##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138879_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6472449 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.023663376876357 28.0 18.0 32.0 18.0 33.0 2 26.574143419283796 28.0 18.0 32.0 18.0 33.0 3 29.71868623453039 32.0 27.0 33.0 25.0 33.0 4 30.827349122411007 33.0 31.0 33.0 27.0 33.0 5 32.35249995789847 33.0 33.0 33.0 32.0 34.0 6 36.5572731434423 38.0 37.0 38.0 34.0 38.0 7 36.75905966968608 38.0 37.0 38.0 34.0 38.0 8 37.020184940816065 38.0 38.0 38.0 35.0 38.0 9 37.133003597247345 38.0 38.0 38.0 36.0 38.0 10-11 37.14830908671509 38.0 38.0 38.0 36.0 38.0 12-13 37.20069412675171 38.0 38.0 38.0 36.0 38.0 14-15 37.19247281824855 38.0 38.0 38.0 36.0 38.0 16-17 37.16792407325264 38.0 38.0 38.0 36.0 38.0 18-19 37.18849588463347 38.0 38.0 38.0 36.0 38.0 20-21 37.20688778020199 38.0 38.0 38.0 36.0 38.0 22-23 37.21528879298525 38.0 38.0 38.0 36.0 38.0 24-25 37.213825851714084 38.0 38.0 38.0 36.0 38.0 26-27 37.17674338641767 38.0 38.0 38.0 36.0 38.0 28-29 37.15068874350889 38.0 38.0 38.0 36.0 38.0 30-31 37.15594975336083 38.0 38.0 38.0 36.0 38.0 32-33 37.1494132359566 38.0 38.0 38.0 36.0 38.0 34-35 37.12585441921418 38.0 38.0 38.0 36.0 38.0 36-37 37.11012729882583 38.0 38.0 38.0 36.0 38.0 38-39 37.086500854877926 38.0 38.0 38.0 36.0 38.0 40-41 37.07926867762676 38.0 38.0 38.0 36.0 38.0 42-43 37.05206032443028 38.0 38.0 38.0 36.0 38.0 44-45 37.01229217978929 38.0 38.0 38.0 36.0 38.0 46-47 36.99332649830741 38.0 38.0 38.0 36.0 38.0 48-49 36.962933706407824 38.0 38.0 38.0 36.0 38.0 50-51 36.9283153964113 38.0 38.0 38.0 36.0 38.0 52-53 36.906271841540395 38.0 38.0 38.0 36.0 38.0 54-55 36.87466709897162 38.0 38.0 38.0 35.0 38.0 56-57 36.87678714707593 38.0 38.0 38.0 35.0 38.0 58-59 36.86261586972248 38.0 38.0 38.0 35.0 38.0 60-61 36.871885147069875 38.0 38.0 38.0 35.0 38.0 62-63 36.86033869088021 38.0 38.0 38.0 35.0 38.0 64-65 36.853561775221564 38.0 38.0 38.0 35.0 38.0 66-67 36.84220365719841 38.0 38.0 38.0 35.0 38.0 68-69 36.84346424980321 38.0 38.0 38.0 35.0 38.0 70-71 36.82424229087714 38.0 38.0 38.0 35.0 38.0 72-73 36.80710179465176 38.0 38.0 38.0 35.0 38.0 74-75 36.821924805541535 38.0 38.0 38.0 35.0 38.0 76-77 36.79887764957739 38.0 38.0 38.0 35.0 38.0 78-79 36.77519417141974 38.0 38.0 38.0 35.0 38.0 80-81 36.766711954317074 38.0 38.0 38.0 35.0 38.0 82-83 36.709649705828184 38.0 38.0 38.0 34.5 38.0 84-85 36.71087959156371 38.0 38.0 38.0 34.5 38.0 86-87 36.69904280815488 38.0 38.0 38.0 34.0 38.0 88-89 36.673595344360024 38.0 38.0 38.0 34.0 38.0 90-91 36.65122689719429 38.0 38.0 38.0 34.0 38.0 92-93 36.65114431191364 38.0 38.0 38.0 34.0 38.0 94-95 36.59579743001548 38.0 38.0 38.0 34.0 38.0 96-97 36.56188809501292 38.0 38.0 38.0 34.0 38.0 98-99 36.59090820946619 38.0 38.0 38.0 34.0 38.0 100 34.97327341428841 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 10.0 19 40.0 20 93.0 21 214.0 22 687.0 23 1915.0 24 4641.0 25 8896.0 26 15403.0 27 24661.0 28 36730.0 29 52199.0 30 70947.0 31 93002.0 32 121508.0 33 163730.0 34 241179.0 35 430896.0 36 1276742.0 37 3928951.