##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138886_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6553826 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.847847501596775 33.0 33.0 33.0 33.0 33.0 2 32.84292304983379 33.0 33.0 33.0 33.0 33.0 3 32.84317374309297 33.0 33.0 33.0 33.0 33.0 4 36.7937735911817 37.0 37.0 37.0 37.0 37.0 5 36.8042264167526 37.0 37.0 37.0 37.0 37.0 6 36.8152518849295 37.0 37.0 37.0 37.0 37.0 7 36.80320792770513 37.0 37.0 37.0 37.0 37.0 8 36.80065369449845 37.0 37.0 37.0 37.0 37.0 9 36.79887519137676 37.0 37.0 37.0 37.0 37.0 10-11 36.78027826799186 37.0 37.0 37.0 37.0 37.0 12-13 36.76878505776625 37.0 37.0 37.0 37.0 37.0 14-15 39.157781805620104 40.0 40.0 40.0 37.0 40.0 16-17 39.12243596335942 40.0 40.0 40.0 37.0 40.0 18-19 39.09823841829185 40.0 40.0 40.0 37.0 40.0 20-21 39.14577124123986 40.0 40.0 40.0 37.0 40.0 22-23 39.17804779743582 40.0 40.0 40.0 37.0 40.0 24-25 39.18122107322219 40.0 40.0 40.0 37.0 40.0 26-27 38.92563297140711 40.0 40.0 40.0 37.0 40.0 28-29 38.933494982597196 40.0 40.0 40.0 37.0 40.0 30-31 38.95275743476451 40.0 40.0 40.0 37.0 40.0 32-33 38.944577156485295 40.0 40.0 40.0 37.0 40.0 34-35 38.92710519985937 40.0 40.0 40.0 37.0 40.0 36-37 38.896730559202496 40.0 40.0 40.0 37.0 40.0 38-39 38.86255476719711 40.0 40.0 40.0 37.0 40.0 40-41 38.81682534663659 40.0 40.0 40.0 37.0 40.0 42-43 38.75971726377104 40.0 37.0 40.0 37.0 40.0 44-45 38.6982770722784 40.0 37.0 40.0 37.0 40.0 46-47 38.630937298931464 40.0 37.0 40.0 37.0 40.0 48-49 38.57965400737873 40.0 37.0 40.0 37.0 40.0 50-51 38.536456267514794 40.0 37.0 40.0 37.0 40.0 52-53 38.4701895299153 40.0 37.0 40.0 37.0 40.0 54-55 38.39955002797652 40.0 37.0 40.0 37.0 40.0 56-57 38.3017105550098 40.0 37.0 40.0 37.0 40.0 58-59 38.17203721779799 40.0 37.0 40.0 37.0 40.0 60-61 38.0199500576621 40.0 37.0 40.0 37.0 40.0 62-63 37.83710255142903 40.0 37.0 40.0 35.0 40.0 64-65 37.62346495124072 37.0 37.0 40.0 33.0 40.0 66-67 37.39679571936041 37.0 37.0 40.0 33.0 40.0 68-69 37.14076553035344 37.0 37.0 40.0 33.0 40.0 70-71 36.88857887496007 37.0 37.0 40.0 33.0 40.0 72-73 36.643442193750225 37.0 37.0 38.5 33.0 40.0 74-75 36.37605254596036 37.0 37.0 37.0 33.0 40.0 76-77 34.678298005248095 37.0 33.0 37.0 30.0 37.0 78-79 31.426561168420236 37.0 33.0 37.0 8.5 37.0 80-81 34.58104779563301 37.0 33.0 37.0 30.0 37.0 82-83 35.63549533815421 37.0 35.0 37.0 33.0 37.0 84-85 35.75699986465888 37.0 37.0 37.0 33.0 37.0 86-87 35.720917504635295 37.0 37.0 37.0 33.0 37.0 88-89 35.64447792271716 37.0 37.0 37.0 33.0 37.0 90-91 35.582764933363336 37.0 37.0 37.0 33.0 37.0 92-93 35.51568855888617 37.0 35.0 37.0 33.0 37.0 94-95 35.46754074487899 37.0 33.0 37.0 33.0 37.0 96-97 35.44042015782743 37.0 33.0 37.0 33.0 37.0 98-99 35.403644606525276 37.0 33.0 37.0 33.0 37.0 100 35.35306168818022 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 14.0 21 69.0 22 302.0 23 975.0 24 2356.0 25 4997.0 26 9315.0 27 15628.0 28 23364.0 29 33481.0 30 46693.0 31 63846.0 32 86434.0 33 119904.0 34 175781.0 35 284709.0 36 635198.0 37 2058855.0 38 2853233.0 39 138666.