##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138875_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4917345 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.068482077218498 32.0 25.0 33.0 18.0 33.0 2 31.730149094684226 33.0 32.0 33.0 27.0 33.0 3 31.33382262176032 33.0 31.0 33.0 29.0 33.0 4 32.496274310629005 33.0 33.0 33.0 31.0 34.0 5 33.13002606081127 33.0 33.0 34.0 33.0 34.0 6 37.301612760544565 38.0 38.0 38.0 36.0 38.0 7 37.352977470565925 38.0 38.0 38.0 37.0 38.0 8 37.53686145674139 38.0 38.0 38.0 37.0 38.0 9 37.575270801621606 38.0 38.0 38.0 38.0 38.0 10-11 37.5691560181358 38.0 38.0 38.0 37.5 38.0 12-13 37.597334638915925 38.0 38.0 38.0 38.0 38.0 14-15 37.593306143864226 38.0 38.0 38.0 38.0 38.0 16-17 37.61089276835365 38.0 38.0 38.0 38.0 38.0 18-19 37.6024743026979 38.0 38.0 38.0 38.0 38.0 20-21 37.59700897962986 38.0 38.0 38.0 38.0 38.0 22-23 37.601350700848315 38.0 38.0 38.0 38.0 38.0 24-25 37.55654365568266 38.0 38.0 38.0 38.0 38.0 26-27 37.553481775197156 38.0 38.0 38.0 38.0 38.0 28-29 37.54474172271935 38.0 38.0 38.0 38.0 38.0 30-31 37.53819783676273 38.0 38.0 38.0 38.0 38.0 32-33 37.53158187557423 38.0 38.0 38.0 38.0 38.0 34-35 37.51186329142175 38.0 38.0 38.0 38.0 38.0 36-37 37.48665203207588 38.0 38.0 38.0 38.0 38.0 38-39 37.46407380833399 38.0 38.0 38.0 37.5 38.0 40-41 37.4419193400351 38.0 38.0 38.0 37.5 38.0 42-43 37.417921640904524 38.0 38.0 38.0 37.0 38.0 44-45 37.38094199330391 38.0 38.0 38.0 37.0 38.0 46-47 37.33726368294039 38.0 38.0 38.0 37.0 38.0 48-49 37.289938989801925 38.0 38.0 38.0 37.0 38.0 50-51 37.273628968665555 38.0 38.0 38.0 37.0 38.0 52-53 37.26809998676008 38.0 38.0 38.0 37.0 38.0 54-55 37.25001265414426 38.0 38.0 38.0 37.0 38.0 56-57 37.22460190539274 38.0 38.0 38.0 37.0 38.0 58-59 37.233355436051724 38.0 38.0 38.0 37.0 38.0 60-61 37.25685138188602 38.0 38.0 38.0 37.0 38.0 62-63 37.266401595628324 38.0 38.0 38.0 37.0 38.0 64-65 37.27962173478727 38.0 38.0 38.0 37.0 38.0 66-67 37.29272279078316 38.0 38.0 38.0 37.0 38.0 68-69 37.29623131922148 38.0 38.0 38.0 37.0 38.0 70-71 37.27441685813792 38.0 38.0 38.0 37.0 38.0 72-73 37.26119509288554 38.0 38.0 38.0 37.0 38.0 74-75 37.25075582335074 38.0 38.0 38.0 37.0 38.0 76-77 37.258033670617706 38.0 38.0 38.0 37.0 38.0 78-79 37.26338774596306 38.0 38.0 38.0 37.0 38.0 80-81 37.260473371522 38.0 38.0 38.0 37.0 38.0 82-83 37.26747135465385 38.0 38.0 38.0 37.0 38.0 84-85 37.26347048314858 38.0 38.0 38.0 37.0 38.0 86-87 37.24249762109171 38.0 38.0 38.0 37.0 38.0 88-89 37.21044375685475 38.0 38.0 38.0 37.0 38.0 90-91 37.21890491645358 38.0 38.0 38.0 36.5 38.0 92-93 37.206238973666544 38.0 38.0 38.0 36.0 38.0 94-95 37.194150487526386 38.0 38.0 38.0 36.0 38.0 96-97 37.189473331031564 38.0 38.0 38.0 36.0 38.0 98-99 37.22761491313502 38.0 38.0 38.0 36.0 38.0 100 35.722851493689575 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 6.0 20 37.0 21 93.0 22 290.0 23 680.0 24 1428.0 25 2851.0 26 5258.0 27 8656.0 28 13729.0 29 20918.0 30 29139.0 31 38512.0 32 48743.0 33 63688.0 34 91810.0 35 170315.0 36 603418.0 37 3817770.