##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138880_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6228226 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84656786699776 33.0 33.0 33.0 33.0 33.0 2 32.84166085174173 33.0 33.0 33.0 33.0 33.0 3 32.84247296100045 33.0 33.0 33.0 33.0 33.0 4 36.7928390845162 37.0 37.0 37.0 37.0 37.0 5 36.803714733537284 37.0 37.0 37.0 37.0 37.0 6 36.814521984269675 37.0 37.0 37.0 37.0 37.0 7 36.800748078184704 37.0 37.0 37.0 37.0 37.0 8 36.79806272283633 37.0 37.0 37.0 37.0 37.0 9 36.7976992164382 37.0 37.0 37.0 37.0 37.0 10-11 36.77884384734915 37.0 37.0 37.0 37.0 37.0 12-13 36.76735301512822 37.0 37.0 37.0 37.0 37.0 14-15 39.15695143368272 40.0 40.0 40.0 37.0 40.0 16-17 39.12236750882194 40.0 40.0 40.0 37.0 40.0 18-19 39.09396712643375 40.0 40.0 40.0 37.0 40.0 20-21 39.1432648923205 40.0 40.0 40.0 37.0 40.0 22-23 39.174325863411354 40.0 40.0 40.0 37.0 40.0 24-25 39.18046834892477 40.0 40.0 40.0 37.0 40.0 26-27 38.92355176243731 40.0 40.0 40.0 37.0 40.0 28-29 38.93412074891861 40.0 40.0 40.0 37.0 40.0 30-31 38.95741955711874 40.0 40.0 40.0 37.0 40.0 32-33 38.95215077330198 40.0 40.0 40.0 37.0 40.0 34-35 38.93497224849786 40.0 40.0 40.0 37.0 40.0 36-37 38.90594379862922 40.0 40.0 40.0 37.0 40.0 38-39 38.87502207985905 40.0 40.0 40.0 37.0 40.0 40-41 38.82901622946444 40.0 40.0 40.0 37.0 40.0 42-43 38.77464437052494 40.0 37.0 40.0 37.0 40.0 44-45 38.71403160066015 40.0 37.0 40.0 37.0 40.0 46-47 38.6470110575545 40.0 37.0 40.0 37.0 40.0 48-49 38.59744021063551 40.0 37.0 40.0 37.0 40.0 50-51 38.55702716744017 40.0 37.0 40.0 37.0 40.0 52-53 38.49240555075963 40.0 37.0 40.0 37.0 40.0 54-55 38.423275886354716 40.0 37.0 40.0 37.0 40.0 56-57 38.32834674879952 40.0 37.0 40.0 37.0 40.0 58-59 38.200767966924815 40.0 37.0 40.0 37.0 40.0 60-61 38.05153446477367 40.0 37.0 40.0 37.0 40.0 62-63 37.87067843283065 40.0 37.0 40.0 35.0 40.0 64-65 37.65822289104115 37.0 37.0 40.0 33.0 40.0 66-67 37.43435057227577 37.0 37.0 40.0 33.0 40.0 68-69 37.17817728883733 37.0 37.0 40.0 33.0 40.0 70-71 36.92285511768182 37.0 37.0 40.0 33.0 40.0 72-73 36.675949567502556 37.0 37.0 38.5 33.0 40.0 74-75 36.405323635495876 37.0 37.0 37.0 33.0 40.0 76-77 34.71411747246371 37.0 33.0 37.0 30.0 37.0 78-79 31.434931091515217 37.0 33.0 37.0 8.5 37.0 80-81 34.6060545301901 37.0 33.0 37.0 30.0 37.0 82-83 35.658867785360385 37.0 35.0 37.0 33.0 37.0 84-85 35.77726852674162 37.0 37.0 37.0 33.0 37.0 86-87 35.7383438428024 37.0 37.0 37.0 33.0 37.0 88-89 35.65848893362167 37.0 37.0 37.0 33.0 37.0 90-91 35.58876259474998 37.0 37.0 37.0 33.0 37.0 92-93 35.520250075246054 37.0 35.0 37.0 33.0 37.0 94-95 35.47531472814978 37.0 33.0 37.0 33.0 37.0 96-97 35.44931225071235 37.0 33.0 37.0 33.0 37.0 98-99 35.409725644975666 37.0 33.0 37.0 33.0 37.0 100 35.35829217122593 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 14.0 21 65.0 22 289.0 23 847.0 24 2250.0 25 4640.0 26 8451.0 27 14260.0 28 21760.0 29 31627.0 30 44078.0 31 60302.0 32 82228.0 33 113772.0 34 166173.0 35 269804.0 36 598190.0 37 1942828.0 38 2732684.0 39 133959.