##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138873_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23004607 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.134128307429897 32.0 27.0 33.0 18.0 33.0 2 31.753515328473117 33.0 32.0 33.0 27.0 34.0 3 31.396104136880062 33.0 31.0 33.0 29.0 33.0 4 32.53181156278827 33.0 33.0 33.0 31.0 34.0 5 33.142238204721345 33.0 33.0 34.0 33.0 34.0 6 37.29148752682452 38.0 38.0 38.0 36.0 38.0 7 37.33722732146652 38.0 38.0 38.0 37.0 38.0 8 37.50008152714802 38.0 38.0 38.0 37.0 38.0 9 37.54073521012552 38.0 38.0 38.0 37.0 38.0 10-11 37.53517899697222 38.0 38.0 38.0 37.5 38.0 12-13 37.56588949769931 38.0 38.0 38.0 38.0 38.0 14-15 37.56135021128594 38.0 38.0 38.0 38.0 38.0 16-17 37.57417677250474 38.0 38.0 38.0 38.0 38.0 18-19 37.56489489257521 38.0 38.0 38.0 38.0 38.0 20-21 37.560601142219944 38.0 38.0 38.0 38.0 38.0 22-23 37.56658881969447 38.0 38.0 38.0 38.0 38.0 24-25 37.524120084149516 38.0 38.0 38.0 38.0 38.0 26-27 37.523640363332404 38.0 38.0 38.0 38.0 38.0 28-29 37.515037358584756 38.0 38.0 38.0 37.0 38.0 30-31 37.51052777161597 38.0 38.0 38.0 37.5 38.0 32-33 37.50618065308633 38.0 38.0 38.0 38.0 38.0 34-35 37.49176043690779 38.0 38.0 38.0 37.5 38.0 36-37 37.47043122893299 38.0 38.0 38.0 37.0 38.0 38-39 37.452650222575116 38.0 38.0 38.0 37.0 38.0 40-41 37.433558083362946 38.0 38.0 38.0 37.0 38.0 42-43 37.415305827894095 38.0 38.0 38.0 37.0 38.0 44-45 37.39009733310773 38.0 38.0 38.0 37.0 38.0 46-47 37.361530983007825 38.0 38.0 38.0 37.0 38.0 48-49 37.32195860576738 38.0 38.0 38.0 37.0 38.0 50-51 37.306612213646915 38.0 38.0 38.0 37.0 38.0 52-53 37.29905900076489 38.0 38.0 38.0 37.0 38.0 54-55 37.27871448815749 38.0 38.0 38.0 37.0 38.0 56-57 37.248989068475055 38.0 38.0 38.0 37.0 38.0 58-59 37.25493674335258 38.0 38.0 38.0 37.0 38.0 60-61 37.27244437783047 38.0 38.0 38.0 37.0 38.0 62-63 37.27970643647933 38.0 38.0 38.0 37.0 38.0 64-65 37.28839740422565 38.0 38.0 38.0 37.0 38.0 66-67 37.2969129154479 38.0 38.0 38.0 37.0 38.0 68-69 37.29942076866976 38.0 38.0 38.0 37.0 38.0 70-71 37.26990944886819 38.0 38.0 38.0 37.0 38.0 72-73 37.25246817718353 38.0 38.0 38.0 37.0 38.0 74-75 37.23923982187846 38.0 38.0 38.0 37.0 38.0 76-77 37.24327124626396 38.0 38.0 38.0 37.0 38.0 78-79 37.24858586904587 38.0 38.0 38.0 37.0 38.0 80-81 37.240681400912926 38.0 38.0 38.0 37.0 38.0 82-83 37.24254502730309 38.0 38.0 38.0 37.0 38.0 84-85 37.23837904547341 38.0 38.0 38.0 37.0 38.0 86-87 37.213460806746085 38.0 38.0 38.0 36.5 38.0 88-89 37.17660767725447 38.0 38.0 38.0 36.0 38.0 90-91 37.18566526475208 38.0 38.0 38.0 36.0 38.0 92-93 37.16870415648462 38.0 38.0 38.0 36.0 38.0 94-95 37.154915548732234 38.0 38.0 38.0 36.0 38.0 96-97 37.14897633846707 38.0 38.0 38.0 36.0 38.0 98-99 37.18546940185047 38.0 38.0 38.0 36.0 38.0 100 35.67099328784588 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 42.0 20 168.0 21 510.0 22 1403.0 23 3333.0 24 7461.0 25 14382.0 26 25299.0 27 41561.0 28 64662.0 29 96224.0 30 134351.0 31 179553.0 32 233987.0 33 307680.0 34 446951.0 35 818061.0 36 2648738.0 37 1.7980228E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.43439555389927 19.12480400121593 13.678321042389467 23.762479402495334 2 14.53709685194796 20.58661554183473 