##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138874_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4979504 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.737304157201198 32.0 25.0 33.0 18.0 33.0 2 31.621158653552644 33.0 32.0 33.0 27.0 33.0 3 31.327362323637054 33.0 31.0 33.0 29.0 33.0 4 32.52255405357642 33.0 33.0 33.0 31.0 34.0 5 33.135619732407086 33.0 33.0 34.0 33.0 34.0 6 37.280896049084404 38.0 38.0 38.0 36.0 38.0 7 37.34683574910272 38.0 38.0 38.0 37.0 38.0 8 37.50698643880997 38.0 38.0 38.0 37.0 38.0 9 37.548606447549794 38.0 38.0 38.0 37.0 38.0 10-11 37.5446525396907 38.0 38.0 38.0 37.5 38.0 12-13 37.57447990803904 38.0 38.0 38.0 38.0 38.0 14-15 37.56867812537152 38.0 38.0 38.0 38.0 38.0 16-17 37.582100948206886 38.0 38.0 38.0 38.0 38.0 18-19 37.57491378659401 38.0 38.0 38.0 38.0 38.0 20-21 37.56818159649521 38.0 38.0 38.0 38.0 38.0 22-23 37.57362175099957 38.0 38.0 38.0 38.0 38.0 24-25 37.530399469474474 38.0 38.0 38.0 38.0 38.0 26-27 37.53001338709004 38.0 38.0 38.0 38.0 38.0 28-29 37.52215656439628 38.0 38.0 38.0 38.0 38.0 30-31 37.5179239777014 38.0 38.0 38.0 38.0 38.0 32-33 37.51273426308437 38.0 38.0 38.0 38.0 38.0 34-35 37.49482754817201 38.0 38.0 38.0 38.0 38.0 36-37 37.47146835992085 38.0 38.0 38.0 37.5 38.0 38-39 37.449936472658095 38.0 38.0 38.0 37.0 38.0 40-41 37.43523970861992 38.0 38.0 38.0 37.0 38.0 42-43 37.41792767635299 38.0 38.0 38.0 37.0 38.0 44-45 37.38820785672533 38.0 38.0 38.0 37.0 38.0 46-47 37.35628359724065 38.0 38.0 38.0 37.0 38.0 48-49 37.31704843415065 38.0 38.0 38.0 37.0 38.0 50-51 37.30079486148743 38.0 38.0 38.0 37.0 38.0 52-53 37.29204850366193 38.0 38.0 38.0 37.0 38.0 54-55 37.270130574316866 38.0 38.0 38.0 37.0 38.0 56-57 37.23790359096698 38.0 38.0 38.0 37.0 38.0 58-59 37.24255543965236 38.0 38.0 38.0 37.0 38.0 60-61 37.25712108786857 38.0 38.0 38.0 37.0 38.0 62-63 37.26312976197392 38.0 38.0 38.0 37.0 38.0 64-65 37.26999574139413 38.0 38.0 38.0 37.0 38.0 66-67 37.2769091040891 38.0 38.0 38.0 37.0 38.0 68-69 37.27751125937926 38.0 38.0 38.0 37.0 38.0 70-71 37.2485401369981 38.0 38.0 38.0 37.0 38.0 72-73 37.22913763739297 38.0 38.0 38.0 37.0 38.0 74-75 37.21566958696589 38.0 38.0 38.0 37.0 38.0 76-77 37.219016415126 38.0 38.0 38.0 37.0 38.0 78-79 37.22250942384864 38.0 38.0 38.0 37.0 38.0 80-81 37.21491559497221 38.0 38.0 38.0 37.0 38.0 82-83 37.219024533937045 38.0 38.0 38.0 37.0 38.0 84-85 37.21219301684195 38.0 38.0 38.0 37.0 38.0 86-87 37.18649228320582 38.0 38.0 38.0 36.0 38.0 88-89 37.14865544658312 38.0 38.0 38.0 36.0 38.0 90-91 37.15547088563025 38.0 38.0 38.0 36.0 38.0 92-93 37.139694318360505 38.0 38.0 38.0 36.0 38.0 94-95 37.124213384810034 38.0 38.0 38.0 36.0 38.0 96-97 37.120719887298684 38.0 38.0 38.0 36.0 38.0 98-99 37.15786435724018 38.0 38.0 38.0 36.0 38.0 100 35.61469975576229 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 13.0 20 34.0 21 107.0 22 258.0 23 759.0 24 1622.0 25 3218.0 26 5536.0 27 9117.0 28 14459.0 29 21402.0 30 29256.0 31 39060.0 32 50700.0 33 67220.0 34 98187.0 35 178691.0 36 597527.0 37 3862333.