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.90342094622916 16.91407688187269 13.425505554389073 22.756996617509078 2 14.538967260335331 19.384815862079304 41.9173976988805 24.15881917870487 3 19.10015822449895 25.019695018068123 30.052256881436996 25.827889875995936 4 12.474675350860238 17.478948076686272 39.681100615856536 30.365275956596953 5 13.522154450002116 37.375945060931656 35.29175101284946 13.810149476216772 6 29.938320053445032 37.6972593351136 18.840008503742943 13.524412107698423 7 26.62485250945971 32.649140997480245 22.94154809099307 17.784458402066978 8 23.914178389045627 37.1640008287435 21.1586217210827 17.763199061128176 9 25.376453333197375 17.33399521572128 21.472506001978537 35.8170454491028 10-11 24.164330997432348 26.81113439441547 28.87358401742524 20.15095059072694 12-13 24.9104087185546 24.28020676563075 29.05095891833215 21.758425597482496 14-15 22.10786056406161 25.63687253464647 26.603067865038412 25.65219903625351 16-17 21.8052085076298 28.856758855882838 27.295626431355423 22.042406205131936 18-19 21.810716469144833 27.991514494745346 28.958667731487726 21.2391013046221 20-21 22.52842891731639 27.159390275990052 28.892619103571164 21.419561703122394 22-23 22.23507121819323 27.116087103471585 28.75014823040896 21.898693447926224 24-25 22.030743324598358 27.248743080928694 28.88913285041827 21.83138074405468 26-27 22.01571546112931 27.3574485875687 28.816906973676964 21.809928977625027 28-29 21.941989880287892 27.32193198888173 28.935238356101706 21.80083977472867 30-31 22.202715169300095 27.242367792487315 28.770781831438953 21.784135206773644 32-33 22.027756365015243 27.30582258112139 28.733799610176213 21.932621443687157 34-35 22.069687002296455 27.41214588133155 28.796739562587188 21.721427553784803 36-37 22.1176479943705 27.285726414412537 28.699673127683994 21.896952463532966 38-39 21.900509875192377 27.408740397371446 28.83276537284638 21.8579843545898 40-41 22.176194201588594 27.2425254668268 28.74809598790386 21.833184343680745 42-43 22.125602478451402 27.268768052950403 28.624133509906564 21.981495958691628 44-45 22.08134178855388 27.470263814981273 28.497865402422345 21.950528994042507 46-47 22.207767287893617 27.369683336370475 28.241227376787442 22.181321998948462 48-49 22.155189514005478 27.45249721797861 28.254348687474668 22.13796458054124 50-51 22.052322471027733 27.550557876067554 28.23450795432152 22.16261169858319 52-53 22.20901684593198 27.544582131014263 28.15711286121197 22.089288161841786 54-55 22.22980157246339 27.440333744761418 28.136999669327484 22.192865013447708 56-57 22.24453698395525 27.603633944985837 28.032477594274045 22.119351476784864 58-59 22.13183496741901 27.63352701750228 28.22206215142447 22.012575863654245 60-61 22.23169066824406 27.69405923734722 28.086414332580183 21.987835761828535 62-63 