##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138877_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4686892 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.095720362235785 28.0 18.0 32.0 18.0 33.0 2 26.632109722178363 28.0 18.0 32.0 18.0 33.0 3 29.76173698903239 32.0 27.0 33.0 25.0 33.0 4 30.831476168002165 33.0 31.0 33.0 27.0 33.0 5 32.349632336311565 33.0 33.0 33.0 32.0 34.0 6 36.55080552314839 38.0 37.0 38.0 34.0 38.0 7 36.76645888149332 38.0 37.0 38.0 34.0 38.0 8 37.02756581547004 38.0 38.0 38.0 36.0 38.0 9 37.14334381931566 38.0 38.0 38.0 36.0 38.0 10-11 37.16050967250792 38.0 38.0 38.0 36.0 38.0 12-13 37.21284360723482 38.0 38.0 38.0 36.0 38.0 14-15 37.200913206448966 38.0 38.0 38.0 36.0 38.0 16-17 37.1755947224728 38.0 38.0 38.0 36.0 38.0 18-19 37.19727241421394 38.0 38.0 38.0 36.0 38.0 20-21 37.215076063126375 38.0 38.0 38.0 36.0 38.0 22-23 37.22429638787021 38.0 38.0 38.0 36.0 38.0 24-25 37.22161944779499 38.0 38.0 38.0 36.0 38.0 26-27 37.182525632239816 38.0 38.0 38.0 36.0 38.0 28-29 37.15957539742794 38.0 38.0 38.0 36.0 38.0 30-31 37.16414251914638 38.0 38.0 38.0 36.0 38.0 32-33 37.15508499961402 38.0 38.0 38.0 36.0 38.0 34-35 37.13266004715214 38.0 38.0 38.0 36.0 38.0 36-37 37.11446748266815 38.0 38.0 38.0 36.0 38.0 38-39 37.10115981249537 38.0 38.0 38.0 36.0 38.0 40-41 37.08310497375765 38.0 38.0 38.0 36.0 38.0 42-43 37.05524170561442 38.0 38.0 38.0 36.0 38.0 44-45 37.01344193896661 38.0 38.0 38.0 36.0 38.0 46-47 36.995040330661524 38.0 38.0 38.0 36.0 38.0 48-49 36.9621217321823 38.0 38.0 38.0 36.0 38.0 50-51 36.92792451429387 38.0 38.0 38.0 36.0 38.0 52-53 36.906693128182056 38.0 38.0 38.0 36.0 38.0 54-55 36.87984125777941 38.0 38.0 38.0 35.5 38.0 56-57 36.88046338774224 38.0 38.0 38.0 35.0 38.0 58-59 36.867477179666096 38.0 38.0 38.0 35.0 38.0 60-61 36.87518457481765 38.0 38.0 38.0 35.0 38.0 62-63 36.86784409345604 38.0 38.0 38.0 35.0 38.0 64-65 36.86045910589023 38.0 38.0 38.0 35.0 38.0 66-67 36.850742419094146 38.0 38.0 38.0 35.0 38.0 68-69 36.85725438710192 38.0 38.0 38.0 35.0 38.0 70-71 36.83607708509426 38.0 38.0 38.0 35.0 38.0 72-73 36.81999821420631 38.0 38.0 38.0 35.0 38.0 74-75 36.83508647904652 38.0 38.0 38.0 35.0 38.0 76-77 36.81720364774042 38.0 38.0 38.0 35.0 38.0 78-79 36.79066593564528 38.0 38.0 38.0 35.0 38.0 80-81 36.78375667047757 38.0 38.0 38.0 35.0 38.0 82-83 36.726721364472596 38.0 38.0 38.0 35.0 38.0 84-85 36.72851351467402 38.0 38.0 38.0 35.0 38.0 86-87 36.71761014675313 38.0 38.0 38.0 35.0 38.0 88-89 36.696163215595305 38.0 38.0 38.0 34.5 38.0 90-91 36.67554142834726 38.0 38.0 38.0 34.0 38.0 92-93 36.67748514743086 38.0 38.0 38.0 34.0 38.0 94-95 36.62271220685088 38.0 38.0 38.0 34.0 38.0 96-97 36.58977309041375 38.0 38.0 38.0 34.0 38.0 98-99 36.618807196860644 38.0 38.0 38.0 34.0 38.0 100 35.02343758010004 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 10.0 19 21.0 20 57.0 21 162.0 22 495.0 23 1384.0 24 3242.0 25 6535.0 26 11361.0 27 18207.0 28 26702.0 29 38128.0 30 51002.0 31 67206.0 32 87548.0 33 116660.0 34 171739.0 35 308133.0 36 928167.0 37 2850131.