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.612298590320904 20.461010888172652 14.166281056596212 23.760409464910232 2 14.215974179485457 21.38414694649809 42.01822477219035 22.381654101826108 3 17.476840850530362 26.809252356376025 31.05342660360733 24.660480189486286 4 11.984354087379042 18.51287386366228 40.04705786373165 29.455714185227023 5 12.90011560630521 38.10808731865154 36.03102790369107 12.960769171352183 6 28.886893314404453 38.75183720051263 19.417326860007968 12.943942625074941 7 25.62073052583513 33.19307937765906 23.98246306412131 17.203727032384503 8 23.94686705331502 36.6276689381535 21.908437490868184 17.517026517663297 9 25.535473504012216 16.739854976360846 21.706951546074276 36.017719973552666 10-11 23.555198542891667 26.94280040576562 29.791420542542934 19.710580508799776 12-13 24.64807795991989 24.665651182214646 29.582300000032113 21.103970857833353 14-15 21.835671987496923 26.00395361375775 27.31435082798858 24.846023570756746 16-17 21.316142028243675 28.997815750423957 27.915228188572478 21.77081403275989 18-19 21.334518047354095 28.269221444436987 29.576142548456012 20.820117959752906 20-21 22.157478123979676 27.51181558384611 29.433289507835404 20.89741678433881 22-23 21.80884749708964 27.430765525269962 29.294191321103124 21.466195656537273 24-25 21.598656035513557 27.517191037131678 29.391313216159375 21.492839711195394 26-27 21.688468840792723 27.673602399768686 29.190647022396416 21.44728173704217 28-29 21.539220325363566 27.766897941813106 29.248189038079175 21.44569269474415 30-31 21.846516700813464 27.60147851512093 29.153064749778512 21.398940034287094 32-33 21.630216881244927 27.79189931487272 29.060710829625624 21.51717297425673 34-35 21.746708597106593 27.79226582857431 29.042601916564966 21.418423657754136 36-37 21.771977860815856 27.720975333936256 29.009272075969672 21.497774729278216 38-39 21.633137973258986 27.857848879316442 29.05763047724395 21.451382670180617 40-41 21.906798566207133 27.74066287044914 28.870647324143334 21.481891239200397 42-43 21.814979929755374 27.840246071159974 28.68974229251243 21.65503170657222 44-45 21.909099310165193 27.95245226194646 28.48525304775246 21.653195380135887 46-47 21.915195044972098 27.94141119564814 28.212620215332805 21.930773544046957 48-49 21.882263802833915 28.00731654380072 28.234904346979018 21.87551530638635 50-51 21.912951720118613 28.173670894151797 28.05761709791752 21.855760287812064 52-53 22.054961914758373 28.101251378895707 27.9551370397133 21.88864966663262 54-55 22.054812937912928 27.97433143057849 28.003467257344088 21.96738837416449 56-57 22.051761214482656 28.086450645819923 27.954774031820456 21.907014107876968 58-59 22.007937949741674 28.115185476579185 27.97583493858203 21.901041635097112 60-61 22.06750229844379 28.117934280292754 27.940617038188094 21.87394638307536 62-63 22.00735782046198 28.185274433879528 27.904584606371536 21.902783139286957 64-65 22.01486424132108 28.10703761158708 27.878644140006315 21.99945400708552 66-67 22.104249659767103 28.120241207675022 27.746334902560164 22.029174229997707 68-69 22.036050452407828 28.130509284468502 27.812263221810905 22.021177041312765 