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.273607170513365 19.64661540587175 13.662806576719289 23.416970846895595 2 14.150063942111505 21.106057952759954 42.38663127893862 22.357246826189918 3 18.310659053592488 26.446790684373383 30.61668391068669 24.625866351347444 4 12.10486024310855 18.107446042818722 40.218584019613196 29.569109694459527 5 12.83983886561651 38.1781162347832 35.87800685973926 13.104038039861038 6 28.86824827061019 38.62741695856332 19.44375160407607 13.060583166750412 7 25.69382412384848 33.173685571896314 23.91386772658482 17.218622577670388 8 23.49461381989327 37.37160114172037 21.894634866170378 17.239150172215982 9 25.30779690575421 17.201221568185247 22.041606177004482 35.44937534905606 10-11 23.683919861078508 27.12769728223881 29.586527008819957 19.60185584786273 12-13 24.51102559612363 24.7519030007808 29.675194557530226 21.06187684556534 14-15 21.702382405958506 26.061692088207984 27.390418804764487 24.845506701069024 16-17 21.145901278520913 29.217679110208568 28.04456026142363 21.591859349846892 18-19 21.144505557179993 28.389333556113222 29.832931151375718 20.633229735331067 20-21 22.026975803111277 27.587053823580355 29.605886177473973 20.780084195834387 22-23 21.742514859422908 27.499200695996972 29.441258385662977 21.31702605891714 24-25 21.461736136146587 27.57257666881902 29.62700678543777 21.33868040959662 26-27 21.430328962062987 27.728394992294973 29.531343149275052 21.309932896366988 28-29 21.35240498225596 27.81135005706043 29.543175991760872 21.29306896892274 30-31 21.64707394789394 27.65990471082298 29.44256314286094 21.250458198422148 32-33 21.500634828801985 27.741988387897948 29.39876649152896 21.35861029177111 34-35 21.53552335590404 27.76180751359992 29.461999588641984 21.24066954185406 36-37 21.518118843006654 27.692036132896952 29.479554432831733 21.31029059126466 38-39 21.33878515999282 27.811941086901914 29.5358954226609 21.313378330444362 40-41 21.624652684228185 27.670664069408605 29.40230488746225 21.302378358900953 42-43 21.56745644753872 27.719601843556763 29.234509904707494 21.47843180419702 44-45 21.559272262537053 27.879212102962835 29.137245071964994 21.42427056253511 46-47 21.638600165320753 27.790871158793962 28.922995411509955 21.647533264375333 48-49 21.595948338003716 27.836382355100447 28.96258699811997 21.605082308775867 50-51 21.543359667761713 27.969268045110418 28.84779775714007 21.639574529987797 52-53 21.66524689990234 27.980489833211603 28.738267775124264 21.615995491761797 54-55 21.720631553061214 27.851292469404637 28.75176719366056 21.676308783873584 56-57 21.741401636042358 27.968830208619007 28.65565457265099 21.634113582687647 58-59 21.59020516811604 28.054027227918205 28.779063603243888 