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.7389476009891 20.104363466469817 14.500278158132366 23.65641077440872 2 14.408881163460855 21.116596626153942 41.802544040687074 22.67197816969813 3 17.8413134364796 26.176477768622785 30.877704537825384 25.104504257072236 4 12.287539404613554 18.286838878150366 39.37556994085206 30.050051776384016 5 13.200415461187252 37.74856479402898 35.705855188640804 13.345164556142963 6 29.49507661631542 38.142346165430695 19.03057847431409 13.3319987439398 7 26.098404199318075 33.08908414718365 23.23784610699155 17.574665546506726 8 24.257296425019522 36.40212602531712 21.453026064469825 17.887551485193534 9 25.556995257426728 16.984109739867982 21.417809993734956 36.04108500897033 10-11 23.835039257984572 26.855381879225966 29.229643875195954 20.079934987593507 12-13 24.863842891160065 24.54452559466791 29.183754649574155 21.40787686459787 14-15 22.051439876493518 25.94360912236608 27.038259789014845 24.966691212125557 16-17 21.44113224855222 28.99857274208989 27.657607937714552 21.902687071643342 18-19 21.48654083889319 28.143514948367564 29.42143261050873 20.948511602230514 20-21 22.29379806335534 27.27655997123437 29.416121951500497 21.013520013909798 22-23 21.99563156883171 27.165844657842975 29.252763574056367 21.585760199268947 24-25 21.742889650452206 27.33845679023652 29.33893424281333 21.57971931649794 26-27 21.750030436255024 27.48612267162649 29.178218059231625 21.585628832886858 28-29 21.612742875676137 27.58137566302578 29.229172117751222 21.57670934354686 30-31 21.950663666292957 27.384002316453742 29.13508987542176 21.53024414183154 32-33 21.74018285179399 27.55370711311173 29.04752913384198 21.658580901252293 34-35 21.83304974108296 27.65592393127167 29.01319874405857 21.4978275835868 36-37 21.831160441394974 27.544587841120784 28.998882200363063 21.625369517121182 38-39 21.739310297579838 27.693907232464284 28.974357209781232 21.592425260174647 40-41 21.988948077850893 27.570321087684217 28.840909769163048 21.59982106530184 42-43 21.905117232205132 27.625771816823054 28.638534314273812 21.830576636698 44-45 21.983905554731475 27.773618009502854 28.41824299576381 21.824233440001866 46-47 22.033957379759254 27.772038899669298 28.161777134578823 22.032226585992625 48-49 22.01423472222589 27.911768314158465 28.10673008646197 21.967266877153676 50-51 22.018852887020092 28.012638976231962 27.952887044267605 22.015621092480337 52-53 22.14906601203004 27.895172217014146 27.867822737436487 22.087939033519323 54-55 22.153256790562867 27.790040885510052 27.931122104384613 22.125580219542464 56-57 22.129724651184613 27.88392044714909 27.848599861982308 22.13775503968398 58-59 22.055037156659555 27.930096547552502 27.919266686323308 22.09559960946464 60-61 22.172261658597968 27.910359636246824 27.92715325826196 21.99022544689325 62-63 22.04385619857417 28.003872180863393 27.85839752018358 22.093874100378855 64-65 22.00392693630977 27.98197719117428 27.822063693098354 22.1920321794176 66-67 22.078662818834644 28.09756856821354 27.627416908857246 22.19635170409457 68-69 22.090961931541546 28.05458144857037 27.671987971834188 22.182468648053895 70-71 22.061641339806346 27.811056457678596 27.7207729878367 