##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138878_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6138945 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.091086171972545 28.0 18.0 32.0 18.0 33.0 2 26.60904846028104 28.0 18.0 32.0 18.0 33.0 3 29.74279033286664 32.0 27.0 33.0 25.0 33.0 4 30.830618616065138 33.0 31.0 33.0 27.0 33.0 5 32.368597861684705 33.0 33.0 33.0 32.0 34.0 6 36.565421583024445 38.0 37.0 38.0 34.0 38.0 7 36.75482953504226 38.0 37.0 38.0 34.0 38.0 8 37.04516736996341 38.0 38.0 38.0 36.0 38.0 9 37.15332846278962 38.0 38.0 38.0 36.0 38.0 10-11 37.16979546159804 38.0 38.0 38.0 36.0 38.0 12-13 37.225475631399206 38.0 38.0 38.0 36.0 38.0 14-15 37.21724710027537 38.0 38.0 38.0 36.0 38.0 16-17 37.197838390798424 38.0 38.0 38.0 36.0 38.0 18-19 37.21814986125466 38.0 38.0 38.0 36.0 38.0 20-21 37.23465754921241 38.0 38.0 38.0 36.0 38.0 22-23 37.24872753113412 38.0 38.0 38.0 36.0 38.0 24-25 37.246002970290746 38.0 38.0 38.0 36.0 38.0 26-27 37.20425080499142 38.0 38.0 38.0 36.0 38.0 28-29 37.179546685244404 38.0 38.0 38.0 36.0 38.0 30-31 37.18677832819705 38.0 38.0 38.0 36.0 38.0 32-33 37.17663492922192 38.0 38.0 38.0 36.0 38.0 34-35 37.15533850018906 38.0 38.0 38.0 36.0 38.0 36-37 37.14013140675341 38.0 38.0 38.0 36.0 38.0 38-39 37.124763068853355 38.0 38.0 38.0 36.0 38.0 40-41 37.10746693708151 38.0 38.0 38.0 36.0 38.0 42-43 37.0796051755768 38.0 38.0 38.0 36.0 38.0 44-45 37.039428972424574 38.0 38.0 38.0 36.0 38.0 46-47 37.019896707491725 38.0 38.0 38.0 36.0 38.0 48-49 36.98884736791101 38.0 38.0 38.0 36.0 38.0 50-51 36.95734564214081 38.0 38.0 38.0 36.0 38.0 52-53 36.93933429572337 38.0 38.0 38.0 36.0 38.0 54-55 36.91321442091545 38.0 38.0 38.0 36.0 38.0 56-57 36.91614132661506 38.0 38.0 38.0 36.0 38.0 58-59 36.90343187295055 38.0 38.0 38.0 36.0 38.0 60-61 36.91915608653785 38.0 38.0 38.0 36.0 38.0 62-63 36.91391998434407 38.0 38.0 38.0 36.0 38.0 64-65 36.90854806967194 38.0 38.0 38.0 35.5 38.0 66-67 36.90096201781053 38.0 38.0 38.0 35.0 38.0 68-69 36.91019610663214 38.0 38.0 38.0 35.0 38.0 70-71 36.89332940901774 38.0 38.0 38.0 35.0 38.0 72-73 36.88061624548549 38.0 38.0 38.0 35.0 38.0 74-75 36.89717242927789 38.0 38.0 38.0 35.0 38.0 76-77 36.88219608348736 38.0 38.0 38.0 35.0 38.0 78-79 36.85740153365407 38.0 38.0 38.0 35.0 38.0 80-81 36.851044066980535 38.0 38.0 38.0 35.0 38.0 82-83 36.800808334235924 38.0 38.0 38.0 35.0 38.0 84-85 36.80639065459907 38.0 38.0 38.0 35.0 38.0 86-87 36.79768448181383 38.0 38.0 38.0 35.0 38.0 88-89 36.778825752477566 38.0 38.0 38.0 35.0 38.0 90-91 36.75939970021769 38.0 38.0 38.0 35.0 38.0 92-93 36.765218021118315 38.0 38.0 38.0 35.0 38.0 94-95 36.71065300540707 38.0 38.0 38.0 34.5 38.0 96-97 36.67844740534267 38.0 38.0 38.0 34.0 38.0 98-99 36.70638814843305 38.0 38.0 38.0 34.0 38.0 100 35.13956395279582 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 12.0 19 36.0 20 75.0 21 190.0 22 593.0 23 1550.0 24 3794.0 25 7537.0 26 13568.0 27 21553.0 28 32792.0 29 47176.0 30 63841.0 31 83905.0 32 109728.0 33 148500.0 34 219664.0 35 407808.0 36 1243157.0 37 3733466.