21.576704000721865 60-61 21.733630787027145 28.058852523940182 28.68708384262306 21.520432846409616 62-63 21.65084684836958 28.06784136191175 28.65376894472127 21.627542844997404 64-65 21.60481763108166 28.017115219334553 28.702903598518954 21.675163551064834 66-67 21.739497068299706 28.033723227028446 28.537078320001363 21.689701384670478 68-69 21.708372309875077 28.035759556881484 28.61310608745474 21.642762045788707 70-71 21.69279999845923 27.80522143415501 28.676419429803772 21.825559137581998 72-73 21.736363935332758 27.804855767883918 28.678908603257234 21.77987169352609 74-75 21.67140669653292 27.94476048748541 28.563057914076524 21.82077490190515 76-77 21.732799014054898 27.92305174717323 28.475977053064288 21.868172185707582 78-79 21.73947504478711 27.930763039800137 28.44533754744435 21.884424367968407 80-81 21.704147626475123 27.9186493335561 28.51999841854284 21.85720462142594 82-83 21.813815198184102 27.91956380448637 28.502777070826536 21.763843926502997 84-85 21.962024911597418 27.871274196889946 28.363981432683815 21.802719458828815 86-87 21.735886243946993 27.94621492187796 28.46632417083693 21.851574663338116 88-89 21.87409182842759 27.885235185524333 28.373077884526694 21.867595101521385 90-91 21.922542049719254 27.985549693941447 28.311614198647987 21.780294057691314 92-93 21.949541102084126 27.96689707271839 28.313369590512792 21.770192234684696 94-95 21.815529846018542 28.060307230016086 28.328662938123696 21.79549998584168 96-97 21.923615441269497 28.123107909053118 28.373824079596595 21.57945257008079 98-99 22.953652505961784 30.05235632435453 28.568182403937787 18.4258087657459 100 28.936172573594586 41.09193844851228 29.971888977893137 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 857.0 1 808.5 2 1272.0 3 2000.0 4 2553.0 5 3350.5 6 4107.5 7 5228.0 8 6676.5 9 7474.0 10 7351.0 11 7271.0 12 7987.0 13 9345.5 14 11780.5 15 14546.0 16 16711.5 17 18023.0 18 17984.0 19 17014.0 20 16225.0 21 16465.0 22 18540.5 23 22968.0 24 29564.5 25 38275.5 26 49849.0 27 62628.5 28 75695.0 29 90166.0 30 103093.5 31 113995.5 32 125401.5 33 137800.5 34 150211.5 35 161914.0 36 173908.0 37 183136.0 38 189185.0 39 195916.5 40 202954.0 41 207222.5 42 210013.5 43 214978.0 44 217514.5 45 216599.0 46 213893.5 47 210797.5 48 207239.0 49 201099.0 50 194583.0 51 186756.0 52 176027.0 53 164810.5 54 153102.0 55 139695.5 56 126204.0 57 112549.5 58 99556.0 59 85963.5 60 71628.5 61 58019.0 62 45419.0 63 35025.5 64 26491.0 65 19764.0 66 14509.5 67 10789.5 68 8114.5 69 5828.5 70 4210.0 71 2994.5 72 2067.0 73 1371.5 74 888.5 75 579.5 76 384.5 77 256.5 78 167.0 79 111.0 80 72.5 81 40.5 82 22.5 83 17.0 84 17.0 85 15.5 86 12.5 87 11.5 88 9.0 89 4.5 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.006145190364341509 6 4.0164642904192865E-5 7 0.0 8 2.0082321452096432E-5 9 6.02469643562893E-5 10-11 2.0082321452096432E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.326474397410845E-4 