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.92275819455622 16.775914614631617 13.40389324097931 22.897433949832852 2 14.627079677173294 19.55000560092602 41.56853666472857 24.25437805717212 3 18.98140601490284 25.080181066685558 30.17302297556675 25.765389942844852 4 12.62186113953554 17.298841108350693 39.53933651554164 30.53996123657213 5 13.568237084628548 37.38278513757471 35.169675507739925 13.879302270056812 6 30.090194156507653 37.59845816702721 18.735732806985613 13.575614869479521 7 26.566709879382756 32.84470817761536 23.01996717654258 17.56861476645931 8 24.14147797730351 36.82798750216561 21.23921353425682 17.79132098627406 9 25.72214166658843 17.14861362284431 21.30330718096342 35.82593752960384 10-11 24.26094947355305 26.635390787754442 28.90304491761278 20.200614821079725 12-13 25.019127814338372 24.175818431489354 29.013053853171783 21.79199990100049 14-15 22.317678751718624 25.515896248516075 26.623133197863318 25.543291801901987 16-17 21.905956015201543 28.65911994558441 27.27214537906997 22.162778660144077 18-19 21.907897600371417 27.82511310267017 29.00529818054267 21.26169111641574 20-21 22.67326557334936 27.103641539059286 28.798003856332105 21.425089031259247 22-23 22.43805261678899 26.873656164631715 28.71773381535198 21.970557403227318 24-25 22.193549364532323 26.967190744434255 28.873199013910707 21.966060877122715 26-27 22.097891890230787 27.168162215871263 28.774757229341446 21.95918866455651 28-29 22.04617241550093 27.26367287234497 28.77266714941276 21.917487562741336 30-31 22.37244921945453 27.046575865874225 28.67009805220504 21.910876862466207 32-33 22.173037802767862 27.19854015864777 28.625988898275313 22.00243314030906 34-35 22.236273276637757 27.24366529343144 28.599732841441426 21.920328588489372 36-37 22.291307188619175 27.09539868458668 28.643437281057853 21.969856845736295 38-39 22.06664835322208 27.30185243529756 28.71179238282216 21.919706828658196 40-41 22.364945750280274 27.131717930724342 28.55406811197172 21.949268207023668 42-43 22.242385538611018 27.222928677303916 28.402433215259386 22.132252568825685 44-45 22.234946701238837 27.351871551093677 28.36112403873856 22.052057708928928 46-47 22.321493160736967 27.243700799418775 28.136960352634706 22.297845687209556 48-49 22.23347875200593 27.371494886958548 28.164886590807107 22.230139770228423 50-51 22.23578249350146 27.498065111445484 28.057533416355714 22.20861897869734 52-53 22.430171953213318 27.464085648705478 27.89655978922604 22.209182608855166 54-55 22.425312936464167 27.29520550739973 27.933440886850686 22.34604066928542 56-57 22.366072678079956 27.449246629659 27.923088585156503 22.261592107104537 58-59 22.302406068460343 27.462202448090256 28.004920233312163 22.23047125013724 60-61 22.409156265247095 27.39236212412074 28.01398342161137 22.1844981890208 62-63 22.308115091173423 27.479344981220965 27.987981706855425 22.224558220750186 64-65 22.32364167285086 27.40469289732142 27.961064954591492 22.310600475236228 66-67 22.43402212232628 27.43390802178088 27.818335335279265 22.313734520613576 68-69 22.35191046173714 27.416075753283586 27.90698935825833 22.325024426720947 70-71 