33.0 37.0 33.0 37.0 96-97 35.424751000612034 37.0 33.0 37.0 33.0 37.0 98-99 35.38706885333348 37.0 33.0 37.0 33.0 37.0 100 35.337311703897285 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 19.0 21 79.0 22 309.0 23 924.0 24 2287.0 25 5080.0 26 9179.0 27 15084.0 28 23108.0 29 33226.0 30 45783.0 31 61937.0 32 83515.0 33 115062.0 34 168131.0 35 274828.0 36 611412.0 37 1978619.0 38 2711523.0 39 125864.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.53255073594328 20.281434388790757 14.429700611493319 23.756314263772644 2 14.28613150521579 21.120649757132654 42.01573195667009 22.577486780981467 3 17.79048560187783 26.37425159065911 30.865202372949952 24.970060434513105 4 12.197376247154185 18.41570752604134 39.442189927882076 29.944726298922397 5 13.162897092599247 37.7361773283492 35.822560556416875 13.278365022634683 6 29.254615245647443 38.335999586337124 19.116236076382084 13.29314909163335 7 25.898408100131952 33.03801868249651 23.395109330204473 17.668463887167064 8 24.070343755126896 36.5841245380605 21.594351203612145 17.751180503200462 9 25.413886305269155 16.947250961223574 21.50419759296722 36.134665140540044 10-11 23.73926982118656 26.945923154460317 29.295031959925772 20.019775064427357 12-13 24.7071005105034 24.544571855731242 29.298151986635112 21.450175647130244 14-15 21.92604754697276 25.974924560786416 26.967667586130297 25.13136030611053 16-17 21.40556963867697 29.143259816673293 27.582145276104008 21.869025268545723 18-19 21.435995883799034 28.209286603898004 29.352748464244655 21.001969048058307 20-21 22.219308729177158 27.385251087818595 29.32442453480688 21.071015648197363 22-23 21.8779272437141 27.42534386360339 29.171351719649195 21.525377173033313 24-25 21.72178317377179 27.536959877879724 29.247036452892594 21.49422049545589 26-27 21.764753855391287 27.67679181729758 29.083077974009225 21.475376353301908 28-29 21.573228532004972 27.694085677100276 29.168969440637348 21.563716350257398 30-31 21.957613638708725 27.563596899234728 29.0750415975241 21.40374786453245 32-33 21.72595983768265 27.69463276252576 29.055807758454055 21.523599641337533 34-35 21.793886707211065 27.7453649661557 29.041886342757422 21.418861983875814 36-37 21.85326528378388 27.62371619931058 28.95900322674795 21.564015290157595 38-39 21.642196148107388 27.73779416734441 29.032428381894128 21.58758130265408 40-41 21.889799818866436 27.60205955090294 28.914053356550262 21.59408727368036 42-43 21.83190794866316 27.68885840778591 28.765390604257068 21.713843039293856 44-45 21.867688788991654 27.85846221660102 28.539759490107276 21.734089504300048 46-47 21.98835496426114 27.828035818719854 28.16699650572868 22.016612711290318 48-49 21.941300108427168 27.912038846253672 28.179921646987093 21.966739398332066 50-51 21.925553596449472 28.039241155529933 28.08427638591857 21.950928862102025 52-53 22.034585644416055 27.99046304827132 28.038471287593786 21.936480019718843 54-55 22.04678641830369 27.909914147907955 28.02342910856507 22.019870325223284 56-57 22.072609757574327 28.019510073230048 27.92317065599964 21.98470951319598 58-59 21.90597064568626 28.05426526222281 