##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138881_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6421055 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84523758167466 33.0 33.0 33.0 33.0 33.0 2 32.84277879569635 33.0 33.0 33.0 33.0 33.0 3 32.84409555750574 33.0 33.0 33.0 33.0 33.0 4 36.794604624940916 37.0 37.0 37.0 37.0 37.0 5 36.80329307255583 37.0 37.0 37.0 37.0 37.0 6 36.81405703579863 37.0 37.0 37.0 37.0 37.0 7 36.799669991925 37.0 37.0 37.0 37.0 37.0 8 36.79794800075688 37.0 37.0 37.0 37.0 37.0 9 36.797204042014904 37.0 37.0 37.0 37.0 37.0 10-11 36.777880581929296 37.0 37.0 37.0 37.0 37.0 12-13 36.76674635242962 37.0 37.0 37.0 37.0 37.0 14-15 39.1556155491582 40.0 40.0 40.0 37.0 40.0 16-17 39.11778858770093 40.0 40.0 40.0 37.0 40.0 18-19 39.089756434106235 40.0 40.0 40.0 37.0 40.0 20-21 39.13714532721221 40.0 40.0 40.0 37.0 40.0 22-23 39.17141756699908 40.0 40.0 40.0 37.0 40.0 24-25 39.17715755827354 40.0 40.0 40.0 37.0 40.0 26-27 38.92037392560441 40.0 40.0 40.0 37.0 40.0 28-29 38.92723472557212 40.0 40.0 40.0 37.0 40.0 30-31 38.94982188049849 40.0 40.0 40.0 37.0 40.0 32-33 38.93960711176493 40.0 40.0 40.0 37.0 40.0 34-35 38.92141342893831 40.0 40.0 40.0 37.0 40.0 36-37 38.890917755634916 40.0 40.0 40.0 37.0 40.0 38-39 38.85136099619497 40.0 40.0 40.0 37.0 40.0 40-41 38.808674920257204 40.0 40.0 40.0 37.0 40.0 42-43 38.756360934380616 40.0 37.0 40.0 37.0 40.0 44-45 38.69133995191298 40.0 37.0 40.0 37.0 40.0 46-47 38.62306526699014 40.0 37.0 40.0 37.0 40.0 48-49 38.56933753794394 40.0 37.0 40.0 37.0 40.0 50-51 38.515719216723134 40.0 37.0 40.0 37.0 40.0 52-53 38.449186871953394 40.0 37.0 40.0 37.0 40.0 54-55 38.378557211255895 40.0 37.0 40.0 37.0 40.0 56-57 38.27977480460021 40.0 37.0 40.0 37.0 40.0 58-59 38.14801578945471 40.0 37.0 40.0 37.0 40.0 60-61 37.99329905403986 40.0 37.0 40.0 37.0 40.0 62-63 37.80981791371078 40.0 37.0 40.0 33.0 40.0 64-65 37.59757059011597 37.0 37.0 40.0 33.0 40.0 66-67 37.37366918567649 37.0 37.0 40.0 33.0 40.0 68-69 37.11676170260135 37.0 37.0 40.0 33.0 40.0 70-71 36.863120453048275 37.0 37.0 40.0 33.0 40.0 72-73 36.61877703437418 37.0 37.0 38.5 33.0 40.0 74-75 36.35301829715201 37.0 37.0 37.0 33.0 40.0 76-77 34.65636002685416 35.0 33.0 37.0 30.0 37.0 78-79 31.471273757718055 37.0 33.0 37.0 8.5 37.0 80-81 34.586372453719065 37.0 33.0 37.0 30.0 37.0 82-83 35.62618762204022 37.0 35.0 37.0 33.0 37.0 84-85 35.748260031167376 37.0 37.0 37.0 33.0 37.0 86-87 35.708144953343904 37.0 37.0 37.0 33.0 37.0 88-89 35.62907262655381 37.0 37.0 37.0 33.0 37.0 90-91 35.56344633554655 37.0 37.0 37.0 33.0 37.0 92-93 35.49174332878823 37.0 33.0 37.0 33.0 37.0 94-95 35.44538546952067 37.0 33.0 37.0 33.0 37.0 96-97 35.42042214541511 37.0 33.0 37.0 33.0 37.0 98-99 35.38069110722571 37.0 33.0 37.0 33.0 37.0 100 35.333599181375014 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 16.0 21 79.0 22 297.0 23 932.0 24 2371.0 25 5064.0 26 9255.0 27 15449.0 28 23058.0 29 33501.0 30 46545.0 31 63217.0 32 85870.0 33 119099.0 34 173440.0 35 283852.0 36 633153.0 37 2037620.0 38 2762406.0 39 125830.