##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138882_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5490898 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.851258573734206 33.0 33.0 33.0 33.0 33.0 2 32.84828474322415 33.0 33.0 33.0 33.0 33.0 3 32.84890103585971 33.0 33.0 33.0 33.0 33.0 4 36.79792285342033 37.0 37.0 37.0 37.0 37.0 5 36.80673999043508 37.0 37.0 37.0 37.0 37.0 6 36.817915211683044 37.0 37.0 37.0 37.0 37.0 7 36.805604839135604 37.0 37.0 37.0 37.0 37.0 8 36.7923796799722 37.0 37.0 37.0 37.0 37.0 9 36.79167633418068 37.0 37.0 37.0 37.0 37.0 10-11 36.783210232643185 37.0 37.0 37.0 37.0 37.0 12-13 36.770860158028796 37.0 37.0 37.0 37.0 37.0 14-15 39.1632806692093 40.0 40.0 40.0 37.0 40.0 16-17 39.12939049313974 40.0 40.0 40.0 37.0 40.0 18-19 39.09191502009325 40.0 40.0 40.0 37.0 40.0 20-21 39.140990707945264 40.0 40.0 40.0 37.0 40.0 22-23 39.1800312161787 40.0 40.0 40.0 37.0 40.0 24-25 39.18571432302879 40.0 40.0 40.0 37.0 40.0 26-27 38.90981409542076 40.0 40.0 40.0 37.0 40.0 28-29 38.927060918459674 40.0 40.0 40.0 37.0 40.0 30-31 38.94324547510489 40.0 40.0 40.0 37.0 40.0 32-33 38.93826002850663 40.0 40.0 40.0 37.0 40.0 34-35 38.919635156498174 40.0 40.0 40.0 37.0 40.0 36-37 38.891105289601995 40.0 40.0 40.0 37.0 40.0 38-39 38.85303918696325 40.0 40.0 40.0 37.0 40.0 40-41 38.81451654420831 40.0 40.0 40.0 37.0 40.0 42-43 38.76272790317638 40.0 37.0 40.0 37.0 40.0 44-45 38.69875225500353 40.0 37.0 40.0 37.0 40.0 46-47 38.62832661376724 40.0 37.0 40.0 37.0 40.0 48-49 38.57913264342447 40.0 37.0 40.0 37.0 40.0 50-51 38.527021125322776 40.0 37.0 40.0 37.0 40.0 52-53 38.45753427522278 40.0 37.0 40.0 37.0 40.0 54-55 38.38802991269577 40.0 37.0 40.0 37.0 40.0 56-57 38.28724027707604 40.0 37.0 40.0 37.0 40.0 58-59 38.15614465216841 40.0 37.0 40.0 37.0 40.0 60-61 38.00397150450599 40.0 37.0 40.0 37.0 40.0 62-63 37.82346706798161 40.0 37.0 40.0 35.0 40.0 64-65 37.6136983160283 37.0 37.0 40.0 33.0 40.0 66-67 37.39110587211331 37.0 37.0 40.0 33.0 40.0 68-69 37.13820540637699 37.0 37.0 40.0 33.0 40.0 70-71 36.890158458892984 37.0 37.0 40.0 33.0 40.0 72-73 36.64935752202757 37.0 37.0 38.5 33.0 40.0 74-75 36.385828537422725 37.0 37.0 37.0 33.0 40.0 76-77 34.711208953865906 37.0 33.0 37.0 30.0 37.0 78-79 30.83170633337032 37.0 33.0 37.0 8.5 37.0 80-81 34.400433011429016 37.0 33.0 37.0 30.0 37.0 82-83 35.60480702105842 37.0 35.0 37.0 33.0 37.0 84-85 35.75902634078018 37.0 37.0 37.0 33.0 37.0 86-87 35.727492129168674 37.0 37.0 37.0 33.0 37.0 88-89 35.648462667158256 37.0 37.0 37.0 33.0 37.0 90-91 35.5826643818594 37.0 37.0 37.0 33.0 37.0 92-93 35.51656948661111 37.0 35.0 37.0 33.0 37.0 94-95 35.47561493448397 37.0 33.0 37.0 33.0 37.0 96-97 35.45343408371696 37.0 33.0 37.0 33.0 37.0 98-99 35.41338308063767 37.0 33.0 37.0 33.0 37.0 100 35.36308816395186 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 1.0 17 1.0 18 0.0 19 4.0 20 13.0 21 54.0 22 258.0 23 840.0 24 1999.0 25 4154.0 26 7778.0 27 12868.0 28 19883.0 29 28802.0 30 39593.0 31 53758.0 32 73388.0 33 102338.0 34 149234.0 35 245512.0 36 551746.0 37 1766450.0 38 2326662.0 39 105561.