22.13953281568374 27.80145136838541 28.02368841154083 22.035327404390017 64-65 22.130000124093943 27.76431320207871 28.011510057813986 22.094176616013357 66-67 22.21678875595826 27.741824282338435 27.9407320281367 22.100654933566606 68-69 22.154343374794056 27.693113449381247 28.024246539529805 22.128296636294888 70-71 22.169709915046987 27.458742997977666 28.11194767630605 22.2595994106693 72-73 22.269270085118226 27.436460113786172 28.039285830258958 22.254983970836648 74-75 22.165869331614594 27.56544233575272 27.984741408176806 22.283946924455876 76-77 22.280020183517806 27.51925977503734 27.928355612245966 22.27236442919888 78-79 22.21239168981982 27.541553014216426 27.88242307544587 22.363632220517882 80-81 22.252889889623297 27.57677283189749 27.85467421725788 22.31566306122133 82-83 22.312023028812515 27.52941930049954 27.97090663634766 22.187651034340288 84-85 22.398402357905624 27.51727197244574 27.850643296274647 22.23368237337399 86-87 22.244154740204262 27.5712576063419 27.91779880904361 22.26678884441023 88-89 22.326241192128474 27.540098556858382 27.851471659269027 22.282188591744116 90-91 22.334411439602697 27.61305520526832 27.834621611944016 22.217911743184967 92-93 22.368585329216227 27.576932794216386 27.839078900413778 22.215402976153612 94-95 22.262442710481746 27.650790145939524 27.83616964126807 22.250597502310658 96-97 22.37839494315715 27.765891181947076 27.871250486143655 21.98446338875211 98-99 23.39332489341041 29.662636292403494 28.127012726791094 18.817026087395007 100 22.243467161824153 30.59035704048393 22.071041302056614 25.095134495635303 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 880.0 1 841.5 2 1258.0 3 1892.5 4 2387.5 5 3282.0 6 4117.5 7 5217.0 8 7112.0 9 8242.5 10 7819.5 11 7494.0 12 8353.5 13 10143.5 14 13157.5 15 16520.0 16 19264.5 17 21553.5 18 22240.0 19 21080.5 20 19522.5 21 18756.5 22 19952.0 23 23689.5 24 29836.0 25 38782.0 26 50438.5 27 63533.5 28 77354.0 29 92244.5 30 107023.5 31 121594.0 32 136116.0 33 149453.0 34 163411.5 35 177144.5 36 191493.5 37 204995.0 38 215467.5 39 225693.5 40 236499.5 41 245650.5 42 253085.5 43 262159.0 44 268437.5 45 272104.0 46 274109.0 47 273913.0 48 273279.0 49 269892.0 50 263283.0 51 254341.5 52 243504.0 53 230394.0 54 216311.5 55 200439.0 56 183913.5 57 167007.5 58 148864.0 59 129525.0 60 108666.5 61 88608.0 62 70598.5 63 55382.5 64 42304.5 65 31880.0 66 24348.0 67 18248.5 68 13303.0 69 9886.5 70 7263.5 71 5074.0 72 3612.5 73 2484.5 74 1648.0 75 1073.0 76 637.5 77 364.5 78 238.0 79 162.5 80 114.5 81 70.5 82 48.0 83 32.5 84 20.0 85 12.0 86 7.0 87 6.0 88 3.5 89 2.0 90 2.0 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0032136213047024398 3 0.0 4 0.0 5 0.0017767617790422144 6 7.725051213227018E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.545072427973938E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 3.6493369925100195E-4 50-51 0.0017402175468014354 52-53 0.004170955195632195 54-55 