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.47919456535996 19.9335820447823 13.758684818738567 22.82853857111917 2 14.230545141738071 21.249739442727734 42.40932861127295 22.110386804261243 3 18.1685035318856 27.293407316346524 30.72853338539395 23.809555766373926 4 12.034726056438993 18.268598196791157 40.2415124421817 29.455163304588144 5 12.59555056609376 38.63027071219822 35.62902809216133 13.145150629546698 6 28.47326289827657 38.64674479693607 19.501588561139624 13.378403743647738 7 25.402630891263478 33.6977779675821 23.976007377965143 16.92358376318928 8 23.923173989215726 36.83001701121235 21.86141098499292 17.385398014579007 9 25.830895703046195 16.85704721898651 22.027623042032445 35.28443403593485 10-11 23.80293634064724 27.164374271075143 29.287908413991698 19.74478097428592 12-13 24.858882181339727 25.030509350065937 29.516863266661176 20.593745201933157 14-15 22.007414570260984 26.137153280886334 27.543867676561234 24.31156447229145 16-17 20.92221513845378 29.248415557582398 28.200716036804412 21.62865326715941 18-19 20.96900868253092 28.229471391574112 30.381923578679142 20.419596347215823 20-21 22.05359018530769 27.30738796501563 30.127452549488222 20.51156930018846 22-23 21.850620591490127 27.175064852448795 29.990582908889717 20.983731647171357 24-25 21.48518703751123 27.32981053913558 30.11844634484509 21.0665560785081 26-27 21.313177430924917 27.5351702908364 30.069402327541518 21.08224995069716 28-29 21.077775211129442 27.674477531594366 30.11274144161288 21.135005815663316 30-31 21.56037456915496 27.38132853977881 30.0214189204065 21.036877970659727 32-33 21.26905899762635 27.547685205544177 29.944028496071358 21.239227300758117 34-35 21.413336121655195 27.591002896102278 30.011193687984317 20.98446729425821 36-37 21.433857637786875 27.49696908502901 29.963546342589144 21.105626934594966 38-39 21.28647127030231 27.580059280267104 30.017249320940298 21.116220128490287 40-41 21.41116832964617 27.420181828829467 29.96966359686394 21.198986244660425 42-43 21.458412154296177 27.502416880735268 29.643631214792492 21.39553975017606 44-45 21.420843331563642 27.70130801326894 29.566134629028674 21.311714026138752 46-47 21.52566265278217 27.684402873012136 29.297153515551177 21.49278095865451 48-49 21.525827440230387 27.77085871401831 29.209922161912715 21.493391683838592 50-51 21.48069768395905 27.850707338554365 29.047163989175495 21.62143098831109 52-53 21.587612103236093 27.859183903371004 28.94221325029373 21.610990743099173 54-55 21.58105613118936 27.834616538872414 28.895745313533833 21.68858201640439 56-57 21.632388211525726 27.850116421110133 28.85602214862103 21.661473218743115 58-59 21.512477501832056 27.91501942089132 28.92503950046589 21.647463576810736 60-61 21.631015810906344 27.93450590457337 28.933199505761426 21.501278778758863 62-63 21.604876430150632 27.876750905106107 28.856104395418708 21.662268269324557 