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.80835265925537 20.069194510624673 14.441535792506071 23.680917037613884 2 14.37538996353602 20.9768420393167 41.805912256975084 22.84185574017219 3 17.892260778220205 26.32002328220863 30.636811386427844 25.150904553143317 4 12.453235765337677 18.305530280052572 39.02989431651852 30.21133963809123 5 13.241748964061037 37.77389836368184 35.51793851561773 13.4664141566394 6 29.441905495239578 38.12981046087543 18.979919131624737 13.448364912260253 7 26.110410355464627 33.13095599299058 22.95589901688212 17.802734634662674 8 24.207370087734283 36.39579536899065 21.527079905691203 17.86975463758387 9 25.343723376394898 17.036903617586777 21.296407254332532 36.322965751685786 10-11 23.808537328502553 26.886103147426887 29.046578537791085 20.258780986279476 12-13 24.976151441895297 24.438188434751474 29.05384510875999 21.531815014593242 14-15 22.04429038747396 25.932588804235664 26.871151130470828 25.151969677819547 16-17 21.609762191903766 28.990039516304982 27.382415408190063 22.01778288360119 18-19 21.642980802047315 28.05633067669441 29.187320543925605 21.11336797733267 20-21 22.321640697145305 27.163344405564 29.297901830956658 21.217113066334033 22-23 21.932485600468237 27.186612850009457 29.251337273383875 21.629564276138428 24-25 21.796237312779034 27.313909448946927 29.2233358057931 21.666517432480944 26-27 21.914005173799936 27.44644351388157 29.004490158294942 21.63506115402355 28-29 21.618131644596005 27.543158289569657 29.280344894144385 21.558365171689957 30-31 22.205672929565278 27.403246198979826 28.945789975875275 21.44529089557962 32-33 21.64242619071595 27.772306260623846 28.9457837325429 21.639483816117306 34-35 21.868784492078614 27.78614254496951 28.927775368883484 21.41729759406839 36-37 21.83643909103411 27.70936989408054 28.86442423451257 21.58976678037278 38-39 21.71662563807945 27.66229269190105 28.959149544013247 21.661932126006253 40-41 21.983395499315176 27.480778669018203 28.865278156072367 21.670547675594253 42-43 21.955532489960223 27.5295927176348 28.68789322816615 21.82698156423883 44-45 21.981221018425316 27.71874492837101 28.4650166654315 21.83501738777218 46-47 22.146523495403912 27.646703187324434 28.08564867459958 22.121124642672076 48-49 22.04517562108386 27.745446305392452 28.125280276796843 22.084097796726844 50-51 22.037651813948887 27.91049315172446 28.007764457800615 22.044090576526035 52-53 22.16670738012056 27.912854899659408 27.98100295786856 21.939434762351475 54-55 22.151066019882574 27.77878750955651 27.88897267239296 22.18117379816796 56-57 22.230617469282862 28.001909081133213 27.728212967739026 22.039260481844895 58-59 22.08945711137831 28.099390632412945 27.87326073959765 21.937891516611092 60-61 22.227901050356667 28.120630978069055 27.727680044529755 21.923787927044522 62-63 22.085457867680265 28.229227412150195 27.699940488117065 21.985374232052482 64-65 22.0875200437779 28.11898460661964 27.66258311312465 22.130912236477805 66-67 22.1773743926275 28.1033105213015 27.582390838538394 22.13692424753261 68-69 22.171853119119024 28.023309846630745 27.662678963229116 22.142158071021118 