22.369945889638878 27.18123091450583 27.959153757641825 22.48966943821347 72-73 22.39753071043655 27.258576560494006 27.88362334402042 22.460269385049024 74-75 22.243886761461905 27.429292605298105 27.882389033105078 22.444431600134905 76-77 22.403392126827747 27.337621099494935 27.75472037320273 22.504266400474588 78-79 22.391158503649006 27.46015909516231 27.668129000998736 22.480553400189944 80-81 22.4114019410471 27.397267097550216 27.645082377443188 22.546248583959503 82-83 22.478298696789064 27.39037597662654 27.715612339029594 22.415712987554798 84-85 22.58823759348452 27.336575865850023 27.65999914057226 22.4151874000932 86-87 22.332050809743247 27.388496684735824 27.764189194034106 22.515263311486823 88-89 22.43332718212178 27.414714181378848 27.666608346432586 22.485350290066787 90-91 22.513518898783992 27.37866200262352 27.714337504773816 22.393481593818667 92-93 22.480217878068633 27.416729603153662 27.657033826116113 22.446018692661593 94-95 22.402227417274585 27.435766490174068 27.6592563958611 22.50274969669025 96-97 22.49456517431433 27.589430534028818 27.70221262435969 22.213791667297155 98-99 23.546778281554506 29.49299669863543 27.860563398750767 19.099661621059298 100 22.425198350422995 30.36295258276411 21.876871756930484 25.33497730988241 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 739.0 1 711.5 2 1071.5 3 1612.0 4 2003.0 5 2740.5 6 3448.5 7 4175.5 8 5366.0 9 6137.5 10 5979.0 11 5836.0 12 6398.0 13 7707.0 14 9928.5 15 12305.5 16 14308.5 17 15976.0 18 16397.5 19 15401.0 20 14272.5 21 13725.5 22 14367.5 23 16865.5 24 21283.0 25 27780.0 26 36725.5 27 46657.5 28 56024.0 29 66091.0 30 75676.5 31 84878.5 32 95007.5 33 105283.0 34 116317.5 35 126958.0 36 138085.0 37 148646.0 38 156153.0 39 162832.5 40 171825.0 41 179527.5 42 184571.0 43 189436.5 44 193699.5 45 197863.0 46 200179.0 47 201151.5 48 200658.0 49 197728.0 50 194274.0 51 189006.0 52 181650.0 53 173093.5 54 163449.0 55 152244.0 56 140056.0 57 127708.5 58 114314.5 59 100225.5 60 85096.0 61 69761.0 62 55277.5 63 42915.0 64 32778.5 65 24385.5 66 17975.5 67 13797.5 68 10711.5 69 7780.5 70 5636.0 71 4104.0 72 2856.5 73 1895.0 74 1226.0 75 785.5 76 511.5 77 330.0 78 221.0 79 140.0 80 82.0 81 53.5 82 35.0 83 23.5 84 17.5 85 12.5 86 8.0 87 5.5 88 5.0 89 5.5 90 4.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00356312882822988 3 0.0 4 0.0 5 0.001984257371409454 6 6.400830230353079E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 2.14165987849721E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 2.236167209403083E-5 48-49 5.188931242600133E-4 50-51 0.001854091633303444 52-53 0.004402395453426095 54-55 0.006068156142788684 56-57 0.006961776813365026 58-59 0.008307175340350033 60-61 0.007990634454001016 62-63 0.005821688160195609 64-65 0.0035774387375702133 66-67 0.0011226879492505998 68-69 6.41020109540475E-4 70-71 2.615404082421595E-4 72-73 6.415985314187026E-4 74-75 1.2703161664500355E-5 76-77 3.5930155370974366E-4 78-79 2.8531584399085275E-4 80-81 1.4419276107770717E-4 82-83 1.324845489894741E-5 84-85 1.3386707026695905E-4 86-87 1.2176270181153135E-4 88-89 