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.56136335851352 20.18534337425859 14.465146303839477 23.788146963388414 2 14.367311913696426 21.04780289220385 41.85914931424821 22.72573587985152 3 17.80273186402757 26.229579427746643 30.829272592573442 25.138416115652344 4 12.28078866000981 18.343475014670037 39.191456967290684 30.18427935802947 5 13.29421083005387 37.635469131254574 35.66403764483049 13.406282393861064 6 29.48988912258188 38.07838431535005 19.028368391175594 13.40335817089248 7 26.120676430898037 32.949414076035794 23.18156440024264 17.74834509282353 8 24.249846793089297 36.39401936286171 21.54228549669797 17.81384834735102 9 25.476171750592385 16.95816341707087 21.344202782876025 36.22146204946072 10-11 23.787446143974783 26.848866736073745 29.20312939228834 20.160557727663132 12-13 24.81369494576826 24.460879092298697 29.139845399237352 21.585580562695693 14-15 22.039594739493744 25.85076751406116 26.861395829813013 25.24824191663208 16-17 21.544021971467306 29.013518806488964 27.503587806053677 21.938871415990054 18-19 21.608240390403136 28.065894156022647 29.19704783715449 21.12881761641973 20-21 22.330761855874332 27.242883921262766 29.221437880239563 21.204916342623335 22-23 21.982939143016676 27.27638385837962 29.052962014906836 21.687714983696868 24-25 21.837031864919236 27.403017338745983 29.114887068677316 21.645063727657462 26-27 21.879010171800893 27.542613099365155 28.9874928823896 21.59088384644435 28-29 21.631712407045388 27.55128236430524 29.087106947405307 21.729898281244065 30-31 22.039641384239413 27.35767896578353 29.075094473738094 21.52758517623896 32-33 21.77238595592705 27.586349712104457 28.943717228697828 21.69754710327066 34-35 21.86881874061376 27.663934698897158 28.97142356651529 21.495822993973785 36-37 21.997179174677463 27.52897757992463 28.78101999417501 21.692823251222897 38-39 21.76019319750939 27.614944441927484 28.893806373075265 21.73105598748786 40-41 22.031754318989957 27.497943394653802 28.77539352538765 21.694908760968595 42-43 22.001150234482196 27.527645843614412 28.60472770398384 21.866476217919555 44-45 21.974814709247443 27.72347581992709 28.41724026668097 21.88446920414449 46-47 22.133261100372785 27.676022265519695 28.056882811109784 22.133833822997733 48-49 22.083873125526168 27.730502267309998 28.08700679742128 22.098617809742557 50-51 22.05909582857447 27.90836364004981 27.98025446605611 22.05228606531961 52-53 22.195582037872146 27.89142611977986 27.90964669031065 22.00334515203734 54-55 22.149464771067127 27.805329370028588 27.880778614365774 22.164427244538512 56-57 22.21878441593563 27.971199250506423 27.727515588152546 22.0825007454054 58-59 22.09477469712126 28.05713212464124 27.867359695599426 21.980733482638083 60-61 22.266302617047888 28.08926393960499 27.68501583828657 21.95941760506055 62-63 22.118383083148856 28.20502155222827 27.651685369365005 22.02490999525787 64-65 22.140713916990546 28.119042560294226 27.648031194603817 22.09221232811141 66-67 22.220474649718057 28.03793803228886 27.58938322049824 22.15220409749484 68-69 22.216436590473556 27.975494527696913 27.6536656141543 22.154403267675228 70-71 