70-71 22.177875733496315 27.805619215443084 27.710307051627286 22.30619799943332 72-73 22.2274471317946 27.85779653530697 27.652308421347506 22.26244791155092 74-75 22.127798003065926 27.983557960679693 27.612249302546793 22.276394733707583 76-77 22.206397095557612 27.96953331937102 27.543204477365492 22.28086510770588 78-79 22.782937084503722 27.857705107606417 27.090862561555056 22.268495246334805 80-81 22.227446943757982 27.973831874830847 27.50698869130495 22.29173249010622 82-83 22.232528203099577 27.93622245494025 27.58859328307606 22.242656058884112 84-85 22.33283836838008 27.930748780343023 27.523378375763556 22.21303447551334 86-87 22.20024148658311 27.964459599312296 27.573516515445235 22.261782398659356 88-89 22.267960937555685 27.902865980997998 27.559497081275257 22.26967600017106 90-91 22.284771979629483 27.92706922629593 27.553492647824307 22.234666146250284 92-93 22.27298445997279 27.908776366813647 27.570347539628457 22.247891633585105 94-95 22.201040739457014 27.97114533158457 27.595590157308493 22.232223771649924 96-97 22.257607259267154 28.095748038134804 27.617991487996363 22.028653214601675 98-99 23.344158547545106 30.006132207146614 27.831868698385254 18.817840546923026 100 22.243856995472854 31.057577625672344 21.753830705383642 24.94473467347116 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1291.0 1 1148.0 2 1432.0 3 1974.5 4 2697.5 5 4354.5 6 5726.0 7 6710.5 8 7486.5 9 7631.5 10 7284.0 11 6978.0 12 7808.5 13 10313.0 14 15864.5 15 23155.0 16 29187.0 17 33090.0 18 34162.0 19 32337.5 20 29072.0 21 25622.0 22 23571.5 23 24471.5 24 28105.0 25 34571.5 26 43589.0 27 53928.5 28 64519.0 29 76331.5 30 88700.0 31 101065.0 32 114165.0 33 126795.0 34 139058.0 35 151053.0 36 164967.5 37 178892.5 38 188938.0 39 195982.5 40 203818.0 41 210208.5 42 212980.0 43 215799.0 44 219331.5 45 224891.5 46 229090.5 47 230724.5 48 229014.5 49 223034.5 50 216336.5 51 207509.5 52 196085.0 53 183526.0 54 170845.5 55 157604.0 56 143460.5 57 128669.5 58 113963.0 59 99177.5 60 82879.5 61 66953.0 62 52916.0 63 40682.5 64 30116.0 65 22037.5 66 16483.0 67 12521.5 68 9491.5 69 6864.5 70 4792.0 71 3298.5 72 2255.0 73 1574.0 74 1075.0 75 713.0 76 437.0 77 244.0 78 150.5 79 102.5 80 71.0 81 52.5 82 42.5 83 27.5 84 18.5 85 16.5 86 11.5 87 7.0 88 3.5 89 3.0 90 2.5 91 1.5 92 1.5 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 1.8211957315542921E-4 4 0.02536925654055129 5 0.01731957140708132 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008370380692929079 26-27 0.0512468471800796 28-29 0.08217517019265229 30-31 0.0722698761314573 32-33 0.033853257001211626 34-35 0.004091444049090738 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 4.1681554089958875E-4 56-57 7.806445430702086E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.0299562783559837E-5 72-73 0.013765839539726802 74-75 0.02680867521195805 76-77 7.280044532770963E-4 78-79 5.717890374746175 80-81 0.0 82-83 0.0122277550978854 84-85 0.04706200646083659 86-87 0.036366395069166724 88-89 0.008953161601894329 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 75.0 20-21 311.0 22-23 631.0 24-25 1276.0 26-27 