28.054727934270414 21.98503615782052 60-61 22.058434296710942 28.10852687372399 27.941725251916505 21.891313577648567 62-63 21.921618584624134 28.20356234008314 27.898921993089758 21.975897082202966 64-65 21.92312905046004 28.19079502564637 27.848300955901788 22.0377749679918 66-67 21.97149768388576 28.242345998274924 27.711872159774874 22.07428415806444 68-69 21.97834438877052 28.192988858600305 27.75935872324139 22.069308029387788 70-71 21.977007920826203 27.95154345541017 27.812945151581292 22.258503472182333 72-73 22.02824975997288 27.931111469689974 27.731777418816804 22.30886135152034 74-75 21.935880997467546 28.09638840090347 27.655385457781023 22.31234514384796 76-77 22.1284596378498 27.988602246866783 27.551612310765904 22.331325804517512 78-79 22.632621315511287 27.954000139693935 27.133254199561108 22.28012434523367 80-81 22.124347934101227 28.060121866978278 27.473578719761594 22.341951479158904 82-83 22.16254369517715 28.0506821506206 27.529422443601664 22.257351710600588 84-85 22.247555355308727 28.004182910205845 27.522460948686327 22.225800785799105 86-87 22.097599341887904 28.080846504198615 27.55092867860468 22.2706254753088 88-89 22.195018315203647 28.100271592572806 27.488470718685537 22.21623937353801 90-91 22.245117362479842 28.116840676507305 27.540919668052044 22.097122292960808 92-93 22.28877101508547 28.09079248937087 27.51998021969191 22.10045627585175 94-95 22.17000732277215 28.177841974113853 27.584237302521508 22.067913400592488 96-97 22.21651599565471 28.22718010687874 27.724384613509446 21.831919283957106 98-99 23.348332880339264 30.064417417335964 27.923923567076425 18.663326135248344 100 22.292381971763113 30.971309025702332 21.86926887131227 24.867040131222286 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1152.0 1 1093.5 2 1524.0 3 2183.0 4 3022.0 5 4861.5 6 6395.0 7 7381.5 8 8029.5 9 8020.0 10 7614.0 11 7300.5 12 8237.5 13 10974.5 14 16816.5 15 24656.5 16 31305.5 17 35795.5 18 37108.0 19 35161.5 20 31797.0 21 28182.0 22 26145.0 23 27118.0 24 31283.0 25 38984.0 26 50119.0 27 62933.0 28 76096.5 29 90531.0 30 104505.0 31 118413.5 32 133482.0 33 148587.0 34 164137.5 35 178248.5 36 192254.5 37 205466.5 38 215049.0 39 223785.5 40 233613.0 41 242456.5 42 248523.5 43 253139.5 44 256479.0 45 259130.5 46 261255.5 47 262072.5 48 261714.5 49 255858.0 50 246487.0 51 236392.5 52 222948.5 53 206452.5 54 189560.5 55 172940.5 56 156418.0 57 139994.5 58 123230.5 59 106477.5 60 88264.5 61 70809.5 62 55650.0 63 42622.0 64 31771.5 65 23166.5 66 17233.0 67 13105.0 68 9766.0 69 6939.5 70 4882.5 71 3499.5 72 2413.0 73 1589.0 74 1033.0 75 703.5 76 460.5 77 281.0 78 171.0 79 116.5 80 89.5 81 64.0 82 47.5 83 33.0 84 20.0 85 13.5 86 11.0 87 10.0 88 7.5 89 4.5 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 2.553474544731448E-4 4 0.02409841601590304 5 0.016422033165804126 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008739673616689248 26-27 0.052124348625271204 28-29 0.08455488803845039 30-31 0.07471649215500811 32-33 0.035563730757824444 34-35 0.004234669334080603 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 