##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138885_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7790218 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8483478896226 33.0 33.0 33.0 33.0 33.0 2 32.84395609981646 33.0 33.0 33.0 33.0 33.0 3 32.845042333860235 33.0 33.0 33.0 33.0 33.0 4 36.796238949924124 37.0 37.0 37.0 37.0 37.0 5 36.80756135450895 37.0 37.0 37.0 37.0 37.0 6 36.81703990825417 37.0 37.0 37.0 37.0 37.0 7 36.80331371984712 37.0 37.0 37.0 37.0 37.0 8 36.80191979223174 37.0 37.0 37.0 37.0 37.0 9 36.79975913382655 37.0 37.0 37.0 37.0 37.0 10-11 36.781768109698604 37.0 37.0 37.0 37.0 37.0 12-13 36.770806606438995 37.0 37.0 37.0 37.0 37.0 14-15 39.164908414629735 40.0 40.0 40.0 37.0 40.0 16-17 39.13122103900045 40.0 40.0 40.0 37.0 40.0 18-19 39.106956634589686 40.0 40.0 40.0 37.0 40.0 20-21 39.154894315927734 40.0 40.0 40.0 37.0 40.0 22-23 39.18576656942824 40.0 40.0 40.0 37.0 40.0 24-25 39.1905751034229 40.0 40.0 40.0 37.0 40.0 26-27 38.939198581174495 40.0 40.0 40.0 37.0 40.0 28-29 38.9460961710962 40.0 40.0 40.0 37.0 40.0 30-31 38.96349404523653 40.0 40.0 40.0 37.0 40.0 32-33 38.95418213553976 40.0 40.0 40.0 37.0 40.0 34-35 38.93646076924745 40.0 40.0 40.0 37.0 40.0 36-37 38.90683685026229 40.0 40.0 40.0 37.0 40.0 38-39 38.873442263439316 40.0 40.0 40.0 37.0 40.0 40-41 38.827138656221095 40.0 40.0 40.0 37.0 40.0 42-43 38.77331776100324 40.0 37.0 40.0 37.0 40.0 44-45 38.71149414322872 40.0 37.0 40.0 37.0 40.0 46-47 38.64343831034073 40.0 37.0 40.0 37.0 40.0 48-49 38.59565011040632 40.0 37.0 40.0 37.0 40.0 50-51 38.551794055725814 40.0 37.0 40.0 37.0 40.0 52-53 38.490191431159005 40.0 37.0 40.0 37.0 40.0 54-55 38.42288215556354 40.0 37.0 40.0 37.0 40.0 56-57 38.32799827545013 40.0 37.0 40.0 37.0 40.0 58-59 38.20414911312653 40.0 37.0 40.0 37.0 40.0 60-61 38.05630816823769 40.0 37.0 40.0 37.0 40.0 62-63 37.876999647719025 40.0 37.0 40.0 35.0 40.0 64-65 37.664028012434095 38.5 37.0 40.0 33.0 40.0 66-67 37.43845670537711 37.0 37.0 40.0 33.0 40.0 68-69 37.18428504314347 37.0 37.0 40.0 33.0 40.0 70-71 36.929068870269276 37.0 37.0 40.0 33.0 40.0 72-73 36.680963572643485 37.0 37.0 38.5 33.0 40.0 74-75 36.414874795432084 37.0 37.0 37.0 33.0 40.0 76-77 34.72373359303573 37.0 33.0 37.0 30.0 37.0 78-79 31.618182864801952 37.0 33.0 37.0 10.5 37.0 80-81 34.66726626398041 37.0 33.0 37.0 30.0 37.0 82-83 35.6742722966367 37.0 35.0 37.0 33.0 37.0 84-85 35.78337096726709 37.0 37.0 37.0 33.0 37.0 86-87 35.74339758376571 37.0 37.0 37.0 33.0 37.0 88-89 35.66427423112968 37.0 37.0 37.0 33.0 37.0 90-91 35.59718566966677 37.0 37.0 37.0 33.0 37.0 92-93 35.52860672382444 37.0 35.0 37.0 33.0 37.0 94-95 35.479145794975786 37.0 33.0 37.0 33.0 37.0 96-97 35.45482180562867 37.0 33.0 37.0 33.0 37.0 98-99 35.41590022584397 37.0 33.0 37.0 33.0 37.0 100 35.3659141482877 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 25.0 21 85.0 22 348.0 23 1113.0 24 2788.0 25 5767.0 26 10666.0 27 18024.0 28 27821.0 29 39914.0 30 55657.0 31 75454.0 32 102455.0 33 141514.0 34 206300.0 35 335354.0 36 739032.0 37 2422467.0 38 3447203.0 39 158229.