41.66077690438267 23.21551070183464 3 18.547619613758233 25.55767633848298 30.265055169166764 25.629648878592015 4 12.607174728088161 17.578192055182686 39.0761728726772 30.738460344051955 5 13.461638113468316 37.54455043188879 35.36894348007385 13.62486797456904 6 30.24251327865093 37.528487785658136 18.73461720431865 13.494381731372288 7 26.5847566860964 32.635688925573334 23.157903522268846 17.62165086606142 8 24.246370487718853 36.72341095518002 21.241815660742027 17.788402896359106 9 25.601856671740286 17.048864781638283 21.422949883295107 35.92632866332632 10-11 24.28499958399628 26.61806972361443 28.954621775243055 20.142308917146227 12-13 25.07292995702991 24.161695090031316 29.04087863791805 21.724496315020726 14-15 22.261214894912136 25.483895464938826 26.67924081467682 25.575648825472218 16-17 21.896577063889854 28.569399164263054 27.35405564633206 22.179968125515032 18-19 21.929661741232962 27.750361047245885 29.02179985078641 21.298177360734744 20-21 22.67307555962473 26.98732402760186 28.875770184550436 21.46383022822297 22-23 22.454881503964575 26.82047366419437 28.75886541548279 21.96577941635826 24-25 22.194629549457126 26.91656533521696 28.85420393845734 22.034601176868577 26-27 22.140355419414018 27.10926869320318 28.783700927444304 21.966674959938498 28-29 22.11562082187682 27.139133289067495 28.811901458456852 21.933344430598837 30-31 22.360281109278606 26.966145473122282 28.703856083778454 21.969717333820654 32-33 22.148309520288336 27.146718630146864 28.664843731274548 22.040128118290255 34-35 22.280365878855847 27.12857319320982 28.650861352361574 21.940199575572763 36-37 22.293600758636735 27.03159230299811 28.64379634467045 22.03101059369471 38-39 22.103539413080576 27.189009755147374 28.73879546119601 21.968655370576045 40-41 22.396316225689542 27.05380807362076 28.572597420059175 21.977278280630518 42-43 22.285630969731 27.11074607228162 28.443967185302704 22.159655772684676 44-45 22.35497152525874 27.17089369737598 28.35309579656223 22.121038980803046 46-47 22.360095784776103 27.167724878198673 28.17713627455663 22.295043062468594 48-49 22.27276229616986 27.262879504752956 28.214498487422212 22.249859711654974 50-51 22.25468052952188 27.40821400682944 28.104337867951607 22.232767595697073 52-53 22.471733080719655 27.286865227599836 27.946329448045343 22.295072243635165 54-55 22.456124239143612 27.205559180065713 27.97546929653277 22.36284728425791 56-57 22.413751555529068 27.30963244964924 27.981004991264253 22.295611003557433 58-59 22.382294670598128 27.30678258305278 28.033527855185618 22.277394891163475 60-61 22.421595122644753 27.2596023081413 28.057551160219536 22.261251408994408 62-63 22.39796923263474 27.32624251206792 28.01065609479766 22.26513216049968 64-65 22.38433700047308 27.27510965187831 27.978230896833665 22.36232245081494 66-67 22.44677539747916 27.354844774003674 27.828284167431654 22.37009566108551 68-69 22.385016927971392 27.306928960277578 27.910257980111915 22.39779613163912 70-71 22.443337747469666 27.097734508530536 27.914951502001117 22.543976241998685 72-73 22.489104636772172 27.146395294157454 27.819855459297187 22.544644609773183 74-75 22.34848926317804 27.2945853481296 27.77342341872614 22.583501969966218 76-77 22.514595638900026 