4.3180711531764625E-4 56-57 8.941525996592683E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.013835448826846234 74-75 0.029094222675630253 76-77 0.001104171597099562 78-79 5.228848703905389 80-81 0.0 82-83 0.012630648268022356 84-85 0.04905972673484143 86-87 0.038323150746651324 88-89 0.009923581611291947 90-91 3.9336836016335014E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 66.0 20-21 258.0 22-23 758.0 24-25 1473.0 26-27 2265.0 28-29 3531.0 30-31 8550.0 32-33 11341.0 34-35 15687.0 36-37 22536.0 38-39 26430.0 40-41 30891.0 42-43 37705.0 44-45 45106.0 46-47 44627.0 48-49 39303.0 50-51 32834.0 52-53 29143.0 54-55 33033.0 56-57 35689.0 58-59 36382.0 60-61 39775.0 62-63 42964.0 64-65 45700.0 66-67 49099.0 68-69 48050.0 70-71 45870.0 72-73 45096.0 74-75 46323.0 76-77 47985.0 78-79 47746.0 80-81 49058.0 82-83 48083.0 84-85 48699.0 86-87 51159.0 88-89 54431.0 90-91 56527.0 92-93 59394.0 94-95 70521.0 96-97 204165.0 98-99 391379.0 100-101 4316340.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.06647282961883 #Duplication Level Percentage of deduplicated Percentage of total 1 90.58843530842314 78.87215541458507 2 6.896547357677915 12.009161062708875 3 1.500869373208261 3.9202620750973227 4 0.5018029823539754 1.747608629157764 5 0.20640032405538725 0.8985274103196448 6 0.1081413913670275 0.5649293707928684 7 0.06058743850784916 0.36925941980618954 8 0.03554276510553727 0.2475666553880628 9 0.024174766079851143 0.18943304526483754 >10 0.0760696770381448 0.9982941809231699 >50 8.585112905952404E-4 0.04846874854137345 >100 5.170440725630619E-4 0.09187785667599478 >500 2.6530411137475422E-5 0.015845977938352997 >1k 2.6530408574004428E-5 0.026610152800518636 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.595921590457155E-5 0.0 0.0 0.0 5 0.0 1.595921590457155E-5 0.0 0.0 0.0 6 0.0 1.595921590457155E-5 0.0 0.0 0.0 7 0.0 1.595921590457155E-5 0.0 0.0 0.0 8 0.0 1.595921590457155E-5 0.0 0.0 0.0 9 0.0 6.38368636182862E-5 0.0 1.595921590457155E-5 0.0 10-11 0.0 7.979607952285775E-5 0.0 1.595921590457155E-5 0.0 12-13 0.0 7.979607952285775E-5 0.0 1.595921590457155E-5 0.0 14-15 0.0 1.0373490337971508E-4 0.0 1.595921590457155E-5 7.979607952285774E-6 16-17 0.0 1.1171451133200085E-4 0.0 3.19184318091431E-5 1.595921590457155E-5 18-19 0.0 1.1171451133200085E-4 0.0 3.19184318091431E-5 1.595921590457155E-5 20-21 0.0 1.276737272365724E-4 0.0 3.9898039761428874E-5 1.595921590457155E-5 22-23 1.595921590457155E-5 1.6757176699800128E-4 0.0 7.181647157057197E-5 1.595921590457155E-5 24-25 1.595921590457155E-5 1.835309829025728E-4 0.0 9.57552954274293E-5 1.595921590457155E-5 26-27 1.595921590457155E-5 1.915105908548586E-4 0.0 1.1969411928428663E-4 1.595921590457155E-5 28-29 4.787764771371465E-5 1.915105908548586E-4 0.0 3.830211817097172E-4 3.19184318091431E-5 30-31 4.787764771371465E-5 2.0746980675943015E-4 0.0 0.0011011858974154369 3.19184318091431E-5 32-33 4.787764771371465E-5 2.0746980675943015E-4 0.0 0.0026651890560634487 3.19184318091431E-5 34-35 4.787764771371465E-5 2.2342902266400168E-4 0.0 0.004923418106560323 3.19184318091431E-5 36-37 4.787764771371465E-5 2.3938823856857323E-4 