22.218177151817294 27.774641920445514 27.69375320812561 22.31342771961158 72-73 22.241208557692683 27.805943681032876 27.634464077278274 22.31838368399617 74-75 22.116730553952753 27.973215490927096 27.596413164166695 22.313640790953457 76-77 22.23579659584608 27.907684413284024 27.532828175716755 22.323690815153142 78-79 22.736294533959015 27.862401531290715 27.1145850141526 22.286718920597675 80-81 22.217670815441952 27.951334525924093 27.53104112880264 22.29995352983131 82-83 22.24461318378296 27.919114364772348 27.568086643680967 22.268185807763725 84-85 22.33508190392774 27.905708232692987 27.538372136218637 22.22083772716064 86-87 22.197832419893064 27.8901931457602 27.622838800946 22.28913563340074 88-89 22.2683329277886 27.90220029649932 27.552813762543245 22.27665301316884 90-91 22.29402022660283 27.935011670672193 27.52540432258791 22.245563780137065 92-93 22.291059271413282 27.900020053273305 27.552051069002694 22.25686960631072 94-95 22.19005617532877 27.979118725257067 27.559143374167412 22.271681725246747 96-97 22.283175927373158 28.079791286726852 27.628708535122065 22.00832425077793 98-99 23.387181237889678 29.980167366286985 27.822259221137053 18.81039217468628 100 22.311014161271295 30.989678521408383 21.716633431891633 24.982673885428692 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1350.0 1 1197.5 2 1579.0 3 2283.0 4 3132.0 5 4935.0 6 6396.5 7 7410.5 8 8154.0 9 8216.0 10 7862.5 11 7597.5 12 8452.0 13 11042.0 14 17021.5 15 25028.5 16 31829.5 17 36191.0 18 37177.5 19 35297.0 20 31818.5 21 28019.5 22 26104.5 23 27400.5 24 31911.5 25 39810.5 26 50718.5 27 63339.0 28 76177.0 29 90147.0 30 104742.0 31 119028.5 32 133712.0 33 148562.0 34 164084.5 35 178474.5 36 192990.0 37 206873.0 38 217232.0 39 226282.5 40 236305.0 41 245265.5 42 251354.0 43 256676.5 44 260282.5 45 264182.0 46 267880.5 47 269796.5 48 267915.0 49 261786.0 50 254349.5 51 242953.0 52 229034.0 53 213650.0 54 197899.5 55 182544.0 56 166746.0 57 150349.0 58 133280.0 59 115478.0 60 96493.5 61 78217.0 62 61687.0 63 47373.0 64 35162.5 65 25823.0 66 19404.0 67 14745.0 68 11043.0 69 7919.5 70 5611.5 71 3963.5 72 2759.5 73 1885.5 74 1239.5 75 780.5 76 503.5 77 332.5 78 213.5 79 137.5 80 96.5 81 60.5 82 37.0 83 26.0 84 22.0 85 18.0 86 13.5 87 10.5 88 7.5 89 5.0 90 3.5 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 2.803277654528734E-4 4 0.023485237239051836 5 0.016352452984750947 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008505229314067275 26-27 0.05197196645685189 28-29 0.08431550084132342 30-31 0.07442136046708628 32-33 0.0359647236367991 34-35 0.0041951847262716325 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 4.1355477040803875E-4 56-57 8.575939444209184E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.013299398160146551 74-75 0.026828765759778765 76-77 8.194988125372151E-4 78-79 5.024848947757799 80-81 0.0 82-83 0.01198370327315067 84-85 0.04804532941557101 86-87 0.037434050260673174 88-89 0.009175023702936883 90-91 4.804325122517497E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 53.0 20-21 311.0 22-23 733.0 24-25 1533.0 26-27 2392.0 28-29 4008.0 