70-71 22.05828445000352 27.91427007776534 27.878274233056054 22.14917123917508 72-73 22.113894033845664 27.961660284787637 27.8035322660766 22.120913415290094 74-75 21.978018027915823 28.095956926778438 27.752156804046002 22.17386824125974 76-77 22.11277644885313 28.02307124708891 27.706536264773835 22.15761603928413 78-79 22.598094046866294 27.980228498531684 27.293400677300628 22.128276777301394 80-81 22.06906930070847 28.085235664431302 27.66145186836921 22.184243166491022 82-83 22.112773485160453 28.06834131291986 27.73834854566422 22.080536656255465 84-85 22.21743645030819 28.037117310813347 27.6677500410944 22.077696197784068 86-87 22.04835742167758 28.023215254971092 27.76016862717374 22.16825869617759 88-89 22.13871440799577 28.010018315248864 27.728051597391808 22.12321567936356 90-91 22.158164981759096 28.04564838917746 27.7356584023879 22.060528226675544 92-93 22.15708275769336 28.026553810558102 27.718436198272983 22.097927233475552 94-95 22.04760390578919 28.086567106735373 27.7520024851801 22.11382650229534 96-97 22.114777516128445 28.231509668780667 27.79871801033082 21.854994804760068 98-99 23.24868993516995 30.11669543351389 28.011884427335303 18.62273020398086 100 22.126608577220722 31.10930328025289 21.932641439932596 24.831446702593794 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1074.0 1 1045.0 2 1612.5 3 2392.5 4 3357.0 5 5411.0 6 7045.0 7 8090.5 8 8718.5 9 8615.5 10 7996.5 11 7373.0 12 8150.0 13 10728.5 14 16524.0 15 24231.5 16 30424.0 17 34232.5 18 35081.0 19 33242.5 20 30230.0 21 27342.0 22 26222.0 23 28250.5 24 33334.5 25 41661.5 26 53350.0 27 66465.5 28 79842.5 29 94034.0 30 108464.0 31 122866.5 32 138179.5 33 153740.0 34 168992.5 35 182692.0 36 197227.5 37 210377.0 38 218817.5 39 226012.5 40 234678.5 41 242494.0 42 246621.0 43 250107.0 44 252748.5 45 254717.0 46 254966.0 47 253428.0 48 251432.5 49 246029.5 50 238059.0 51 228523.5 52 216297.5 53 203003.5 54 189359.5 55 173735.0 56 157440.0 57 140993.5 58 124372.5 59 107193.0 60 88354.0 61 70384.0 62 54863.5 63 41639.5 64 30305.0 65 21912.0 66 16279.0 67 12199.0 68 9199.5 69 6595.0 70 4521.0 71 3140.0 72 2120.0 73 1337.5 74 859.0 75 570.0 76 361.0 77 224.5 78 133.5 79 81.0 80 52.0 81 31.0 82 24.0 83 19.5 84 16.5 85 11.0 86 9.0 87 9.5 88 8.0 89 6.5 90 3.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 2.890068536369746E-4 4 0.02286365330994733 5 0.01697112468301568 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008623884917226765 26-27 0.05305020187589691 28-29 0.08549296820336527 30-31 0.07568555050100666 32-33 0.03585312395710253 34-35 0.004478282869809539 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 4.612510666430916E-4 56-57 9.028877186890793E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.013415455170949728 74-75 0.02810368842021151 76-77 8.363791473950972E-4 78-79 5.113448598064234 80-81 0.0 82-83 0.01276316138922044 84-85 0.048758932348114285 86-87 0.03840078682190124 88-89 0.00968576716340066 90-91 1.9883257442253553E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 74.0 20-21 273.0 22-23 645.0 24-25 1475.0 26-27 2240.0 28-29 3699.0 30-31 