0.0 0.009096753065605784 4.787764771371465E-5 38-39 4.787764771371465E-5 2.3938823856857323E-4 0.0 0.02709874860596249 4.787764771371465E-5 40-41 4.787764771371465E-5 2.553474544731448E-4 0.0 0.045667296310931485 5.585725566600042E-5 42-43 4.787764771371465E-5 2.7130667037771636E-4 0.0 0.05372670034274012 6.38368636182862E-5 44-45 4.787764771371465E-5 3.431231419482883E-4 0.0 0.06378898597057249 6.38368636182862E-5 46-47 5.585725566600042E-5 4.069600055665745E-4 0.0 0.07615737829661542 7.181647157057197E-5 48-49 6.38368636182862E-5 4.149396135188603E-4 0.0 0.08894868984412953 7.979607952285775E-5 50-51 6.38368636182862E-5 4.3887843737571764E-4 0.0 0.10157242962464563 7.979607952285775E-5 52-53 6.38368636182862E-5 4.468580453280034E-4 0.0 0.17285426746241445 7.979607952285775E-5 54-55 6.38368636182862E-5 4.5483765328028917E-4 0.0 0.27129071116181175 7.979607952285775E-5 56-57 6.38368636182862E-5 4.6281726123257493E-4 0.0 0.37175397528108967 8.777568747514352E-5 58-59 6.38368636182862E-5 4.6281726123257493E-4 0.0 0.47354185432044704 9.57552954274293E-5 60-61 6.38368636182862E-5 4.6281726123257493E-4 0.0 0.5526277487355513 9.57552954274293E-5 62-63 7.979607952285775E-5 4.7877647713714646E-4 0.0 0.603633402766562 9.57552954274293E-5 64-65 7.979607952285775E-5 5.904909884691473E-4 0.0 0.6106793965884303 9.57552954274293E-5 66-67 7.979607952285775E-5 6.224094202782905E-4 0.0 0.6175578186433006 9.57552954274293E-5 68-69 7.979607952285775E-5 6.623074600397192E-4 0.0 0.623039809306521 9.57552954274293E-5 70-71 7.979607952285775E-5 6.782666759442908E-4 0.0 0.626917898771332 9.57552954274293E-5 72-73 7.979607952285775E-5 6.862462838965767E-4 0.0 0.6302773137192441 9.57552954274293E-5 74-75 7.979607952285775E-5 6.862462838965767E-4 0.0 0.6327190737526436 1.1171451133200085E-4 76-77 7.979607952285775E-5 6.862462838965767E-4 0.0 0.6351767930019476 1.1171451133200085E-4 78-79 7.979607952285775E-5 6.862462838965767E-4 0.0 0.6368525106719277 1.1171451133200085E-4 80-81 7.979607952285775E-5 6.862462838965767E-4 0.0 0.6375626957796812 1.1171451133200085E-4 82-83 7.979607952285775E-5 6.862462838965767E-4 0.0 0.6380813702965797 1.1171451133200085E-4 84-85 8.777568747514352E-5 7.022054998011482E-4 0.0 0.6383047993192437 1.1171451133200085E-4 86-87 9.57552954274293E-5 7.341239316102912E-4 0.0 0.6383207585351482 1.1969411928428663E-4 88 9.57552954274293E-5 7.660423634194344E-4 0.0 0.6383207585351482 1.276737272365724E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8100 0.0 51.834026 1 GTATCAA 14550 0.0 36.551006 1 TCAACGC 17370 0.0 29.972185 4 ATCAACG 17485 0.0 29.775293 3 CAACGCA 17850 0.0 29.15946 5 TATCAAC 18355 0.0 28.598597 2 AACGCAG 18345 0.0 28.460392 6 ACGCAGA 21045 0.0 24.78857 7 CGCAGAG 21285 0.0 24.488844 8 TGGTATC 3605 0.0 21.262293 2 GTGGTAT 3810 0.0 21.135475 1 GCAGAGT 25130 0.0 20.759071 9 GAGTACT 15365 0.0 20.211641 12-13 GTACATG 17585 0.0 19.198578 1 TACATGG 17220 0.0 19.08037 2 CAGAGTA 24610 0.0 19.028963 10-11 AGAGTAC 23050 0.0 18.262732 10-11 TATACCG 335 1.4006218E-10 17.9918 5 ACATGGG 17765 0.0 17.913258 3 GTACTTT 17280 0.0 17.797743 14-15 >>END_MODULE