27.25486774547614 27.669545747259615 22.560990868364218 78-79 22.50719435414246 27.28605905532353 27.62469964208034 22.582046948453666 80-81 22.50415240930503 27.28257416623291 27.609176433230694 22.60409699123137 82-83 22.57307531722307 27.286796434577305 27.62085388895243 22.519274359247195 84-85 22.67262359974474 27.27149628713236 27.559620073170976 22.49626003995192 86-87 22.510879051523904 27.27418622684815 27.64557414054078 22.56936058108717 88-89 22.613486531710926 27.29347109811777 27.58677613269957 22.50626623747173 90-91 22.651208773245926 27.304809644660228 27.569614325736108 22.47436725635774 92-93 22.68273848769021 27.30064929718078 27.55337681726052 22.463235397868488 94-95 22.584640889530363 27.399788453738736 27.536894971238564 22.478675685492338 96-97 22.692115429250244 27.44476465929473 27.63214943329085 22.23097047816418 98-99 23.742910638884307 29.391850148662336 27.81191546813299 19.053323744320362 100 22.652374903780434 30.22456645402461 21.736319536465277 25.386739105729678 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3599.0 1 3447.0 2 5248.5 3 7949.5 4 9899.0 5 12881.0 6 15815.0 7 20229.0 8 26713.5 9 30930.5 10 31307.0 11 31556.0 12 34715.5 13 40784.5 14 51271.5 15 62672.0 16 70561.0 17 74844.0 18 74057.0 19 69064.5 20 64577.0 21 63795.5 22 69269.0 23 82796.0 24 104914.5 25 137504.5 26 179724.5 27 225618.0 28 272260.5 29 322980.0 30 370727.0 31 416556.0 32 468937.0 33 520463.5 34 572661.0 35 623228.0 36 677035.5 37 726205.0 38 759210.0 39 789302.5 40 825921.0 41 859742.5 42 883414.5 43 907438.0 44 927472.0 45 946409.5 46 958552.0 47 961816.5 48 963887.5 49 953665.0 50 934431.5 51 908939.5 52 875839.5 53 837219.0 54 794848.0 55 748905.0 56 696896.5 57 637067.0 58 573276.5 59 504984.5 60 425623.5 61 344643.0 62 273571.0 63 213747.5 64 160974.5 65 118288.0 66 87992.5 67 67046.5 68 50755.0 69 36999.5 70 26901.5 71 19507.5 72 13904.0 73 9557.5 74 6137.5 75 3914.0 76 2523.5 77 1522.5 78 981.0 79 633.0 80 406.5 81 263.5 82 176.5 83 121.5 84 75.0 85 45.5 86 36.0 87 32.0 88 23.0 89 13.5 90 10.0 91 6.5 92 3.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.006359595710546152 6 4.781650910185077E-5 7 1.3040866118686574E-5 8 4.346955372895525E-6 9 8.69391074579105E-6 10-11 2.1734776864477626E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.17320835832414E-4 26-27 0.0 28-29 6.762690199030974E-4 30-31 0.0024834050430142733 32-33 1.810180858440978E-4 34-35 4.1546611537082934E-5 36-37 3.3804879203093435E-4 38-39 6.15884917024739E-4 40-41 6.240800510368667E-4 42-43 1.4750125498984456E-4 44-45 0.0 46-47 0.0014959904618009052 48-49 5.951692583540933E-5 50-51 0.0020673457728328016 52-53 0.0015595202283602448 54-55 0.0028519666347065326 56-57 0.0026126895238372163 58-59 0.0038335579093902537 60-61 0.00287459589792286 62-63 0.0030289399486768866 64-65 0.004371976974319661 66-67 0.0016937894133779476 68-69 1.0935129259316724E-4 70-71 7.527318331872992E-4 72-73 0.006987599328572495 74-75 0.006189946086131848 76-77 0.004854959002683074 78-79 0.0028002187452738168 80-81 3.946217787024204E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0022491540020644608 90-91 2.626667079928954E-4 92-93 0.0 94-95 1.1863343435346882E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 123.0 