8579.0 32-33 11210.0 34-35 15453.0 36-37 22838.0 38-39 28669.0 40-41 30798.0 42-43 36804.0 44-45 45486.0 46-47 45258.0 48-49 40633.0 50-51 36218.0 52-53 34876.0 54-55 38350.0 56-57 40247.0 58-59 40779.0 60-61 41010.0 62-63 40158.0 64-65 42267.0 66-67 45132.0 68-69 46019.0 70-71 46492.0 72-73 45037.0 74-75 45721.0 76-77 47915.0 78-79 48649.0 80-81 49369.0 82-83 47992.0 84-85 48635.0 86-87 51183.0 88-89 54357.0 90-91 57384.0 92-93 59439.0 94-95 69464.0 96-97 200698.0 98-99 386390.0 100-101 4270311.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.07968043989905 #Duplication Level Percentage of deduplicated Percentage of total 1 90.38656377369016 78.70833089473493 2 7.079439553949121 12.329506681029418 3 1.5652390609969937 4.089015517309976 4 0.4950436324790759 1.7243296528033902 5 0.2044903485813754 0.8903477103754868 6 0.09907445660383106 0.5176423212490953 7 0.050280690875108544 0.306489854559126 8 0.03198351907823995 0.22280916965412398 9 0.019446913354587106 0.15240879004138652 >10 0.0668680502486724 0.8838700107992346 >50 0.0011093658567020634 0.06511330241195654 >100 4.078132793932819E-4 0.07283304456416458 >500 5.282100675725793E-5 0.037303050467722317 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6055936313165257E-5 2 0.0 0.0 0.0 1.6055936313165257E-5 1.6055936313165257E-5 3 0.0 0.0 0.0 3.2111872626330514E-5 1.6055936313165257E-5 4 0.0 0.0 0.0 4.8167808939495774E-5 1.6055936313165257E-5 5 0.0 0.0 0.0 4.8167808939495774E-5 1.6055936313165257E-5 6 0.0 0.0 0.0 4.8167808939495774E-5 1.6055936313165257E-5 7 0.0 0.0 0.0 6.422374525266103E-5 1.6055936313165257E-5 8 1.6055936313165257E-5 0.0 0.0 6.422374525266103E-5 3.2111872626330514E-5 9 1.6055936313165257E-5 8.027968156582629E-5 0.0 9.633561787899155E-5 3.2111872626330514E-5 10-11 1.6055936313165257E-5 8.027968156582629E-5 0.0 1.1239155419215681E-4 3.2111872626330514E-5 12-13 1.6055936313165257E-5 9.633561787899155E-5 0.0 1.5253139497506995E-4 3.2111872626330514E-5 14-15 1.6055936313165257E-5 1.2844749050532205E-4 0.0 1.685873312882352E-4 4.0139840782913144E-5 16-17 1.6055936313165257E-5 1.2844749050532205E-4 0.0 2.2478310838431361E-4 4.8167808939495774E-5 18-19 1.6055936313165257E-5 1.3647545866190468E-4 0.0 2.2478310838431361E-4 5.6195777096078404E-5 20-21 1.6055936313165257E-5 1.4450342681848733E-4 0.0 2.2478310838431361E-4 6.422374525266103E-5 22-23 1.6055936313165257E-5 1.7661529944481782E-4 0.0 2.3281107654089624E-4 6.422374525266103E-5 24-25 1.6055936313165257E-5 2.0069920391456572E-4 0.0 2.568949810106441E-4 6.422374525266103E-5 26-27 1.6055936313165257E-5 2.0872717207114834E-4 0.0 3.291466944198878E-4 6.422374525266103E-5 28-29 1.6055936313165257E-5 2.1675514022773096E-4 0.0 4.3351028045546193E-4 6.422374525266103E-5 30-31 1.6055936313165257E-5 2.4083904469747886E-4 0.0 8.509646245977586E-4 6.422374525266103E-5 32-33 1.6055936313165257E-5 2.4083904469747886E-4 0.0 0.0019829081346759096 6.422374525266103E-5 34-35 1.6055936313165257E-5 2.6492294916722676E-4 0.0 0.003500194116270026 8.027968156582629E-5 36-37 1.6055936313165257E-5 2.8900685363697466E-4 0.0 0.0058684447224619015 8.027968156582629E-5 