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.58611536672832 17.306605613831042 13.258809127626977 22.848469891813657 2 14.504368666020712 19.8241293456156 41.63750204440147 24.033999943962222 3 18.760389610918487 25.497801332313614 30.434431323297407 25.307377733470492 4 12.524432129624879 17.546826042585494 39.80296288694556 30.12577894084407 5 13.321844682651953 37.58994411296518 35.34750697691996 13.740704227462903 6 29.738370184694723 37.82101831569973 18.905492005868766 13.535119493736786 7 26.237814477894815 33.10435262084935 23.28281162316978 17.375021278086056 8 23.994660320299335 36.85573009694663 21.409199789214597 17.740409793539445 9 25.692509054894614 17.117452591609798 21.527819519477696 35.66221883401789 10-11 24.102064768457772 26.76853270390922 29.00835567023324 20.121046857399765 12-13 24.932744958620738 24.40799681378478 29.15632083362858 21.5029373939659 14-15 22.211552636487212 25.668156336308602 26.88163031270031 25.238660714503876 16-17 21.629783293383472 28.819088621904903 27.551753599356243 21.999374485355382 18-19 21.66592956933154 27.973853813643874 29.293779305727615 21.066437311296973 20-21 22.48430644045179 27.169234693811063 29.17654912406676 21.16990974167039 22-23 22.23500664774742 26.965182550165995 29.05603615709943 21.743774644987155 24-25 22.00921333600736 27.053837377581413 29.160545703454467 21.776403582956764 26-27 21.896161093771767 27.247655522506253 29.095953510463485 21.760229873258496 28-29 21.841188158836292 27.34546942314996 29.1277076775873 21.685634740426448 30-31 22.18202104298098 27.13715047256422 28.98567942463447 21.69514905982033 32-33 21.91719731833219 27.32423711759564 28.945479554536433 21.81308600953574 34-35 22.000229773754914 27.32498215150297 28.961356978146874 21.713431096595244 36-37 22.049475208599482 27.226073152141065 28.970678380638965 21.753773258620484 38-39 21.853421916012678 27.424730065411122 28.97386177941359 21.747986239162607 40-41 22.116656074470512 27.257038696200848 28.83797518457888 21.788330044749767 42-43 22.065600196239902 27.287084422244657 28.71557714883368 21.93173823268176 44-45 22.08297378682905 27.43282181274665 28.578529460604607 21.90567493981969 46-47 22.114713074816937 27.39931540103874 28.408273078690083 22.07769844545424 48-49 22.034713151517398 27.520900810997585 28.383450434278473 22.06093560320654 50-51 22.027352680866493 27.63499522126873 28.285242136966033 22.052409960898743 52-53 22.226831325813748 27.542917471960422 28.122755452358707 22.107495749867127 54-55 22.221284208735902 27.412316146759334 28.183790681696845 22.182608962807915 56-57 22.165572186294042 27.572875613911457 28.145444513752093 22.116107686042405 58-59 22.101550620197223 27.598749143609822 28.198058800494323 22.101641435698628 60-61 22.20311985729809 27.556083048609054 28.196392853569595 