0.0059237494964812926 56-57 0.006528958519238887 58-59 0.008365702035575611 60-61 0.007796436816284729 62-63 0.005719982978561863 64-65 0.0032745940106641467 66-67 0.0011212555280505103 68-69 5.351440033035053E-4 70-71 2.303036562565576E-4 72-73 4.920052721495853E-4 74-75 0.0 76-77 2.913001481170222E-4 78-79 1.9295534728424994E-4 80-81 8.348722812384162E-5 82-83 0.0 84-85 1.7010640722793464E-4 86-87 1.812251161223777E-4 88-89 3.8524340545154094E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 160.0 22-23 282.0 24-25 471.0 26-27 1394.0 28-29 3698.0 30-31 11264.0 32-33 14330.0 34-35 20027.0 36-37 31909.0 38-39 36348.0 40-41 35429.0 42-43 40989.0 44-45 48501.0 46-47 50247.0 48-49 46450.0 50-51 42884.0 52-53 41832.0 54-55 45506.0 56-57 47972.0 58-59 47182.0 60-61 46426.0 62-63 45203.0 64-65 48456.0 66-67 52530.0 68-69 53788.0 70-71 57586.0 72-73 48503.0 74-75 47988.0 76-77 50438.0 78-79 51752.0 80-81 51253.0 82-83 48749.0 84-85 48482.0 86-87 49916.0 88-89 52505.0 90-91 52972.0 92-93 52489.0 94-95 64174.0 96-97 201622.0 98-99 451298.0 100-101 4329397.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.27728604613894 #Duplication Level Percentage of deduplicated Percentage of total 1 90.15684566810599 77.78487962724783 2 7.013916122957825 12.102832952881162 3 1.655510406804584 4.284988347607168 4 0.569810796834454 1.966469164426582 5 0.24587369478101573 1.0606657547921376 6 0.1294363834372906 0.6700451927158105 7 0.06958788235543559 0.4202697541927487 8 0.043656516872435644 0.3013252635184977 9 0.02873551385711281 0.223129993385962 >10 0.08563133016358536 1.0613260918733083 >50 7.218910182252955E-4 0.0404308559576062 >100 1.9372821984999829E-4 0.030124926746994275 >500 5.337640797518727E-5 0.02845995960295821 >1k 2.6688184219671055E-5 0.025052115051222013 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 6.180040970581615E-5 0.0 5 0.0 0.0 0.0 6.180040970581615E-5 0.0 6 1.0815071698517826E-4 0.0 0.0 6.180040970581615E-5 0.0 7 1.0815071698517826E-4 0.0 0.0 6.180040970581615E-5 0.0 8 1.0815071698517826E-4 1.5450102426454037E-5 0.0 7.725051213227018E-5 0.0 9 1.0815071698517826E-4 6.180040970581615E-5 0.0 1.236008194116323E-4 0.0 10-11 1.0815071698517826E-4 6.180040970581615E-5 0.0 2.472016388232646E-4 0.0 12-13 1.0815071698517826E-4 6.180040970581615E-5 0.0 3.012769973158537E-4 0.0 14-15 1.0815071698517826E-4 1.3132587062485932E-4 0.0 3.5535235580844284E-4 0.0 16-17 1.8540122911744843E-4 1.3905092183808633E-4 0.0 3.862525606613509E-4 0.0 18-19 2.0085133154390246E-4 1.4677597305131333E-4 0.0 4.017026630878049E-4 0.0 20-21 2.0085133154390246E-4 1.5450102426454036E-4 0.0 4.2487781672748603E-4 0.0 22-23 2.472016388232646E-4 2.0085133154390246E-4 0.0 4.3260286794071304E-4 0.0 24-25 2.7810184367617265E-4 2.085763827571295E-4 0.0 4.5577802158039405E-4 0.0 26-27 2.7810184367617265E-4 2.2402648518358352E-4 0.0 4.8667822643330217E-4 0.0 28-29 2.935519461026267E-4 2.3175153639681055E-4 0.0 6.257291482713884E-4 0.0 