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.557219579734486 20.309547178268954 14.516885150068969 23.616348091927595 2 14.284426956986312 21.231241539068613 41.98962082960965 22.49471067433543 3 17.70399922261193 26.416059995463527 30.918877577938098 24.96106320398645 4 12.091003905952581 18.484511969065668 39.700776889230596 29.723707235751156 5 13.065199601385242 37.861828785151936 35.850819376210524 13.222152237252299 6 29.160339287039207 38.47294132205286 19.22069446580314 13.14602492510479 7 25.90537260959834 33.1185212018457 23.503462932616262 17.472643255939694 8 24.02084254895049 36.573584975414036 21.641371268429204 17.764201207206266 9 25.4128831824732 17.055170984945477 21.592065844627196 35.93987998795413 10-11 23.62048148074932 27.063902447916092 29.41681477976611 19.89880129156848 12-13 24.706946583523077 24.67260864843577 29.361777809042056 21.258666958999093 14-15 21.850659378209954 26.069719743401276 27.216972618738012 24.862648259650758 16-17 21.26780662620738 29.150352403488576 27.830382923815485 21.75145804648856 18-19 21.296310321482657 28.272539998238816 29.626378876688687 20.804770803589836 20-21 22.07698014697392 27.470392732548945 29.58982847479946 20.862798645677678 22-23 21.721242050136702 27.40046731674546 29.457573779937217 21.420716853180622 24-25 21.573806863997934 27.490252078686556 29.531458358627837 21.404482698687673 26-27 21.579598473793315 27.70048810651578 29.33513863181112 21.384774787879785 28-29 21.442016098017884 27.80155555831331 29.397121327851462 21.359307015817347 30-31 21.787894480274637 27.622769092338253 29.277595409571767 21.311741017815347 32-33 21.553590136149946 27.714766866211715 29.232211899425998 21.49943109821234 34-35 21.655277877907704 27.810236935109423 29.20571222958549 21.328772957397383 36-37 21.693493622917092 27.719174036259947 29.151696043149293 21.435636297673668 38-39 21.54971207405712 27.849794709695647 29.187933573285147 21.41255964296209 40-41 21.798213152782992 27.75013701875627 29.00993332166994 21.441716506790794 42-43 21.72966890344786 27.835877641614637 28.799399864837138 21.635053590100366 44-45 21.826180855552035 27.96948919062373 28.578978138394252 21.625351815429983 46-47 21.857576592514736 27.980090839749067 28.28919758044355 21.873134987292648 48-49 21.82477277378308 28.052701053549633 28.311447776274186 21.811078396393096 50-51 21.887220092437158 28.198622303497935 28.098882192455022 21.815275411609893 52-53 22.00991898494912 28.139391671823276 28.018167615164042 21.83252172806357 54-55 22.009972970898627 28.04322774938664 28.023310708429104 21.923488571285628 56-57 22.02515650970061 28.16721228087407 27.950768240534106 21.85686296889121 58-59 21.938214794895075 28.2319931234703 28.013677113790685 21.816114967843937 60-61 22.059028763348117 28.18792408097429 27.95615732144431 21.796889834233284 62-63 21.951773609771358 28.269693662419463 27.92524343488613 21.853289292923044 64-65 21.93114764862089 28.230723698847292 27.91357505801852 21.924553594513295 66-67 22.031218195501655 28.21982531141971 27.790882433682697 21.958074059395933 68-69 21.97977179825646 