2075.0 28-29 3277.0 30-31 7367.0 32-33 10101.0 34-35 14251.0 36-37 22538.0 38-39 28163.0 40-41 29103.0 42-43 32188.0 44-45 39750.0 46-47 39333.0 48-49 34357.0 50-51 30138.0 52-53 29753.0 54-55 33284.0 56-57 35679.0 58-59 36274.0 60-61 36222.0 62-63 37173.0 64-65 39801.0 66-67 42573.0 68-69 40851.0 70-71 38798.0 72-73 37648.0 74-75 39306.0 76-77 40723.0 78-79 40265.0 80-81 40942.0 82-83 40608.0 84-85 41063.0 86-87 43551.0 88-89 46604.0 90-91 48991.0 92-93 49892.0 94-95 59938.0 96-97 177312.0 98-99 342385.0 100-101 3776328.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.38365155935077 #Duplication Level Percentage of deduplicated Percentage of total 1 91.57784609791635 80.9398444007409 2 6.265571094906186 11.075481049450564 3 1.311940633640625 3.478623114907405 4 0.41199989973646456 1.4565622232318052 5 0.18253648304375406 0.8066620457104249 6 0.08921005138973279 0.47308260585731504 7 0.04573974126222128 0.28298517478945173 8 0.03254911370550035 0.2301447619450105 9 0.018796213045204995 0.14951501499804493 >10 0.061687726855498275 0.8406782779753967 >50 0.001295387424006251 0.07363126628526656 >100 7.694691688046456E-4 0.1522569681906911 >500 2.904395682097036E-5 0.014785983127120166 >1k 2.904394877365812E-5 0.02574711279063588 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.4635871946628766E-5 0.0 0.0 0.0 3 0.0 5.4635871946628766E-5 0.0 0.0 0.0 4 0.0 1.0927174389325753E-4 0.0 0.0 1.821195731554292E-5 5 0.0 1.0927174389325753E-4 0.0 0.0 1.821195731554292E-5 6 3.642391463108584E-5 1.0927174389325753E-4 0.0 0.0 1.821195731554292E-5 7 3.642391463108584E-5 1.0927174389325753E-4 0.0 0.0 1.821195731554292E-5 8 3.642391463108584E-5 1.0927174389325753E-4 0.0 1.821195731554292E-5 1.821195731554292E-5 9 3.642391463108584E-5 1.639076158398863E-4 0.0 3.642391463108584E-5 1.821195731554292E-5 10-11 5.4635871946628766E-5 1.639076158398863E-4 0.0 7.284782926217168E-5 1.821195731554292E-5 12-13 5.4635871946628766E-5 1.639076158398863E-4 0.0 7.284782926217168E-5 1.821195731554292E-5 14-15 5.4635871946628766E-5 2.549674024176009E-4 0.0 1.0016576523548608E-4 3.642391463108584E-5 16-17 6.374185060440023E-5 2.7317935973314385E-4 0.0 1.0927174389325753E-4 3.642391463108584E-5 18-19 7.284782926217168E-5 3.0049729570645823E-4 0.0 1.365896798665719E-4 3.642391463108584E-5 20-21 7.284782926217168E-5 3.278152316797726E-4 0.0 1.5480163718211483E-4 4.5529893288857304E-5 22-23 9.105978657771461E-5 3.278152316797726E-4 0.0 1.639076158398863E-4 6.374185060440023E-5 24-25 9.105978657771461E-5 3.733451249686299E-4 0.0 1.639076158398863E-4 9.105978657771461E-5 26-27 9.105978657771461E-5 4.006630609419443E-4 0.0 2.3675544510205797E-4 9.105978657771461E-5 28-29 9.105978657771461E-5 4.006630609419443E-4 0.0 4.0976903959971575E-4 9.105978657771461E-5 30-31 9.105978657771461E-5 4.5529893288857306E-4 0.0 9.652337377237749E-4 1.0016576523548608E-4 32-33 9.105978657771461E-5 4.5529893288857306E-4 0.0 0.002149010963234065 1.0927174389325753E-4 34-35 9.105978657771461E-5 5.463587194662876E-4 0.0 0.003533119719215327 1.0927174389325753E-4 36-37 9.105978657771461E-5 6.374185060440022E-4 0.0 0.005946204063524764 