2.7358976445973205E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 38.0 20-21 124.0 22-23 259.0 24-25 390.0 26-27 1162.0 28-29 3101.0 30-31 9845.0 32-33 12144.0 34-35 17007.0 36-37 26406.0 38-39 30602.0 40-41 29669.0 42-43 34163.0 44-45 39779.0 46-47 40114.0 48-49 37652.0 50-51 34717.0 52-53 34561.0 54-55 37846.0 56-57 38304.0 58-59 38244.0 60-61 37566.0 62-63 36805.0 64-65 38928.0 66-67 41188.0 68-69 41317.0 70-71 40772.0 72-73 38598.0 74-75 38965.0 76-77 40878.0 78-79 41218.0 80-81 40678.0 82-83 39084.0 84-85 39175.0 86-87 40135.0 88-89 41471.0 90-91 41945.0 92-93 41962.0 94-95 49161.0 96-97 146834.0 98-99 320522.0 100-101 3023563.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.67525599381231 #Duplication Level Percentage of deduplicated Percentage of total 1 91.86973643556047 81.4657239650739 2 5.9577666693445845 10.566129691110673 3 1.304293999876205 3.4697581299064773 4 0.4293134500347265 1.522779203336645 5 0.18639165447144537 0.8264163837682816 6 0.09397378726368232 0.4999889785389053 7 0.04907639754313734 0.30463034807742645 8 0.029926157605521513 0.2122967749264635 9 0.02111564297143581 0.16851915413694132 >10 0.056380682294723795 0.7180739383207729 >50 0.0013494291548517415 0.08235302597576065 >100 6.090486196695525E-4 0.11294948686268226 >500 3.3322631539284644E-5 0.015690481204129154 >1k 3.3322628008893956E-5 0.03469043876094346 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1336100767843594E-5 0.0 0.0 0.0 3 0.0 2.1336100767843594E-5 0.0 0.0 0.0 4 0.0 1.0668050383921798E-4 0.0 0.0 0.0 5 0.0 1.0668050383921798E-4 0.0 0.0 0.0 6 2.1336100767843594E-5 1.0668050383921798E-4 0.0 0.0 0.0 7 2.1336100767843594E-5 1.0668050383921798E-4 0.0 0.0 0.0 8 2.1336100767843594E-5 1.4935270537490516E-4 0.0 0.0 2.1336100767843594E-5 9 2.1336100767843594E-5 2.1336100767843595E-4 0.0 0.0 2.1336100767843594E-5 10-11 2.1336100767843594E-5 2.1336100767843595E-4 0.0 0.0 2.1336100767843594E-5 12-13 2.1336100767843594E-5 2.1336100767843595E-4 0.0 0.0 2.1336100767843594E-5 14-15 3.2004151151765394E-5 2.4536515883020137E-4 0.0 0.0 4.267220153568719E-5 16-17 8.534440307137437E-5 2.5603320921412315E-4 0.0 0.0 6.400830230353079E-5 18-19 8.534440307137437E-5 2.8803736036588854E-4 0.0 0.0 7.467635268745258E-5 20-21 8.534440307137437E-5 3.2004151151765394E-4 0.0 1.0668050383921797E-5 8.534440307137437E-5 22-23 8.534440307137437E-5 3.307095619015757E-4 0.0 2.1336100767843594E-5 9.601245345529618E-5 24-25 1.0668050383921798E-4 3.627137130533411E-4 0.0 2.1336100767843594E-5 1.2801660460706158E-4 26-27 1.2801660460706158E-4 3.840498138211847E-4 0.0 3.2004151151765394E-5 1.2801660460706158E-4 28-29 1.4935270537490516E-4 3.840498138211847E-4 0.0 2.3469710844627954E-4 1.3868465499098336E-4 30-31 1.4935270537490516E-4 4.693942168925591E-4 0.0 9.814606353208053E-4 1.6002075575882697E-4 32-33 1.4935270537490516E-4 4.693942168925591E-4 0.0 0.0028910416540428073 1.7068880614274875E-4 34-35 1.4935270537490516E-4 5.440705695800116E-4 0.0 0.005216676637737758 1.7068880614274875E-4 36-37 1.4935270537490516E-4 6.400830230353079E-4 0.0 0.008907822070574702 1.7068880614274875E-4 38-39 