22.04440424052326 62-63 22.17352141666325 27.561436109418125 28.187992721851728 22.077049752066895 64-65 22.140645479753264 27.547188156170126 28.173446740721765 22.13871962335484 66-67 22.2362008432141 27.529538378636158 28.04066654498748 22.193594233162266 68-69 22.181735522232106 27.5153019000287 28.122430481833753 22.180532095905438 70-71 22.193449795027842 27.298212108157156 28.154335067694554 22.354003029120445 72-73 22.29698108602807 27.368502745576574 28.069906040268457 22.264610128126908 74-75 22.117085380239722 27.515324792474814 28.013744319976574 22.353845507308883 76-77 22.258982967273973 27.435213467085575 27.987279561027968 22.318524004612485 78-79 22.25112198999515 27.507230265938613 27.896560037687163 22.345087706379076 80-81 22.185134505707495 27.58107918893665 27.879098557236006 22.35468774811985 82-83 22.280310528170226 27.516248489019823 27.95765239646179 22.245788586348162 84-85 22.419930980455042 27.492479174705302 27.83324438631569 22.254345458523964 86-87 22.2083098458581 27.50159299466735 27.90567612987516 22.384421029599395 88-89 22.26970766333726 27.516356703309384 27.879485135224673 22.334450498128678 90-91 22.318992129078737 27.54809457397574 27.857192244879453 22.275721052066068 92-93 22.342487745632393 27.517477989685535 27.85016618524182 22.289868079440247 94-95 22.246744559801535 27.56680934287004 27.820494565211963 22.365951532116462 96-97 22.35062115965239 27.696126355308 27.87442997344253 22.078822511597078 98-99 23.382258264616 29.612111966983377 28.083984780759096 18.921644987641525 100 22.2421156322151 30.48378793544384 22.069600579227966 25.20449585311309 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1115.0 1 1039.5 2 1495.0 3 2220.5 4 2809.5 5 3955.5 6 5069.0 7 6186.0 8 7939.5 9 9047.5 10 8740.5 11 8441.0 12 9198.0 13 10999.0 14 14098.5 15 17572.0 16 20651.5 17 23320.5 18 23967.5 19 22431.5 20 20791.5 21 20090.0 22 21096.5 23 24423.0 24 30528.0 25 39833.5 26 52204.5 27 65686.5 28 78722.5 29 93556.5 30 107708.5 31 120624.5 32 134634.0 33 148378.0 34 162981.5 35 177302.5 36 192086.0 37 205624.0 38 213946.0 39 221133.5 40 231024.5 41 239163.0 42 244984.5 43 251313.0 44 255216.0 45 258261.0 46 259619.0 47 259012.0 48 258517.5 49 254755.5 50 248989.0 51 241742.5 52 231664.5 53 220192.0 54 208343.5 55 194628.0 56 179367.0 57 162990.0 58 145536.0 59 127653.0 60 108573.0 61 89131.0 62 70712.5 63 55310.5 64 42625.5 65 31971.5 66 23636.0 67 18059.0 68 13946.0 69 10234.0 70 7421.0 71 5460.5 72 3905.0 73 2652.0 74 1814.5 75 1211.0 76 766.5 77 463.5 78 306.5 79 202.5 80 126.5 81 85.5 82 58.0 83 40.5 84 27.0 85 14.0 86 8.0 87 4.5 88 4.5 89 3.