1.2748370120880046E-4 38-39 9.105978657771461E-5 6.465244847017737E-4 0.0 0.00947021780408232 1.2748370120880046E-4 40-41 9.105978657771461E-5 6.920543779906311E-4 0.0 0.013094397309875362 1.2748370120880046E-4 42-43 9.105978657771461E-5 7.011603566484026E-4 0.0 0.017410631193659033 1.2748370120880046E-4 44-45 1.0016576523548608E-4 7.375842712794884E-4 0.0 0.02187256073596705 1.2748370120880046E-4 46-47 1.0927174389325753E-4 7.649022072528027E-4 0.0 0.026944590848345752 1.365896798665719E-4 48-49 1.0927174389325753E-4 7.649022072528027E-4 0.0 0.032207846512537656 1.4569565852434337E-4 50-51 1.0927174389325753E-4 8.286440578572029E-4 0.0 0.037707857621831625 1.4569565852434337E-4 52-53 1.0927174389325753E-4 8.377500365149744E-4 0.0 0.042962007307365754 1.5480163718211483E-4 54-55 1.0927174389325753E-4 8.377500365149744E-4 0.0 0.048698773861761774 1.639076158398863E-4 56-57 1.0927174389325753E-4 8.559619938305174E-4 0.0 0.052942159916283274 1.639076158398863E-4 58-59 1.0927174389325753E-4 8.559619938305174E-4 0.0 0.05725839380006695 1.639076158398863E-4 60-61 1.456956585243434E-4 8.832799298038316E-4 0.0 0.06221204618989462 1.639076158398863E-4 62-63 2.0033153047097215E-4 9.197038444349176E-4 0.0 0.0665282800736783 1.639076158398863E-4 64-65 2.094375091287436E-4 9.834456950393179E-4 0.0 0.07100842157330185 1.639076158398863E-4 66-67 2.36755445102058E-4 9.834456950393179E-4 0.0 0.07566157666742307 1.7301359449765777E-4 68-69 2.36755445102058E-4 9.834456950393179E-4 0.0 0.07943145183174045 1.8211957315542921E-4 70-71 2.36755445102058E-4 0.0010016576523548607 0.0 0.08269139219122264 1.8211957315542921E-4 72-73 2.36755445102058E-4 0.0010198696096704036 0.0 0.08512268849284763 1.8211957315542921E-4 74-75 2.36755445102058E-4 0.0010562935243014896 0.0 0.08769968045299695 1.8211957315542921E-4 76-77 2.4586142375982947E-4 0.0011109293962481182 0.0 0.0902675664344885 1.8211957315542921E-4 78-79 2.549674024176009E-4 0.0011291413535636612 0.0 0.09162435725449644 1.8211957315542921E-4 80-81 2.549674024176009E-4 0.0011291413535636612 0.0 0.0921433980379894 1.8211957315542921E-4 82-83 2.549674024176009E-4 0.0011291413535636612 0.0 0.09245300131235365 2.0033153047097215E-4 84-85 2.549674024176009E-4 0.0011655652681947471 0.0 0.09265333284282462 2.0033153047097215E-4 86-87 2.549674024176009E-4 0.0012202011401413757 0.0 0.09273528665074456 2.0033153047097215E-4 88 2.7317935973314385E-4 0.0012384130974569187 0.0 0.09273528665074456 2.0033153047097215E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7765 0.0 48.987747 1 GTATCAA 13845 0.0 36.66423 1 TCAACGC 16185 0.0 30.672905 4 ATCAACG 16255 0.0 30.593702 3 CAACGCA 16705 0.0 29.760893 5 TATCAAC 17115 0.0 29.433123 2 AACGCAG 17225 0.0 28.882658 6 ACGCAGA 19660 0.0 25.349087 7 CGCAGAG 19900 0.0 25.04337 8 CTCGTAT 4205 0.0 21.455624 9 GTGGTAT 3730 0.0 21.318102 1 GCAGAGT 23460 0.0 21.224785 9 CTTATAC 3585 0.0 21.22119 1 AATCTCG 4350 0.0 21.036728 6 TCTCGTA 4320 0.0 20.785015 8 GAGTACT 14345 0.0 20.335604 12-13 TGGTATC 3740 0.0 19.537228 2 GTACATG 15195 0.0 19.376507 1 TACATGG 14900 0.0 19.26974 2 ATCTCGT 4660 0.0 19.268513 7 >>END_MODULE