38-39 1.6055936313165257E-5 2.8900685363697466E-4 0.0 0.009609477883429406 1.0436358603557418E-4 40-41 1.6055936313165257E-5 3.371746625764704E-4 0.0 0.01355923821646806 1.1239155419215681E-4 42-43 1.6055936313165257E-5 3.371746625764704E-4 0.0 0.01790236898917926 1.3647545866190468E-4 44-45 1.6055936313165257E-5 4.254823122988793E-4 0.0 0.022727177851285422 1.6055936313165257E-4 46-47 1.6055936313165257E-5 5.137899620212882E-4 0.0 0.0281460563569787 1.6055936313165257E-4 48-49 1.6055936313165257E-5 5.137899620212882E-4 0.0 0.03409478076100643 1.926712357579831E-4 50-51 1.6055936313165257E-5 5.298458983344535E-4 0.0 0.04004350516503415 2.0872717207114837E-4 52-53 1.6055936313165257E-5 5.298458983344535E-4 0.0 0.04574336255620782 2.3281107654089624E-4 54-55 1.6055936313165257E-5 5.298458983344535E-4 0.0 0.05137096823397225 2.4083904469747886E-4 56-57 1.6055936313165257E-5 5.298458983344535E-4 0.0 0.05654900769496804 2.488670128540615E-4 58-59 1.6055936313165257E-5 5.459018346476187E-4 0.0 0.06171901918780724 2.568949810106441E-4 60-61 1.6055936313165257E-5 5.459018346476187E-4 0.0 0.0670576180119347 2.649229491672267E-4 62-63 1.6055936313165257E-5 5.539298028042014E-4 0.0 0.07206707014164226 2.8900685363697466E-4 64-65 1.6055936313165257E-5 6.101255799002798E-4 0.0 0.07680357135402602 2.8900685363697466E-4 66-67 1.6055936313165257E-5 6.181535480568625E-4 0.0 0.08122698180830304 2.970348217935573E-4 68-69 1.6055936313165257E-5 6.26181516213445E-4 0.0 0.08523293791843778 3.130907581067225E-4 70-71 1.6055936313165257E-5 6.342094843700276E-4 0.0 0.08903819482465794 3.2111872626330515E-4 72-73 1.6055936313165257E-5 6.422374525266103E-4 0.0 0.09216910240572516 3.371746625764704E-4 74-75 1.6055936313165257E-5 6.582933888397756E-4 0.0 0.09494677938790275 3.371746625764704E-4 76-77 1.6055936313165257E-5 6.582933888397756E-4 0.0 0.09722672234437221 3.371746625764704E-4 78-79 1.6055936313165257E-5 6.582933888397756E-4 0.0 0.09860753286730442 3.371746625764704E-4 80-81 1.6055936313165257E-5 6.582933888397756E-4 0.0 0.09932202203324028 3.612585670462183E-4 82-83 1.6055936313165257E-5 6.582933888397756E-4 0.0 0.09974750434553917 3.853424715159662E-4 84-85 1.6055936313165257E-5 6.582933888397756E-4 0.0 0.10001242729470639 3.853424715159662E-4 86-87 1.6055936313165257E-5 6.904052614661061E-4 0.0 0.10011679088074196 3.853424715159662E-4 88 1.6055936313165257E-5 7.546290067187671E-4 0.0 0.1001408747852117 3.853424715159662E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7610 0.0 50.378963 1 GTATCAA 14025 0.0 37.429424 1 TCAACGC 16325 0.0 31.259907 4 ATCAACG 16365 0.0 31.15721 3 CAACGCA 16670 0.0 30.58076 5 TATCAAC 17335 0.0 29.71163 2 AACGCAG 17290 0.0 29.479908 6 ACGCAGA 19550 0.0 26.116001 7 CGCAGAG 19975 0.0 25.560345 8 GTACATG 16265 0.0 21.53409 1 GCAGAGT 23840 0.0 21.416437 9 TACATGG 16000 0.0 21.030178 2 ACATGGG 16180 0.0 20.184568 3 GTGGTAT 3790 0.0 20.095104 1 GAGTACT 14775 0.0 20.072872 12-13 CAGAGTA 23180 0.0 19.066507 10-11 AGAGTAC 21290 0.0 19.041819 10-11 CATGGGG 11945 0.0 17.939047 4 TGGTATC 3655 0.0 17.658754 2 GTACTTT 16945 0.0 17.400988 14-15 >>END_MODULE