64-65 21.540907383946823 27.869639358059977 28.841406777787032 21.748046480206167 66-67 21.627964272967322 27.915787795825857 28.73828382972649 21.717964101480327 68-69 21.593892227716687 27.8631464577845 28.831612889588797 21.711348424910017 70-71 21.575058435626065 27.610508304016694 28.88045977857055 21.93397348178669 72-73 21.711008340279065 27.736127673571083 28.82108917137009 21.731774814779765 74-75 21.617869585199188 27.870181821213478 28.68051958743978 21.83142900614755 76-77 21.69278833795192 27.797468401225384 28.608336269873135 21.90140699094956 78-79 21.668249717286887 27.78480116089784 28.61765002807717 21.92929909373811 80-81 21.629116329743805 27.855439919687335 28.626262187161654 21.889181563407202 82-83 21.749755910345886 27.759963233242217 28.701966704586408 21.78831415182549 84-85 21.96671808447992 27.8157330125972 28.459221752906416 21.758327150016466 86-87 21.66787226451218 27.967735963732064 28.494993216121934 21.869398555633822 88-89 21.863486995500743 27.787188050883593 28.43196300692068 21.91736194669498 90-91 21.93700335323178 27.755869906042996 28.47516350432851 21.831963236396714 92-93 21.923273657289002 27.834244450942148 28.40232288724966 21.840159004519194 94-95 21.692537423355297 27.92035188738161 28.452361359422778 21.93474932984031 96-97 21.833027082089636 28.044651186166842 28.444299865527306 21.67802186621622 98-99 22.821438610748395 29.93337559510331 28.69918172621827 18.546004067930024 100 29.007751736216008 40.84864732714297 30.143600936641015 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1553.0 1 1405.0 2 1950.5 3 2881.5 4 3567.5 5 4671.0 6 5753.0 7 7314.0 8 9369.0 9 10513.5 10 10245.5 11 9654.0 12 10245.5 13 12301.5 14 16105.5 15 20267.5 16 23182.5 17 24724.5 18 24367.0 19 22526.5 20 20541.0 21 19449.5 22 20339.5 23 23947.5 24 30425.0 25 39304.0 26 50866.5 27 63848.0 28 77485.0 29 92061.5 30 105645.0 31 118167.5 32 130475.0 33 143232.5 34 155266.5 35 167027.5 36 178188.5 37 187445.0 38 193352.5 39 196008.0 40 199245.0 41 202810.0 42 204578.5 43 205684.0 44 208432.5 45 210506.5 46 209789.0 47 209559.0 48 207592.5 49 200625.0 50 192700.5 51 185167.0 52 176372.5 53 167214.5 54 156917.0 55 144795.5 56 131110.5 57 115649.0 58 101491.5 59 87939.5 60 74014.5 61 60596.0 62 47454.0 63 36955.5 64 29549.5 65 22576.5 66 15958.0 67 11560.0 68 8693.0 69 6243.5 70 4442.0 71 3286.5 72 2410.0 73 1683.5 74 1168.5 75 795.0 76 523.5 77 327.5 78 238.5 79 172.5 80 105.0 81 63.5 82 47.0 83 34.0 84 25.0 85 21.0 86 17.0 87 11.5 88 6.0 89 2.0 90 2.0 91 3.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.006405895864536656 6 4.067235469547083E-5 7 0.0 8 0.0 9 2.0336177347735415E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.999873290811519E-4 26-27 0.0 28-29 7.53028599619171E-4 30-31 0.002751950776366084 32-33 1.7385600448016698E-4 34-35 3.081395999752256E-5 36-37 2.893713191063924E-4 38-39 6.256893662945102E-4 40-41 6.214279086222911E-4 42-43 2.0209326072157929E-4 44-45 0.0 46-47 0.0016456924436233176 