30-31 2.935519461026267E-4 2.472016388232646E-4 0.0 0.0011510326307708257 0.0 32-33 3.090020485290807E-4 2.472016388232646E-4 0.0 0.0026419675149236405 0.0 34-35 3.244521509555348E-4 2.9355194610262666E-4 0.0 0.004380104037899719 0.0 36-37 3.5535235580844284E-4 3.553523558084428E-4 0.0 0.007029796604036587 0.0 38-39 3.862525606613509E-4 3.862525606613509E-4 0.0 0.011000472927635275 0.0 40-41 3.862525606613509E-4 4.3260286794071304E-4 0.0 0.015519627887373079 0.0 42-43 4.017026630878049E-4 4.4032791915394004E-4 0.0 0.01966025533766276 0.0 44-45 4.017026630878049E-4 4.712281240068481E-4 0.0 0.023893583402511166 0.0 46-47 4.017026630878049E-4 4.944032776465292E-4 0.0 0.02943244512239494 0.0 48-49 4.017026630878049E-4 5.021283288597562E-4 0.0 0.03459277933283059 0.0 50-51 4.3260286794071304E-4 5.871038922052534E-4 0.0 0.03962178767264138 0.0 52-53 4.5577802158039405E-4 5.871038922052534E-4 0.0 0.04478212188307702 0.0 54-55 4.635030727936211E-4 5.871038922052534E-4 0.0 0.049950181144725894 0.0 56-57 4.635030727936211E-4 5.871038922052534E-4 0.0 0.054809238357845694 0.0 58-59 4.944032776465292E-4 5.871038922052534E-4 0.0 0.05942881898335545 0.0 60-61 5.175784312862102E-4 6.025539946317074E-4 0.0 0.06411020001857103 0.0 62-63 5.716537897787993E-4 6.180040970581614E-4 0.0 0.0690465077438231 0.0 64-65 5.716537897787993E-4 6.489043019110696E-4 0.0 0.07385921464966352 0.0 66-67 5.871038922052534E-4 6.489043019110696E-4 0.0 0.0784865203263865 0.0 68-69 6.025539946317074E-4 6.566293531242966E-4 0.0 0.08345372825649147 0.0 70-71 6.411792506978424E-4 6.720794555507506E-4 0.0 0.08818918465019965 0.0 72-73 6.952546091904316E-4 6.798045067639776E-4 0.0 0.0919512845910412 0.0 74-75 6.952546091904316E-4 6.798045067639776E-4 0.0 0.09450055149140611 0.0 76-77 7.338798652565667E-4 7.338798652565667E-4 0.0 0.09713479395511652 0.0 78-79 7.570550188962478E-4 7.493299676830207E-4 0.0 0.09883430522202646 0.0 80-81 7.570550188962478E-4 7.570550188962478E-4 0.0 0.09952183478000368 0.0 82-83 7.570550188962478E-4 7.570550188962478E-4 0.0 0.09996216269915761 0.0 84-85 7.570550188962478E-4 7.570550188962478E-4 0.0 0.10010893867220894 0.0 86-87 7.570550188962478E-4 7.570550188962478E-4 0.0 0.1002170893891941 0.0 88 7.570550188962478E-4 7.725051213227018E-4 0.0 0.10022481444040733 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7280 0.0 47.38341 1 GTATCAA 13285 0.0 38.07405 1 TCAACGC 14825 0.0 33.246277 4 ATCAACG 14845 0.0 33.027657 3 CAACGCA 15165 0.0 32.472534 5 TATCAAC 15755 0.0 31.477064 2 AACGCAG 15745 0.0 31.275618 6 ACGCAGA 18150 0.0 27.20247 7 CGCAGAG 18765 0.0 26.265104 8 GTGGTAT 3775 0.0 24.952295 1 GCAGAGT 22620 0.0 21.636786 9 TGGTATC 4055 0.0 21.001856 2 GTACATG 17375 0.0 20.026592 1 GAGTACT 12680 0.0 19.858696 12-13 TACATGG 17125 0.0 19.665932 2 ACATGGG 17495 0.0 18.609514 3 CAGAGTA 22110 0.0 18.576235 10-11 GCGTACA 770 0.0 17.874857 1 AGAGTAC 20205 0.0 17.528624 10-11 GTACTTT 14485 0.0 17.443789 14-15 >>END_MODULE