30-31 8647.0 32-33 11591.0 34-35 15682.0 36-37 23246.0 38-39 28509.0 40-41 30953.0 42-43 37376.0 44-45 45975.0 46-47 44936.0 48-49 39832.0 50-51 35679.0 52-53 35100.0 54-55 38882.0 56-57 41708.0 58-59 42589.0 60-61 42635.0 62-63 43637.0 64-65 46469.0 66-67 49941.0 68-69 48136.0 70-71 46232.0 72-73 44535.0 74-75 46177.0 76-77 47611.0 78-79 47478.0 80-81 49151.0 82-83 47767.0 84-85 48459.0 86-87 50862.0 88-89 54322.0 90-91 57082.0 92-93 59185.0 94-95 71056.0 96-97 208199.0 98-99 401314.0 100-101 4421072.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.93036982821788 #Duplication Level Percentage of deduplicated Percentage of total 1 91.19019299531516 80.18387394784625 2 6.511651002993054 11.451437617709304 3 1.3751615672567739 3.627553955473195 4 0.4548363621724921 1.5997571814859395 5 0.19565384207136574 0.8601957345823462 6 0.09496823657158311 0.5010355298203794 7 0.05555638564951063 0.34195654755363963 8 0.03144126483828741 0.2211713636078044 9 0.02249326294375176 0.17800568363586972 >10 0.0665942129167435 0.88031770231804 >50 9.846859865040316E-4 0.057263480105221774 >100 4.4104797978229265E-4 0.0835083768109067 >500 2.513330497861056E-5 0.013922879051180085 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5573764747381857E-5 2 0.0 0.0 0.0 0.0 1.5573764747381857E-5 3 0.0 0.0 0.0 0.0 1.5573764747381857E-5 4 0.0 0.0 0.0 0.0 3.1147529494763714E-5 5 0.0 1.5573764747381857E-5 0.0 0.0 3.1147529494763714E-5 6 3.1147529494763714E-5 1.5573764747381857E-5 0.0 0.0 3.1147529494763714E-5 7 3.1147529494763714E-5 3.1147529494763714E-5 0.0 4.6721294242145564E-5 3.1147529494763714E-5 8 3.1147529494763714E-5 6.229505898952743E-5 0.0 4.6721294242145564E-5 4.6721294242145564E-5 9 3.1147529494763714E-5 1.0901635323167298E-4 0.0 4.6721294242145564E-5 6.229505898952743E-5 10-11 4.6721294242145564E-5 1.0901635323167298E-4 0.0 9.344258848429113E-5 6.229505898952743E-5 12-13 7.786882373690927E-5 1.0901635323167298E-4 0.0 9.344258848429113E-5 6.229505898952743E-5 14-15 8.56557061106002E-5 1.2459011797905485E-4 0.0 9.344258848429113E-5 6.229505898952743E-5 16-17 1.1680323560536393E-4 1.401638827264367E-4 0.0 1.0901635323167298E-4 7.786882373690927E-5 18-19 1.2459011797905485E-4 1.6352452984750947E-4 0.0 1.0901635323167298E-4 7.786882373690927E-5 20-21 1.2459011797905485E-4 1.8688517696858226E-4 0.0 1.2459011797905485E-4 7.786882373690927E-5 22-23 1.3237700035274578E-4 2.1024582408965504E-4 0.0 1.401638827264367E-4 9.344258848429113E-5 24-25 1.7909829459489133E-4 2.4139335358441875E-4 0.0 1.713114122212004E-4 1.0901635323167298E-4 26-27 2.024589417159641E-4 2.491802359581097E-4 0.0 2.1803270646334597E-4 1.0901635323167298E-4 28-29 2.024589417159641E-4 2.491802359581097E-4 0.0 3.659834715634736E-4 1.0901635323167298E-4 30-31 2.1024582408965504E-4 2.803277654528734E-4 0.0 5.995899427742014E-4 1.0901635323167298E-4 32-33 2.3360647121072783E-4 2.959015302002553E-4 0.0 0.0012147536502957847 1.0901635323167298E-4 34-35 2.4139335358441875E-4 3.5040970681609175E-4 0.0 0.002297130300238824 1.0901635323167298E-4 36-37 2.491802359581097E-4 4.127047658056192E-4 0.0 0.003994670657703446 