28.224225516209273 27.833770121299683 21.962232564234583 70-71 22.014548990942426 27.98106721921646 27.911085205733134 22.093298584107984 72-73 22.0394307939171 28.04500790531702 27.873179731165436 22.04238156960044 74-75 21.941272054190122 28.176840428983894 27.770313401947956 22.111574114878028 76-77 22.01968498848847 28.131499120249764 27.719454757944064 22.1293611333177 78-79 22.50039911519412 28.054226085479744 27.368570465726304 22.076804333599828 80-81 21.994539656554032 28.137677790136827 27.71540261296575 22.15237994034339 82-83 22.052502958710456 28.130669029135763 27.782895904729184 22.033932107424604 84-85 22.164287398737056 28.09666041147128 27.737223316292475 22.00182887349919 86-87 21.992129322764427 28.1287919452045 27.783481372316 22.095597359715068 88-89 22.066715167524087 28.09673542543126 27.781087332658977 22.055462074385677 90-91 22.085260879049105 28.11180427105044 27.787817406730742 22.01511744316971 92-93 22.08599780547102 28.093405336833104 27.794617905730878 22.025978951964994 94-95 21.982751633441364 28.177638739184484 27.78574185033431 22.05386777703984 96-97 22.06240165639282 28.282856536101818 27.87137494892879 21.78336685857657 98-99 23.145434886647642 30.18798411826222 28.06836591807434 18.59821507701579 100 22.087436351975477 31.17339007174278 21.952860678939466 24.786312897342277 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1645.0 1 1519.5 2 2038.0 3 2923.5 4 4129.0 5 6660.5 6 8689.0 7 10033.0 8 10997.5 9 11052.0 10 10452.0 11 9813.0 12 10926.5 13 14524.5 14 22436.0 15 33004.0 16 41900.5 17 47728.5 18 49108.0 19 46364.5 20 41735.0 21 37131.0 22 34832.0 23 36353.0 24 41586.0 25 50927.0 26 64711.0 27 81210.0 28 97715.0 29 115543.5 30 133992.5 31 151973.0 32 170870.5 33 189115.5 34 207257.0 35 224277.0 36 242267.5 37 259855.0 38 271211.5 39 280487.5 40 292041.0 41 301893.0 42 308675.5 43 314321.5 44 318201.0 45 321487.0 46 322920.0 47 322237.5 48 317689.5 49 307957.5 50 298054.0 51 284949.5 52 267076.0 53 248845.5 54 229758.0 55 209854.5 56 190337.5 57 170650.5 58 150139.5 59 128787.5 60 106705.0 61 86007.0 62 67859.5 63 51662.5 64 38143.0 65 28086.5 66 20988.0 67 16004.5 68 11897.0 69 8453.0 70 6094.0 71 4363.5 72 3100.0 73 2243.0 74 1535.5 75 993.5 76 665.0 77 418.0 78 261.0 79 172.5 80 109.5 81 75.0 82 57.5 83 43.5 84 28.5 85 18.0 86 12.5 87 10.0 88 8.5 89 6.0 90 3.5 91 2.0 92 1.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.7226172618019164E-4 4 0.023734894196799115 5 0.015968744392005463 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008429542252101479 26-27 0.05195253554702938 28-29 0.08428406408646971 30-31 0.07441755436422885 32-33 0.0358140681935402 34-35 0.0041871086601794226 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.8170774682688393E-4 56-57 8.230786874199557E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.013058747431398156 74-75 0.027254087344039748 76-77 9.083592535738766E-4 78-79 4.896124858469924 80-81 0.0 82-83 0.012192032703762947 84-85 0.04842706520585749 86-87 0.038398579260288786 88-89 0.009497550715790162 90-91 2.3641192887310707E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 