48-49 6.624043888265186E-5 50-51 0.002325007682026584 52-53 0.0017417744700651174 54-55 0.0030318680219841325 56-57 0.0026987749067677517 58-59 0.004293280816108108 60-61 0.0032311448148025397 62-63 0.0032711797160880586 64-65 0.0051139833839374165 66-67 0.0019492386187596451 68-69 1.3758027809226682E-4 70-71 9.13196951596376E-4 72-73 0.006943106896330929 74-75 0.006421741698791658 76-77 0.004766011289505745 78-79 0.002958927277734688 80-81 5.4338715492538346E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0023998135330514678 90-91 3.0632352402750666E-4 92-93 0.0 94-95 1.6533208602799584E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 41.0 20-21 124.0 22-23 323.0 24-25 571.0 26-27 1760.0 28-29 5207.0 30-31 15732.0 32-33 19774.0 34-35 26387.0 36-37 40228.0 38-39 48634.0 40-41 46033.0 42-43 50448.0 44-45 58970.0 46-47 59573.0 48-49 57090.0 50-51 53387.0 52-53 49942.0 54-55 52805.0 56-57 54263.0 58-59 53683.0 60-61 52190.0 62-63 50756.0 64-65 52844.0 66-67 54937.0 68-69 55549.0 70-71 54659.0 72-73 50453.0 74-75 50742.0 76-77 52305.0 78-79 53684.0 80-81 53232.0 82-83 49946.0 84-85 48757.0 86-87 50089.0 88-89 51613.0 90-91 50941.0 92-93 49962.0 94-95 55062.0 96-97 138239.0 98-99 994892.0 100-101 2151518.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.80264818488769 #Duplication Level Percentage of deduplicated Percentage of total 1 89.47620550738705 75.87819176561653 2 7.243956494206105 12.286133880895854 3 1.881091707265502 4.785646747642383 4 0.6819237417556858 2.3131575664411854 5 0.30581781064571767 1.29670801024307 6 0.15927665637220242 0.8104249352638281 7 0.08082403174800251 0.4797864350447034 8 0.046767488210144655 0.31728054793406235 9 0.031936056120234535 0.24374359184193706 >10 0.08896324126771207 1.1327609811035892 >50 0.0018135482920192043 0.10355378636521706 >100 0.0012708401906356267 0.23541416002565715 >500 1.1465740424668992E-4 0.0780777096580931 >1k 3.821913474762909E-5 0.03911988192386345 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0336177347735415E-5 0.0 0.0 0.0 3 0.0 2.0336177347735415E-5 0.0 0.0 0.0 4 0.0 1.0168088673867708E-4 0.0 0.0 0.0 5 0.0 1.0168088673867708E-4 0.0 0.0 0.0 6 0.0 1.0168088673867708E-4 0.0 0.0 0.0 7 0.0 1.0168088673867708E-4 0.0 0.0 0.0 8 0.0 1.0168088673867708E-4 0.0 0.0 0.0 9 0.0 2.2369795082508956E-4 0.0 0.0 0.0 10-11 0.0 2.2369795082508956E-4 0.0 0.0 1.0168088673867707E-5 12-13 0.0 2.2369795082508956E-4 0.0 0.0 2.0336177347735415E-5 14-15 0.0 3.152107488898989E-4 0.0 0.0 5.084044336933854E-5 16-17 0.0 3.2537883756376663E-4 0.0 0.0 6.100853204320624E-5 18-19 0.0 3.4571501491150207E-4 0.0 0.0 7.117662071707396E-5 20-21 0.0 3.6605119225923744E-4 0.0 0.0 8.134470939094166E-5 22-23 0.0 3.863873696069729E-4 0.0 0.0 8.134470939094166E-5 24-25 0.0 4.270597243024437E-4 0.0 2.0336177347735415E-5 1.0168088673867708E-4 26-27 0.0 4.473959016501791E-4 0.0 6.100853204320624E-5 1.0168088673867708E-4 28-29 0.0 4.473959016501791E-4 0.0 5.89749143084327E-4 1.0168088673867708E-4 