22.406529214678354 72-73 22.133427355536476 27.798011877463086 27.664679871337672 22.403880895662773 74-75 22.024412842473687 27.917033051929486 27.61991963631796 22.43863446927887 76-77 22.170417979286185 27.836446697539497 27.504134134985403 22.48900118818892 78-79 22.661694667484554 27.89646413871382 27.075341253025847 22.36649994077577 80-81 22.16107719251855 27.92734257134526 27.404720550441102 22.506859685695087 82-83 22.22671947041641 27.902561681750537 27.476757833183147 22.393961014649914 84-85 22.34771161128911 27.95461101229657 27.410279735826652 22.287397640587663 86-87 22.150082687668178 27.928258888318112 27.497119081806886 22.424539342206824 88-89 22.152930537017156 27.93880509626494 27.523431877529536 22.384832489188366 90-91 22.20333858583437 27.854009501763894 27.5419276599398 22.400724252461938 92-93 22.190036857143934 27.83126525892411 27.600918955643877 22.377778928288084 94-95 22.033904427550375 27.96644703507109 27.651146012217232 22.348502525161308 96-97 22.096187828245842 28.04039542286667 27.771192606523808 22.092224142363676 98-99 23.23058507543074 29.930174971461003 27.933482410598504 18.90575754250975 100 22.188803354584433 30.91965374353806 21.69396165803575 25.197581243841753 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1522.0 1 1358.0 2 1698.0 3 2357.5 4 3259.5 5 5296.0 6 7032.5 7 8283.0 8 9207.0 9 9397.5 10 8952.5 11 8393.5 12 9264.0 13 12204.0 14 18582.5 15 27079.5 16 34272.5 17 39027.5 18 40433.5 19 38617.5 20 35145.0 21 31367.0 22 29096.0 23 30023.5 24 34257.5 25 41977.0 26 52898.5 27 65668.0 28 78875.0 29 93093.0 30 107692.5 31 121967.5 32 137372.5 33 152774.5 34 168874.5 35 183954.0 36 199271.0 37 213521.5 38 223860.5 39 232687.5 40 242778.5 41 251815.5 42 257489.0 43 263780.5 44 268942.5 45 272358.5 46 274109.5 47 274654.0 48 272604.5 49 265389.5 50 256967.0 51 247154.0 52 234196.0 53 219792.5 54 204334.0 55 187875.5 56 170913.5 57 153246.0 58 135514.5 59 117401.0 60 97896.5 61 79236.5 62 62420.5 63 47613.5 64 35374.5 65 26284.0 66 19743.0 67 15060.5 68 11354.0 69 8023.5 70 5596.0 71 3942.5 72 2724.0 73 1839.0 74 1260.5 75 808.5 76 489.5 77 320.0 78 216.5 79 144.0 80 90.5 81 54.5 82 33.0 83 20.0 84 15.0 85 12.5 86 8.5 87 6.5 88 4.5 89 3.0 90 3.5 91 3.5 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 3.967148349681545E-4 4 0.024581061505142186 5 0.016906155274796737 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008730148070637276 26-27 0.05395417376144713 28-29 0.08716424239128642 30-31 0.07774114949118532 32-33 0.03661669404240568 34-35 0.004535735262256443 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.9130197662117427E-4 56-57 8.366626903315342E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.014029762477954632 74-75 0.028841490602209446 76-77 0.0010041432907144116 78-79 5.108473052844788 80-81 0.0 82-83 0.012892616754988713 84-85 0.051918784029582624 86-87 0.04045078526636781 88-89 0.010259845423981753 90-91 8.57576382422657E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 83.0 20-21 419.0 22-23 853.0 24-25 1874.0 26-27 2823.0 28-29 4445.0 30-31 10358.0 32-33 13840.0 34-35 18538.0 36-37 27059.0 38-39 31183.0 40-41 35888.0 42-43 43302.0 44-45 52239.0 46-47 51239.0 48-49 45329.0 50-51 37651.0 52-53 34184.0 54-55 37145.0 56-57 38601.0 58-59 41286.0 60-61 41482.0 62-63 45023.0 64-65 47847.0 66-67 50420.0 68-69 51307.0 70-71 50065.0 72-73 49188.0 74-75 50889.0 76-77 52262.0 78-79 52301.0 80-81 53407.0 82-83 52007.0 84-85 52395.0 86-87 55237.0 88-89 58905.0 90-91 61335.0 92-93 62805.0 94-95 73882.0 96-97 212829.0 98-99 406641.0 100-101 4445260.