26-27 1.0043047514561665E-5 28-29 6.329402606869953E-4 30-31 0.002534864445106102 32-33 1.714660173013246E-4 34-35 6.073195365180225E-5 36-37 2.950362991297752E-4 38-39 5.841794369658089E-4 40-41 5.268593408493779E-4 42-43 1.1454789507829349E-4 44-45 0.0 46-47 0.001550787438876669 48-49 2.1466436689574933E-5 50-51 0.0020161788597793133 52-53 0.0014443661349976807 54-55 0.00285018657122445 56-57 0.002489038742167062 58-59 0.003699431144788968 60-61 0.002849092136790612 62-63 0.0029244287318445075 64-65 0.004583268093497739 66-67 0.0016700210175673274 68-69 1.4276011696336382E-4 70-71 6.86120138673306E-4 72-73 0.00655253083586909 74-75 0.005935460608983184 76-77 0.004856759226534941 78-79 0.0024949360987641875 80-81 3.826104567692909E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0022189973981587134 90-91 2.0303697289740662E-4 92-93 0.0 94-95 1.2492620678368737E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 25.0 20-21 97.0 22-23 232.0 24-25 401.0 26-27 1255.0 28-29 3843.0 30-31 12740.0 32-33 16332.0 34-35 22111.0 36-37 33786.0 38-39 39452.0 40-41 37877.0 42-43 42172.0 44-45 49105.0 46-47 49820.0 48-49 46619.0 50-51 43695.0 52-53 42712.0 54-55 45929.0 56-57 46687.0 58-59 45888.0 60-61 44999.0 62-63 44230.0 64-65 45940.0 66-67 48296.0 68-69 49286.0 70-71 49277.0 72-73 45316.0 74-75 44915.0 76-77 46566.0 78-79 47726.0 80-81 46675.0 82-83 44681.0 84-85 43539.0 86-87 45382.0 88-89 46300.0 90-91 46116.0 92-93 45352.0 94-95 51304.0 96-97 144491.0 98-99 1075126.0 100-101 2343209.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.73443740700965 #Duplication Level Percentage of deduplicated Percentage of total 1 90.20861818402291 78.24193747454969 2 7.052323310653996 12.233585895238283 3 1.6691857274875106 4.34327655004318 4 0.5606138661853292 1.944981131446125 5 0.22653754780208235 0.9824303380088585 6 0.10896770307773887 0.5670751453189053 7 0.06055159801130971 0.36763361513244464 8 0.03398357247428503 0.23580368317099612 9 0.02151787363265055 0.16797065973507652 >10 0.05575173453619889 0.6774892432904503 >50 0.0010375853296989168 0.0643334296604739 >100 8.447809154417266E-4 0.13878099664172888 >500 6.651587088321375E-5 0.034701837763778255 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0082321452096432E-5 0.0 2.0082321452096432E-5 0.0 3 0.0 2.0082321452096432E-5 0.0 2.0082321452096432E-5 0.0 4 0.0 6.02469643562893E-5 0.0 2.0082321452096432E-5 0.0 5 0.0 8.032928580838573E-5 0.0 2.0082321452096432E-5 0.0 6 0.0 8.032928580838573E-5 0.0 2.0082321452096432E-5 0.0 7 0.0 8.032928580838573E-5 0.0 2.0082321452096432E-5 0.0 8 0.0 8.032928580838573E-5 0.0 2.0082321452096432E-5 0.0 9 0.0 1.6065857161677146E-4 0.0 4.0164642904192865E-5 0.0 10-11 0.0 1.6065857161677146E-4 0.0 4.0164642904192865E-5 0.0 12-13 0.0 1.6065857161677146E-4 0.0 4.0164642904192865E-5 0.0 14-15 0.0 1.8074089306886792E-4 0.0 