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003730282646285315 3 0.0 4 0.0 5 0.0021664960347421262 6 6.515777548096618E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.145251334762336E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 2.453911453059128E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.7168192489774197E-5 48-49 3.6407899543323583E-4 50-51 0.0016622919226085876 52-53 0.003768535657363679 54-55 0.005698997644265895 56-57 0.006374858206609425 58-59 0.008091006478526097 60-61 0.00785858868550295 62-63 0.005573196295657508 64-65 0.0031878451298093338 66-67 0.0010391748120652353 68-69 5.921586542029368E-4 70-71 2.607474296097828E-4 72-73 5.076240247517474E-4 74-75 0.0 76-77 2.9920029744498906E-4 78-79 2.9253867991819814E-4 80-81 6.123262498752385E-5 82-83 1.0323546129836762E-5 84-85 6.263870558367685E-5 86-87 1.0560112596144544E-4 88-89 1.068716207861455E-5 90-91 1.0820473200934023E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 75.0 20-21 227.0 22-23 468.0 24-25 599.0 26-27 1804.0 28-29 4600.0 30-31 14282.0 32-33 18389.0 34-35 25083.0 36-37 38108.0 38-39 44494.0 40-41 43644.0 42-43 49645.0 44-45 57900.0 46-47 57905.0 48-49 54054.0 50-51 50110.0 52-53 49466.0 54-55 53424.0 56-57 55008.0 58-59 53665.0 60-61 52332.0 62-63 51803.0 64-65 54991.0 66-67 57236.0 68-69 57970.0 70-71 56448.0 72-73 53419.0 74-75 54496.0 76-77 56393.0 78-79 57272.0 80-81 56635.0 82-83 54145.0 84-85 54285.0 86-87 55860.0 88-89 57352.0 90-91 57209.0 92-93 57354.0 94-95 66529.0 96-97 188777.0 98-99 403797.0 100-101 3861692.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.88140516710327 #Duplication Level Percentage of deduplicated Percentage of total 1 90.82521599169658 78.91022389964257 2 6.560684072239383 11.400029021071816 3 1.499168288579261 3.907495424811827 4 0.5316667513452352 1.8476781775001168 5 0.22979567741232276 0.9982485677454485 6 0.1175601349638758 0.6128273830377502 7 0.06741161986668287 0.4099771381025615 8 0.045398173289893984 0.3155405669956516 9 0.032170094458985096 0.2515484709859561 >10 0.08896811767936588 1.152270578725543 >50 0.0013826960856292002 0.07821806353319263 >100 4.940623966628735E-4 0.06949689838606894 >500 8.43199861434349E-5 0.04644580946145347 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.8868331610724645E-5 0.0 0.0 0.0 3 0.0 4.8868331610724645E-5 0.0 0.0 0.0 4 0.0 6.51577754809662E-5 0.0 0.0 0.0 5 0.0 6.51577754809662E-5 0.0 0.0 0.0 6 0.0 6.51577754809662E-5 0.0 0.0 0.0 7 0.0 6.51577754809662E-5 0.0 0.0 0.0 8 0.0 9.773666322144929E-5 0.0 0.0 0.0 9 0.0 1.303155509619324E-4 0.0 0.0 0.0 10-11 0.0 1.303155509619324E-4 0.0 0.0 0.0 12-13 0.0 1.6289443870241548E-4 0.0 0.0 0.0 14-15 0.0 1.9547332644289858E-4 0.0 0.0 2.4434165805362323E-5 16-17 0.0 1.9547332644289858E-4 0.0 1.628944387024155E-5 3.25788877404831E-5 18-19 0.0 1.9547332644289858E-4 0.0 4.0723609675603876E-5 3.25788877404831E-5 20-21 0.0 1.9547332644289858E-4 0.0 4.8868331610724645E-5 3.25788877404831E-5 22-23 0.0 1.9547332644289858E-4 0.0 6.51577754809662E-5 3.25788877404831E-5 24-25 0.0 2.606311019238648E-4 0.0 9.773666322144929E-5 3.25788877404831E-5 26-27 0.0 3.0949943353458944E-4 0.0 1.3031555096193237E-4 3.25788877404831E-5 28-29 0.0 3.0949943353458944E-4 0.0 3.5836776514531403E-4 