20-21 477.0 22-23 1104.0 24-25 1630.0 26-27 4824.0 28-29 13569.0 30-31 44339.0 32-33 55619.0 34-35 77044.0 36-37 121370.0 38-39 137205.0 40-41 137976.0 42-43 155117.0 44-45 181771.0 46-47 185398.0 48-49 175649.0 50-51 160043.0 52-53 156337.0 54-55 168899.0 56-57 170473.0 58-59 174199.0 60-61 171125.0 62-63 171788.0 64-65 181456.0 66-67 190456.0 68-69 191645.0 70-71 188123.0 72-73 178563.0 74-75 179770.0 76-77 186250.0 78-79 189095.0 80-81 188638.0 82-83 179904.0 84-85 179236.0 86-87 184899.0 88-89 188753.0 90-91 190267.0 92-93 188901.0 94-95 221661.0 96-97 705134.0 98-99 1523536.0 100-101 1.5302241E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.09590109133731 #Duplication Level Percentage of deduplicated Percentage of total 1 87.52038817011872 70.10024354349277 2 7.997714104234525 12.811682356991236 3 2.245882110190631 5.3965785408189815 4 0.9087720228816952 2.911556562372271 5 0.48481967525125624 1.9416034378029448 6 0.25499061603436707 1.22542218966647 7 0.16079278458433643 0.9015190079187403 8 0.10870663576828643 0.6965564757174959 9 0.07206647740025199 0.5195006501266509 >10 0.2393970552658505 2.913455800142657 >50 0.004683752866832046 0.25178820375534383 >100 0.0016911671660947516 0.213552854503288 >500 3.589421041916678E-5 0.015974239336890163 >1k 5.953402662219831E-5 0.10056613735433056 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.346955372895525E-6 2 0.0 2.1734776864477623E-5 0.0 8.69391074579105E-6 4.346955372895525E-6 3 0.0 2.608173223737315E-5 0.0 1.3040866118686574E-5 4.346955372895525E-6 4 0.0 7.389824133922392E-5 0.0 1.73878214915821E-5 4.346955372895525E-6 5 0.0 8.259215208501498E-5 0.0 2.608173223737315E-5 4.346955372895525E-6 6 5.651041984764182E-5 8.693910745791049E-5 0.0 2.608173223737315E-5 1.3040866118686574E-5 7 5.651041984764182E-5 8.693910745791049E-5 0.0 3.0428687610268675E-5 1.3040866118686574E-5 8 5.651041984764182E-5 1.043269289494926E-4 0.0 3.0428687610268675E-5 1.3040866118686574E-5 9 5.651041984764182E-5 2.4777645625504493E-4 0.0 5.21634644747463E-5 1.73878214915821E-5 10-11 5.651041984764182E-5 2.4777645625504493E-4 0.0 7.389824133922392E-5 1.73878214915821E-5 12-13 5.8683897534089585E-5 2.499499339414927E-4 0.0 8.476562977146273E-5 1.73878214915821E-5 14-15 6.085737522053735E-5 3.93399461247045E-4 0.0 9.780649589014932E-5 3.47756429831642E-5 16-17 9.128606283080602E-5 4.042668496792838E-4 0.0 1.1084736200883588E-4 4.3469553728955246E-5 18-19 9.128606283080602E-5 4.39042492662448E-4 0.0 1.1736779506817917E-4 4.7816509101850775E-5 20-21 9.128606283080602E-5 4.868590017642988E-4 0.0 1.217147504410747E-4 4.7816509101850775E-5 22-23 9.997997357659707E-5 5.498898546712839E-4 0.0 1.6083734879713442E-4 5.433694216119406E-5 24-25 1.043269289494926E-4 6.346554844427466E-4 0.0 1.9126603640740307E-4 6.085737522053735E-5 26-27 1.043269289494926E-4 6.563902613072242E-4 0.0 2.303886347634628E-4 6.085737522053735E-5 28-29 1.043269289494926E-4 6.563902613072242E-4 0.0 5.12940734001672E-4 6.303085290698511E-5 30-31 1.043269289494926E-4 7.976663109263288E-4 0.0 0.0017366086714717623 6.520433059343287E-5 32-33 1.0650040663594036E-4 8.020132662992243E-4 0.0 0.004020933719928361 6.520433059343287E-5 34-35 1.1736779506817917E-4 9.23728016740299E-4 0.0 0.007055108570209437 