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.53475270527402 #Duplication Level Percentage of deduplicated Percentage of total 1 90.98631479043307 79.64464564744773 2 6.63628680614598 11.61811448914522 3 1.4276386519662894 3.749039890570797 4 0.466114688824732 1.6320493607427464 5 0.2001268676702319 0.8759027935597423 6 0.09709059575385802 0.5099280773593012 7 0.05712801515051863 0.35004806751206563 8 0.034914118892913744 0.2444959010570992 9 0.021603209142596703 0.17019284129437653 >10 0.07078922153634341 0.9859999471491117 >50 0.001422061978329313 0.08066983433970315 >100 5.207757971666266E-4 0.10235543588839714 >500 2.5098363642954496E-5 0.013818998254648359 >1k 2.5098344285064436E-5 0.022738715679156158 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5258262883390556E-5 2 0.0 3.0516525766781112E-5 0.0 0.0 1.5258262883390556E-5 3 0.0 3.0516525766781112E-5 0.0 0.0 1.5258262883390556E-5 4 0.0 7.629131441695278E-5 0.0 0.0 1.5258262883390556E-5 5 1.5258262883390556E-5 9.154957730034334E-5 0.0 0.0 1.5258262883390556E-5 6 4.577478865017167E-5 9.154957730034334E-5 0.0 0.0 1.5258262883390556E-5 7 6.1033051533562224E-5 1.2206610306712445E-4 0.0 3.0516525766781112E-5 1.5258262883390556E-5 8 6.1033051533562224E-5 1.37324365950515E-4 0.0 4.577478865017167E-5 1.5258262883390556E-5 9 6.1033051533562224E-5 2.2887394325085835E-4 0.0 1.068078401837339E-4 3.0516525766781112E-5 10-11 6.1033051533562224E-5 2.2887394325085835E-4 0.0 1.37324365950515E-4 3.0516525766781112E-5 12-13 7.629131441695278E-5 2.2887394325085835E-4 0.0 1.6021176027560083E-4 3.0516525766781112E-5 14-15 7.629131441695278E-5 3.5856917775967806E-4 0.0 1.6784089171729613E-4 5.3403920091866944E-5 16-17 9.154957730034334E-5 3.6619830920137336E-4 0.0 1.8309915460068668E-4 6.1033051533562224E-5 18-19 9.154957730034334E-5 3.6619830920137336E-4 0.0 2.4413220613424892E-4 6.1033051533562224E-5 20-21 9.917870874203861E-5 3.7382744064306866E-4 0.0 3.4331091487628757E-4 6.1033051533562224E-5 22-23 1.1443697162542918E-4 4.0434396640984976E-4 0.0 4.3486049217663085E-4 6.1033051533562224E-5 24-25 1.37324365950515E-4 4.7300614938510725E-4 0.0 5.340392009186695E-4 6.1033051533562224E-5 26-27 1.7547002315899138E-4 5.035226751518883E-4 0.0 6.484761725440986E-4 6.1033051533562224E-5 28-29 1.9835741748407723E-4 5.111518065935836E-4 0.0 9.002375101200429E-4 6.1033051533562224E-5 30-31 1.9835741748407723E-4 5.4929746380206E-4 0.0 0.0014571641053637984 6.1033051533562224E-5 32-33 1.9835741748407723E-4 5.645557266854506E-4 0.0 0.0026625668731516524 6.1033051533562224E-5 34-35 1.9835741748407723E-4 6.408470411024034E-4 0.0 0.0043409757903246134 6.1033051533562224E-5 36-37 2.0598654892577253E-4 