101.0 20-21 507.0 22-23 1065.0 24-25 1924.0 26-27 3012.0 28-29 4791.0 30-31 10493.0 32-33 14064.0 34-35 19036.0 36-37 27506.0 38-39 33680.0 40-41 37829.0 42-43 46032.0 44-45 55917.0 46-47 55172.0 48-49 47915.0 50-51 42733.0 52-53 41984.0 54-55 44989.0 56-57 47470.0 58-59 47870.0 60-61 48059.0 62-63 48387.0 64-65 51039.0 66-67 54866.0 68-69 55384.0 70-71 54658.0 72-73 53471.0 74-75 55769.0 76-77 58814.0 78-79 57624.0 80-81 58884.0 82-83 59032.0 84-85 59269.0 86-87 62355.0 88-89 66121.0 90-91 69938.0 92-93 72713.0 94-95 86705.0 96-97 251511.0 98-99 489767.0 100-101 5391762.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.8139014356334 #Duplication Level Percentage of deduplicated Percentage of total 1 90.16997322801917 77.3783719504294 2 6.988799879838424 11.994723680836422 3 1.5864608417635113 4.084211829197579 4 0.5735368531214454 1.9686973993386825 5 0.25871497962035733 1.1100670880531622 6 0.13341905813007304 0.6869525942405478 7 0.08320785856260683 0.4998273681353167 8 0.05460877413683506 0.3748953569039304 9 0.03746537856469653 0.2893545273059604 >10 0.1121204753213765 1.4541046405840439 >50 0.0012512718990189886 0.07070283971197354 >100 3.945889093709241E-4 0.059729862322713635 >500 4.681211303695081E-5 0.028360862940276156 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2836611247592815E-5 0.0 2 0.0 2.567322249518563E-5 0.0 2.567322249518563E-5 0.0 3 0.0 2.567322249518563E-5 0.0 2.567322249518563E-5 0.0 4 0.0 1.0269288998074252E-4 0.0 3.8509833742778444E-5 1.2836611247592815E-5 5 0.0 1.1552950122833532E-4 0.0 3.8509833742778444E-5 1.2836611247592815E-5 6 0.0 1.1552950122833532E-4 0.0 3.8509833742778444E-5 1.2836611247592815E-5 7 0.0 1.1552950122833532E-4 0.0 5.134644499037126E-5 1.2836611247592815E-5 8 0.0 1.1552950122833532E-4 0.0 5.134644499037126E-5 1.2836611247592815E-5 9 0.0 1.4120272372352097E-4 0.0 1.1552950122833532E-4 1.2836611247592815E-5 10-11 0.0 1.4120272372352097E-4 0.0 1.2194780685213173E-4 1.2836611247592815E-5 12-13 0.0 1.5403933497111377E-4 0.0 1.2836611247592813E-4 1.2836611247592815E-5 14-15 0.0 1.797125574662994E-4 0.0 1.2836611247592813E-4 1.2836611247592815E-5 16-17 0.0 1.8613086309009582E-4 0.0 1.2836611247592813E-4 1.2836611247592815E-5 18-19 0.0 2.0538577996148503E-4 0.0 1.5403933497111377E-4 2.567322249518563E-5 20-21 0.0 2.1822239120907784E-4 0.0 1.9896747433768863E-4 2.567322249518563E-5 22-23 0.0 2.8882375307083834E-4 0.0 2.4389561370426348E-4 2.567322249518563E-5 24-25 0.0 3.2733358681361676E-4 0.0 2.6956883619944907E-4 2.567322249518563E-5 26-27 0.0 3.4658850368500597E-4 0.0 2.9524205869463474E-4 2.567322249518563E-5 28-29 0.0 3.5942511493259883E-4 0.0 4.043532542991736E-4 2.567322249518563E-5 30-31 6.418305623796407E-6 3.8509833742778445E-4 0.0 6.418305623796408E-4 2.567322249518563E-5 32-33 1.2836611247592815E-5 4.0435325429917366E-4 0.0 0.0012900794303830777 2.567322249518563E-5 34-35 1.2836611247592815E-5 4.8779122740852697E-4 0.0 0.002471047665161617 2.567322249518563E-5 36-37 1.2836611247592815E-5 5.776475061416767E-4 0.0 0.004024277626120348 3.209152811898203E-5 