30-31 0.0 5.490767883888562E-4 0.0 0.001911600670687129 1.0168088673867708E-4 32-33 0.0 5.592448770627239E-4 0.0 0.004840010208761029 1.0168088673867708E-4 34-35 0.0 6.304214977797978E-4 0.0 0.008876741412286508 1.2201706408641248E-4 36-37 0.0 6.914300298230041E-4 0.0 0.015191124478758354 1.2201706408641248E-4 38-39 0.0 7.117662071707395E-4 0.0 0.024200051043805144 1.3218515276028017E-4 40-41 0.0 7.524385618662104E-4 0.0 0.033554692623763434 1.4235324143414789E-4 42-43 0.0 7.626066505400781E-4 0.0 0.04242126594737608 1.4235324143414789E-4 44-45 0.0 8.134470939094166E-4 0.0 0.05208095018755039 1.4235324143414789E-4 46-47 0.0 8.541194486048874E-4 0.0 0.06212702179733169 1.6268941878188332E-4 48-49 0.0 8.541194486048874E-4 0.0 0.07293570005765307 1.6268941878188332E-4 50-51 0.0 0.0010066407787129028 0.0 0.08367320169725737 1.6268941878188332E-4 52-53 0.0 0.0010168088673867706 0.0 0.09457339275564354 1.6268941878188332E-4 54-55 0.0 0.0010269769560606384 0.0 0.10541257528198653 1.7285750745575103E-4 56-57 0.0 0.0010574812220822416 0.0 0.11523494894094272 1.9319368480348644E-4 58-59 0.0 0.0010574812220822416 0.0 0.12510816304326827 2.0336177347735415E-4 60-61 0.0 0.0010676493107561092 0.0 0.13414759387433667 2.0336177347735415E-4 62-63 0.0 0.0010981535767777123 0.0 0.1425972755623207 2.0336177347735415E-4 64-65 0.0 0.0012608429955595958 0.0 0.15131132755582535 2.0336177347735415E-4 66-67 0.0 0.0012608429955595958 0.0 0.1600457157266777 2.1352986215122184E-4 68-69 0.0 0.0013015153502550665 0.0 0.1682716994638367 2.2369795082508956E-4 70-71 0.0 0.0013116834389289341 0.0 0.17450473782091758 2.5420221684669265E-4 72-73 0.0 0.001321851527602802 0.0 0.1797311353992856 3.050426602160312E-4 74-75 0.0 0.0013523557936244049 0.0 0.1840424049970055 3.050426602160312E-4 76-77 0.0 0.0013625238822982727 0.0 0.18836384268339929 3.050426602160312E-4 78-79 0.0 0.0013625238822982727 0.0 0.19088552867451847 3.050426602160312E-4 80-81 0.0 0.0013726919709721405 0.0 0.19173964812312336 3.152107488898989E-4 82-83 0.0 0.0014031962369937436 0.0 0.1923192291775338 3.2537883756376663E-4 84-85 0.0 0.0014031962369937436 0.0 0.19264460801509758 3.2537883756376663E-4 86-87 0.0 0.001423532414341479 0.0 0.19274628890183626 3.2537883756376663E-4 88 0.0 0.0015252133010801561 0.0 0.19274628890183626 3.2537883756376663E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7770 0.0 51.916576 1 GTATCAA 15245 0.0 38.444275 1 ATCAACG 18450 0.0 31.500189 3 TATCAAC 18660 0.0 31.43042 2 TCAACGC 18575 0.0 31.376219 4 CAACGCA 18860 0.0 30.880411 5 AACGCAG 19450 0.0 29.982962 6 ACGCAGA 22205 0.0 26.189323 7 CGCAGAG 22495 0.0 25.9062 8 GTGGTAT 3375 0.0 23.614065 1 GCAGAGT 25165 0.0 23.14132 9 GGACCGA 1005 0.0 22.771526 6 TGGTATC 3355 0.0 22.536636 2 CCGAACC 945 0.0 22.055075 9 GTACATG 20415 0.0 21.401205 1 TACATGG 20370 0.0 21.087332 2 ACATGGG 20525 0.0 20.549746 3 GAGTACT 14725 0.0 20.273794 12-13 TGCGCGA 470 1.337794E-7 19.89678 94 ACCGAAC 1075 0.0 19.768106 8 >>END_MODULE