7.247674869610514E-4 0.0 0.007240045738168819 6.1033051533562224E-5 38-39 2.5939046901763947E-4 7.858005384946136E-4 0.0 0.02620606650222328 7.629131441695278E-5 40-41 2.7464873190103E-4 9.30754035886824E-4 0.0 0.046034179119189306 7.629131441695278E-5 42-43 2.7464873190103E-4 9.765288245369957E-4 0.0 0.05095496889908276 7.629131441695278E-5 44-45 2.7464873190103E-4 0.0011138531904875107 0.0 0.05872905383817025 7.629131441695278E-5 46-47 2.7464873190103E-4 0.001205402767787854 0.0 0.0680137068027134 7.629131441695278E-5 48-49 2.8990699478442057E-4 0.0012282901621129398 0.0 0.07684061188075485 7.629131441695278E-5 50-51 3.051652576678111E-4 0.001396131053830236 0.0 0.08584298698195528 7.629131441695278E-5 52-53 3.051652576678111E-4 0.0014190184481553219 0.0 0.15830447741517703 7.629131441695278E-5 54-55 3.051652576678111E-4 0.0014342767110387122 0.0 0.25248610506290525 7.629131441695278E-5 56-57 3.051652576678111E-4 0.0014647932368054934 0.0 0.3515885224905269 7.629131441695278E-5 58-59 3.051652576678111E-4 0.0014953097625722746 0.0 0.4576334495300913 7.629131441695278E-5 60-61 3.127943891095064E-4 0.0015563428141058368 0.0 0.4910719326390417 7.629131441695278E-5 62-63 3.204235205512017E-4 0.0016326341285227896 0.0 0.5450404084575942 7.629131441695278E-5 64-65 3.204235205512017E-4 0.001724183705823133 0.0 0.5518379645721446 7.629131441695278E-5 66-67 3.204235205512017E-4 0.0017470711001482187 0.0 0.5568274165350133 7.629131441695278E-5 68-69 3.204235205512017E-4 0.001754700231589914 0.0 0.5611073592738043 7.629131441695278E-5 70-71 3.4331091487628757E-4 0.001754700231589914 0.0 0.5648990376003269 7.629131441695278E-5 72-73 3.814565720847639E-4 0.0017623293630316093 0.0 0.5683702924062983 9.154957730034334E-5 74-75 3.814565720847639E-4 0.0017928458887983903 0.0 0.5708268727305241 9.154957730034334E-5 76-77 3.814565720847639E-4 0.0018615080717736478 0.0 0.5734741813407924 9.154957730034334E-5 78-79 3.814565720847639E-4 0.001914911991865515 0.0 0.5752136233094989 9.154957730034334E-5 80-81 3.814565720847639E-4 0.0019225411233072102 0.0 0.5757476625104176 9.154957730034334E-5 82-83 3.814565720847639E-4 0.0019225411233072102 0.0 0.5761672647397109 9.154957730034334E-5 84-85 3.8908570352645915E-4 0.0019225411233072102 0.0 0.5763961386829617 9.154957730034334E-5 86-87 3.9671483496815446E-4 0.0019988324377241628 0.0 0.5764800591288203 9.154957730034334E-5 88 3.9671483496815446E-4 0.0020903820150245064 0.0 0.576487688260262 9.154957730034334E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9675 0.0 45.402935 1 GTATCAA 17165 0.0 36.327065 1 TCAACGC 20345 0.0 30.08026 4 ATCAACG 20470 0.0 29.938446 3 CAACGCA 20745 0.0 29.473528 5 TATCAAC 21385 0.0 28.938034 2 AACGCAG 21285 0.0 28.74153 6 ACGCAGA 23950 0.0 25.52547 7 CGCAGAG 24275 0.0 25.130787 8 GCAGAGT 28270 0.0 21.518791 9 GAGTACT 17250 0.0 20.054358 12-13 AGAGTAC 25015 0.0 19.771915 10-11 TACATGG 17975 0.0 19.335838 2 GTACATG 18555 0.0 19.331945 1 CAGAGTA 27125 0.0 19.142038 10-11 ACATGGG 18520 0.0 18.234602 3 GTACTTT 19060 0.0 18.16186 14-15 AGTACTT 18735 0.0 17.824516 12-13 CATGGGG 13255 0.0 16.198286 4 TGGTATC 4805 0.0 15.8758745 2 >>END_MODULE