3.25788877404831E-5 30-31 0.0 3.420783212750725E-4 0.0 0.0010262349638252176 3.25788877404831E-5 32-33 0.0 3.420783212750725E-4 0.0 0.002875086843097633 3.25788877404831E-5 34-35 0.0 4.4795970643164257E-4 0.0 0.005131174819126088 3.25788877404831E-5 36-37 0.0 5.456963696530918E-4 0.0 0.008462366090590484 3.25788877404831E-5 38-39 0.0 5.701305354584542E-4 0.0 0.013617975075521933 3.25788877404831E-5 40-41 0.0 6.352883109394204E-4 0.0 0.018789873504323623 3.25788877404831E-5 42-43 0.0 6.515777548096619E-4 0.0 0.024140955815697973 3.25788877404831E-5 44-45 0.0 6.84156642550145E-4 0.0 0.030127326438011744 3.25788877404831E-5 46-47 0.0 7.004460864203865E-4 0.0 0.036439485937730345 3.25788877404831E-5 48-49 0.0 7.004460864203865E-4 0.0 0.04258060627681141 3.25788877404831E-5 50-51 0.0 7.737485838364735E-4 0.0 0.0486565688404115 3.25788877404831E-5 52-53 0.0 7.981827496418358E-4 0.0 0.05533524082721054 3.25788877404831E-5 54-55 0.0 8.144721935120774E-4 0.0 0.06153337421983744 3.25788877404831E-5 56-57 0.0 8.470510812525605E-4 0.0 0.06745458706667025 3.25788877404831E-5 58-59 0.0 8.470510812525605E-4 0.0 0.07408439072185857 3.25788877404831E-5 60-61 0.0 8.470510812525605E-4 0.0 0.07973682774483237 3.25788877404831E-5 62-63 0.0 8.470510812525605E-4 0.0 0.0852752386607145 3.25788877404831E-5 64-65 0.0 8.63340525122802E-4 0.0 0.0912697540049634 3.25788877404831E-5 66-67 0.0 8.796299689930436E-4 0.0 0.09710951963244499 3.25788877404831E-5 68-69 0.0 9.122088567335266E-4 0.0 0.10239544416833837 3.25788877404831E-5 70-71 0.0 9.284983006037683E-4 0.0 0.10714381705651378 3.25788877404831E-5 72-73 0.0 9.447877444740098E-4 0.0 0.1117374402279219 3.25788877404831E-5 74-75 0.0 0.0010099455199549762 0.0 0.11529668371356969 3.25788877404831E-5 76-77 0.0 0.0010995374612413045 0.0 0.11881520358954184 3.25788877404831E-5 78-79 0.0 0.0011239716270466668 0.0 0.12107129156557031 3.25788877404831E-5 80-81 0.0 0.0011239716270466668 0.0 0.12183689542747166 3.25788877404831E-5 82-83 0.0 0.0011239716270466668 0.0 0.12233372346551402 3.25788877404831E-5 84-85 0.0 0.0011239716270466668 0.0 0.12259435456743789 3.25788877404831E-5 86-87 0.0 0.0012217082902681161 0.0 0.12278168317194567 3.25788877404831E-5 88 0.0 0.0012542871780085992 0.0 0.12280611733775103 3.25788877404831E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8555 0.0 44.423374 1 GTATCAA 15215 0.0 36.35949 1 TCAACGC 16885 0.0 32.237263 4 ATCAACG 16895 0.0 32.118435 3 CAACGCA 17075 0.0 31.829199 5 AACGCAG 17605 0.0 30.99013 6 TATCAAC 17925 0.0 30.486378 2 ACGCAGA 20040 0.0 27.182566 7 CGCAGAG 20450 0.0 26.596382 8 GCAGAGT 24420 0.0 22.1518 9 GTACATG 18145 0.0 20.433874 1 GAGTACT 14255 0.0 20.348217 12-13 TACATGG 17765 0.0 20.206886 2 ACATGGG 17690 0.0 19.7911 3 CAGAGTA 23410 0.0 19.418232 10-11 CATGGGG 13520 0.0 19.257883 4 AGGACCG 1345 0.0 18.481041 5 GTACTTT 15815 0.0 18.274683 14-15 AGAGTAC 21565 0.0 18.139366 10-11 GTGGTAT 4715 0.0 16.799686 1 >>END_MODULE