7.389824133922392E-5 36-37 1.217147504410747E-4 0.0010584836333000602 0.0 0.011593329979512365 7.389824133922392E-5 38-39 1.217147504410747E-4 0.001088912320910329 0.0 0.02189561421327476 7.607171902567168E-5 40-41 1.217147504410747E-4 0.0012301883705294334 0.0 0.032652155283504736 8.259215208501498E-5 42-43 1.217147504410747E-4 0.0012562701027668067 0.0 0.040111530703393454 8.476562977146273E-5 44-45 1.217147504410747E-4 0.0013584235540298516 0.0 0.04953355647414451 8.911258514435826E-5 46-47 1.2388822812752246E-4 0.0014431891838013143 0.0 0.059548941653295794 9.563301820370154E-5 48-49 1.2606170581397022E-4 0.0014518830945471053 0.0 0.06888620179427538 1.1302083969528364E-4 50-51 1.4344952730555233E-4 0.001610546965657792 0.0 0.07860164705269687 1.1302083969528364E-4 52-53 1.5214343805134336E-4 0.0016214143540900308 0.0 0.10001909617495314 1.151943173817314E-4 54-55 1.5214343805134336E-4 0.001636628697895165 0.0 0.1263703396454458 1.1736779506817917E-4 56-57 1.5214343805134336E-4 0.0016779247739376725 0.0 0.16619279781654173 1.1954127275462694E-4 58-59 1.5214343805134336E-4 0.0016800982516241203 0.0 0.1961541877242241 1.2606170581397022E-4 60-61 1.6301082648358217E-4 0.001721394327666628 0.0 0.20921026818671581 1.3040866118686574E-4 62-63 1.8691908103450757E-4 0.001773557792141374 0.0 0.22037759653968442 1.3475561655976127E-4 64-65 1.8691908103450757E-4 0.002012640337650628 0.0 0.22570696382685435 1.3475561655976127E-4 66-67 1.8909255872095532E-4 0.002038722069888001 0.0 0.23109284153387188 1.3910257193265678E-4 68-69 1.912660364074031E-4 0.0020930590120491954 0.0 0.23627223886067691 1.434495273055523E-4 70-71 2.086538578989852E-4 0.002132181610405255 0.0 0.24099303239564146 1.434495273055523E-4 72-73 2.434295008821494E-4 0.0021495694318968374 0.0 0.24493572091885768 1.6953125954292545E-4 74-75 2.434295008821494E-4 0.0021952124633122403 0.0 0.24779384407653648 1.6953125954292545E-4 76-77 2.456029785685972E-4 0.0022908454815159414 0.0 0.25065414071190173 1.6953125954292545E-4 78-79 2.4777645625504493E-4 0.0023299680798720013 0.0 0.25248855587926367 1.6953125954292545E-4 80-81 2.4777645625504493E-4 0.002334315035244897 0.0 0.2531536400513167 1.717047372293732E-4 82-83 2.4777645625504493E-4 0.0023451824236771354 0.0 0.25364919296382676 1.8691908103450757E-4 84-85 2.4777645625504493E-4 0.0023625702451687174 0.0 0.2538817550762767 1.8691908103450757E-4 86-87 2.4777645625504493E-4 0.002416907187329912 0.0 0.25395130636224306 1.8909255872095532E-4 88 2.4777645625504493E-4 0.0025516628038896733 0.0 0.2539578267953024 1.956129917802986E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25560 0.0 48.04521 1 GTATCAA 47290 0.0 38.739574 1 TCAACGC 54815 0.0 32.77328 4 ATCAACG 55235 0.0 32.454334 3 CAACGCA 56655 0.0 31.693785 5 TATCAAC 58340 0.0 31.02051 2 AACGCAG 58435 0.0 30.682268 6 ACGCAGA 67645 0.0 26.517475 7 CGCAGAG 68900 0.0 26.0034 8 GCAGAGT 82835 0.0 21.732294 9 GTACATG 61290 0.0 20.239004 1 TACATGG 60585 0.0 19.902246 2 GTGGTAT 13105 0.0 19.891186 1 GAGTACT 49860 0.0 19.584764 12-13 ACATGGG 60630 0.0 19.35799 3 CAGAGTA 80690 0.0 18.604935 10-11 AGAGTAC 73750 0.0 18.50148 10-11 TGGTATC 13175 0.0 17.966143 2 GTACTTT 56230 0.0 17.343521 14-15 CATGGGG 47165 0.0 17.20675 4 >>END_MODULE