38-39 1.2836611247592815E-5 6.289939511320479E-4 0.0 0.006476070374410574 3.8509833742778444E-5 40-41 1.2836611247592815E-5 6.546671736272335E-4 0.0 0.009088320763295712 3.8509833742778444E-5 42-43 1.2836611247592815E-5 7.060136186176048E-4 0.0 0.011963721682756504 3.8509833742778444E-5 44-45 1.9254916871389222E-5 8.279614254697366E-4 0.0 0.01493539718657424 4.4928139366574854E-5 46-47 2.567322249518563E-5 8.857261760839042E-4 0.0 0.0187542890327331 5.776475061416766E-5 48-49 2.567322249518563E-5 8.921444817077005E-4 0.0 0.02229077543144492 6.418305623796407E-5 50-51 3.209152811898203E-5 9.948373716884432E-4 0.0 0.025801588607661557 6.418305623796407E-5 52-53 3.8509833742778444E-5 0.0010140922885598324 0.0 0.02954987909195866 7.060136186176047E-5 54-55 3.8509833742778444E-5 0.0010333472054312215 0.0 0.033330261104374745 7.701966748555689E-5 56-57 3.8509833742778444E-5 0.0010654387335502036 0.0 0.03726468245176194 7.701966748555689E-5 58-59 3.8509833742778444E-5 0.0010911119560453892 0.0 0.04142374449598202 7.701966748555689E-5 60-61 4.4928139366574854E-5 0.0011167851785405748 0.0 0.046044924545115426 7.701966748555689E-5 62-63 6.418305623796407E-5 0.001136040095411964 0.0 0.050711032733615415 8.98562787331497E-5 64-65 6.418305623796407E-5 0.0012066414572737246 0.0 0.05579433078766217 8.98562787331497E-5 66-67 7.701966748555689E-5 0.001213059762897521 0.0 0.06054387694927151 8.98562787331497E-5 68-69 7.701966748555689E-5 0.0012772428191354852 0.0 0.06472861221598677 8.98562787331497E-5 70-71 7.701966748555689E-5 0.001309334347254467 0.0 0.06846406608903627 8.98562787331497E-5 72-73 7.701966748555689E-5 0.00132217095850206 0.0 0.07135872192536846 8.98562787331497E-5 74-75 7.701966748555689E-5 0.0013285892641258564 0.0 0.07379767806241108 8.98562787331497E-5 76-77 8.343797310935329E-5 0.0013606807922448383 0.0 0.0762815623388203 8.98562787331497E-5 78-79 8.98562787331497E-5 0.0013863540147400239 0.0 0.07786046552227421 8.98562787331497E-5 80-81 8.98562787331497E-5 0.0013991906259876168 0.0 0.0784445313340397 9.627458435694611E-5 82-83 8.98562787331497E-5 0.001418445542859006 0.0 0.07870768186461534 1.1552950122833532E-4 84-85 8.98562787331497E-5 0.001450537070977988 0.0 0.07891306764457683 1.1552950122833532E-4 86-87 8.98562787331497E-5 0.00148262859909697 0.0 0.078970832395191 1.1552950122833532E-4 88 8.98562787331497E-5 0.0015275567384635449 0.0 0.078970832395191 1.1552950122833532E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11210 0.0 47.726517 1 GTATCAA 20400 0.0 37.39347 1 TCAACGC 23590 0.0 31.842834 4 ATCAACG 23735 0.0 31.70304 3 CAACGCA 24185 0.0 31.01559 5 AACGCAG 24925 0.0 30.210478 6 TATCAAC 25015 0.0 30.184307 2 ACGCAGA 27845 0.0 26.964977 7 CGCAGAG 28320 0.0 26.604074 8 GCAGAGT 33070 0.0 22.665434 9 GAGTACT 21035 0.0 20.99452 12-13 TACATGG 20145 0.0 19.982878 2 AGAGTAC 29405 0.0 19.865812 10-11 GTACATG 21000 0.0 19.847303 1 CAGAGTA 31810 0.0 19.807745 10-11 ACATGGG 20535 0.0 19.267187 3 GTACTTT 23555 0.0 18.712671 14-15 AGTACTT 22795 0.0 17.992413 12-13 TATACCG 525 0.0 17.25387 5 GTGGTAT 5870 0.0 16.832205 1 >>END_MODULE