1.0901635323167298E-4 38-39 2.491802359581097E-4 4.28278530553001E-4 0.0 0.0068991777830901616 1.0901635323167298E-4 40-41 2.491802359581097E-4 4.3606541292669194E-4 0.0 0.010200815909535116 1.0901635323167298E-4 42-43 2.491802359581097E-4 4.438522953003829E-4 0.0 0.013292208211890415 1.0901635323167298E-4 44-45 2.6475400070549157E-4 5.061473542899103E-4 0.0 0.01628237104338773 1.0901635323167298E-4 46-47 2.803277654528734E-4 5.606555309057468E-4 0.0 0.01997335328851723 1.0901635323167298E-4 48-49 2.803277654528734E-4 5.606555309057468E-4 0.0 0.023882368240110075 1.0901635323167298E-4 50-51 2.881146478265643E-4 6.229505898952742E-4 0.0 0.027908186427308287 1.0901635323167298E-4 52-53 3.114752949476371E-4 6.229505898952742E-4 0.0 0.03163810308430624 1.3237700035274576E-4 54-55 3.114752949476371E-4 6.307374722689652E-4 0.0 0.03574957697761505 1.5573764747381854E-4 56-57 3.114752949476371E-4 6.540981193900379E-4 0.0 0.04035162446046639 1.5573764747381854E-4 58-59 3.114752949476371E-4 6.774587665111107E-4 0.0 0.044852442472459744 1.5573764747381854E-4 60-61 3.114752949476371E-4 7.008194136321835E-4 0.0 0.04912744089561606 1.5573764747381854E-4 62-63 3.426228244424008E-4 7.008194136321835E-4 0.0 0.05396309484967813 1.5573764747381854E-4 64-65 3.426228244424008E-4 7.942620021164746E-4 0.0 0.058526207920661016 1.5573764747381854E-4 66-67 3.5819658918978265E-4 8.254095316112384E-4 0.0 0.06299587840315961 1.5573764747381854E-4 68-69 3.5819658918978265E-4 8.409832963586202E-4 0.0 0.06718522112020534 1.5573764747381854E-4 70-71 3.5819658918978265E-4 8.565570611060021E-4 0.0 0.07109423607179817 1.5573764747381854E-4 72-73 3.5819658918978265E-4 8.565570611060021E-4 0.0 0.07407661202092179 1.713114122212004E-4 74-75 3.5819658918978265E-4 8.799177082270749E-4 0.0 0.07659177502762396 1.713114122212004E-4 76-77 3.5819658918978265E-4 9.422127672166023E-4 0.0 0.0787876758570048 1.713114122212004E-4 78-79 3.5819658918978265E-4 9.499996495902932E-4 0.0 0.08023603597851131 1.713114122212004E-4 80-81 3.5819658918978265E-4 9.577865319639841E-4 0.0 0.08082783903891183 1.713114122212004E-4 82-83 3.6598347156347355E-4 9.65573414337675E-4 0.0 0.08121718315759638 1.713114122212004E-4 84-85 3.737703539371645E-4 9.65573414337675E-4 0.0 0.08138849456981757 1.713114122212004E-4 86-87 3.737703539371645E-4 9.811471790850568E-4 0.0 0.08147415027592816 1.713114122212004E-4 88 3.737703539371645E-4 9.811471790850568E-4 0.0 0.08149751092304924 1.713114122212004E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8175 0.0 50.98725 1 GTATCAA 14735 0.0 37.37614 1 TCAACGC 17610 0.0 30.687277 4 ATCAACG 17635 0.0 30.643772 3 CAACGCA 17995 0.0 29.998388 5 TATCAAC 18465 0.0 29.616138 2 AACGCAG 18635 0.0 29.104008 6 ACGCAGA 21445 0.0 25.23021 7 CGCAGAG 21735 0.0 24.873772 8 CTTATAC 4295 0.0 22.557621 1 GCAGAGT 25935 0.0 20.829033 9 GTGGTAT 4115 0.0 20.405102 1 TGGTATC 3755 0.0 20.18258 2 GTACATG 17800 0.0 20.102728 1 GAGTACT 15805 0.0 19.990017 12-13 TATACAC 6300 0.0 19.61622 3 TACATGG 17555 0.0 19.500254 2 ACATGGG 17700 0.0 19.121557 3 CAGAGTA 25005 0.0 18.918316 10-11 AGAGTAC 23030 0.0 18.7184 10-11 >>END_MODULE