1.4935270537490516E-4 6.400830230353079E-4 0.0 0.01418850701061599 1.7068880614274875E-4 40-41 1.4935270537490516E-4 7.680996276423695E-4 0.0 0.01936251144681806 1.7068880614274875E-4 42-43 1.4935270537490516E-4 8.107718291780566E-4 0.0 0.025016578150296613 1.7068880614274875E-4 44-45 1.4935270537490516E-4 9.067842826333528E-4 0.0 0.03103335856682851 1.7068880614274875E-4 46-47 1.4935270537490516E-4 9.601245345529617E-4 0.0 0.037530201250636885 1.7068880614274875E-4 48-49 1.6002075575882697E-4 9.601245345529617E-4 0.0 0.043525645566400935 1.7068880614274875E-4 50-51 1.7068880614274875E-4 0.0010348008872404144 0.0 0.049691778688307736 1.7068880614274875E-4 52-53 1.7068880614274875E-4 0.0010454689376243362 0.0 0.05611394501942865 1.7068880614274875E-4 54-55 1.7068880614274875E-4 0.0010668050383921797 0.0 0.0626961321063084 1.7068880614274875E-4 56-57 1.7068880614274875E-4 0.0010881411391600233 0.0 0.06992907026660738 1.7068880614274875E-4 58-59 1.7068880614274875E-4 0.001098809189543945 0.0 0.07602052703582673 1.7068880614274875E-4 60-61 1.8135685652667056E-4 0.0011201452903117886 0.0 0.08231467676234058 1.7068880614274875E-4 62-63 2.1336100767843595E-4 0.0011521494414635542 0.0 0.08889686384922033 1.7068880614274875E-4 64-65 2.1336100767843595E-4 0.0012801660460706158 0.0 0.09525502187803772 1.7068880614274875E-4 66-67 2.1336100767843595E-4 0.0012908340964545375 0.0 0.10152783550378375 1.8135685652667056E-4 68-69 2.1336100767843595E-4 0.0013441743483741464 0.0 0.10809935454027958 1.9202490691059236E-4 70-71 2.3469710844627954E-4 0.0013441743483741464 0.0 0.11328402702686556 1.9202490691059236E-4 72-73 2.773693099819667E-4 0.0013441743483741464 0.0 0.11690049610701506 2.1336100767843595E-4 74-75 2.773693099819667E-4 0.00136551044914199 0.0 0.11997289461758454 2.1336100767843595E-4 76-77 2.773693099819667E-4 0.0013761784995259118 0.0 0.12340800684120734 2.1336100767843595E-4 78-79 2.773693099819667E-4 0.0013868465499098336 0.0 0.12552028081722388 2.1336100767843595E-4 80-81 2.773693099819667E-4 0.0013868465499098336 0.0 0.12613902773949132 2.1336100767843595E-4 82-83 2.773693099819667E-4 0.0013868465499098336 0.0 0.12654441365408037 2.1336100767843595E-4 84-85 2.880373603658885E-4 0.0013868465499098336 0.0 0.12678977881291056 2.1336100767843595E-4 86-87 2.987054107498103E-4 0.0013975146002937556 0.0 0.12684311906483017 2.1336100767843595E-4 88 2.987054107498103E-4 0.001472190952981208 0.0 0.12684311906483017 2.1336100767843595E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5550 0.0 47.670284 1 GTATCAA 9785 0.0 36.456177 1 ATCAACG 11005 0.0 31.525803 3 TCAACGC 11110 0.0 31.266077 4 CAACGCA 11355 0.0 30.591467 5 TATCAAC 11450 0.0 30.56148 2 AACGCAG 11765 0.0 29.52349 6 ACGCAGA 13620 0.0 25.56484 7 CGCAGAG 14010 0.0 24.853186 8 GTGGTAT 2660 0.0 22.51076 1 GTACATG 13075 0.0 21.761349 1 TACATGG 12625 0.0 21.561518 2 GCAGAGT 16715 0.0 20.805773 9 ACATGGG 13070 0.0 20.339155 3 TGGTATC 2600 0.0 19.600203 2 GAGTACT 9985 0.0 19.43455 12-13 CATGGGG 10310 0.0 19.11144 4 GCGTACA 495 0.0 18.87427 1 CAGAGTA 16230 0.0 18.667315 10-11 AGAGTAC 14880 0.0 17.478716 10-11 >>END_MODULE