4.0164642904192865E-5 0.0 16-17 0.0 1.8074089306886792E-4 0.0 4.0164642904192865E-5 0.0 18-19 0.0 1.8074089306886792E-4 0.0 5.0205803630241086E-5 0.0 20-21 0.0 1.8074089306886792E-4 0.0 1.0041160726048217E-4 0.0 22-23 0.0 2.0082321452096434E-4 0.0 1.204939287125786E-4 0.0 24-25 0.0 2.409878574251572E-4 0.0 1.4057625016467503E-4 0.0 26-27 0.0 2.6107017887725363E-4 0.0 1.8074089306886792E-4 0.0 28-29 0.0 2.6107017887725363E-4 0.0 5.422226792066037E-4 0.0 30-31 0.0 3.4139946468563935E-4 0.0 0.0016467503590719076 0.0 32-33 0.0 3.4139946468563935E-4 0.0 0.003775476432994129 0.0 34-35 0.0 4.4181107194612155E-4 0.0 0.00669745420427416 0.0 36-37 0.0 5.422226792066037E-4 0.0 0.011637705281489883 0.0 38-39 0.0 5.623050006587001E-4 0.0 0.018746847075532022 0.0 40-41 0.0 5.823873221107966E-4 0.0 0.025886112351752304 0.0 42-43 0.0 5.924284828368448E-4 0.0 0.032754266288369284 0.0 44-45 0.0 6.52675447193134E-4 0.0 0.04099805924445487 0.0 46-47 0.0 7.028812508233751E-4 0.0 0.04967362211176053 0.0 48-49 0.0 7.129224115494234E-4 0.0 0.05860021399721739 0.0 50-51 0.0 8.233751795359538E-4 0.0 0.06677371882822064 0.0 52-53 0.0 8.233751795359538E-4 0.0 0.07486689437341551 0.0 54-55 0.0 8.534986617140985E-4 0.0 0.08268895857900707 0.0 56-57 0.0 8.635398224401467E-4 0.0 0.08899480751496534 0.0 58-59 0.0 8.635398224401467E-4 0.0 0.09581275564795208 0.0 60-61 0.0 8.635398224401467E-4 0.0 0.10251020985222625 0.0 62-63 0.0 8.635398224401467E-4 0.0 0.10820354798389559 0.0 64-65 0.0 9.438691082485324E-4 0.0 0.11414791513371612 0.0 66-67 0.0 9.940749118787736E-4 0.0 0.12061442264129119 0.0 68-69 0.0 0.0010342395547829663 0.0 0.12612701987989164 0.0 70-71 0.0 0.0010543218762350628 0.0 0.1313685057788888 0.0 72-73 0.0 0.001064363036961111 0.0 0.13578661649835005 0.0 74-75 0.0 0.0010944865191392557 0.0 0.13926085810956274 0.0 76-77 0.0 0.0011748158049476414 0.0 0.14252423534552838 0.0 78-79 0.0 0.001204939287125786 0.0 0.14466300258017667 0.0 80-81 0.0 0.001204939287125786 0.0 0.14534580150954796 0.0 82-83 0.0 0.001204939287125786 0.0 0.14600851811746712 0.0 84-85 0.0 0.001204939287125786 0.0 0.14635995874287883 0.0 86-87 0.0 0.0012451039300299788 0.0 0.1465206173144956 0.0 88 0.0 0.0013053508943862682 0.0 0.14654069963594768 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6150 0.0 46.455093 1 GTATCAA 11015 0.0 38.203327 1 ATCAACG 12970 0.0 31.896894 3 TCAACGC 13085 0.0 31.712467 4 CAACGCA 13350 0.0 31.020302 5 TATCAAC 13685 0.0 30.505173 2 AACGCAG 13900 0.0 29.971636 6 ACGCAGA 15890 0.0 26.086493 7 CGCAGAG 16205 0.0 25.631035 8 GCAGAGT 19130 0.0 21.755749 9 GTACATG 15080 0.0 21.747156 1 TACATGG 14950 0.0 21.544542 2 GTGGTAT 3080 0.0 21.45824 1 ACATGGG 15000 0.0 21.026752 3 GAGTACT 11650 0.0 19.190369 12-13 TGGTATC 3030 0.0 19.189335 2 CATGGGG 10310 0.0 18.94743 4 CAGAGTA 18975 0.0 18.185856 10-11 AGAGTAC 17460 0.0 18.170753 10-11 TGCGCGA 315 0.0016688878 16.938797 94 >>END_MODULE