##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138872_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8120883 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.780906953098572 32.0 25.0 33.0 18.0 33.0 2 31.635961015569364 33.0 32.0 33.0 27.0 33.0 3 31.323440936164207 33.0 31.0 33.0 29.0 33.0 4 32.532542828162896 33.0 33.0 33.0 31.0 34.0 5 33.14575619424637 33.0 33.0 34.0 33.0 34.0 6 37.2966826390677 38.0 38.0 38.0 36.0 38.0 7 37.3399950473366 38.0 38.0 38.0 37.0 38.0 8 37.49621266554388 38.0 38.0 38.0 37.0 38.0 9 37.537155380763394 38.0 38.0 38.0 37.0 38.0 10-11 37.53138020828523 38.0 38.0 38.0 37.5 38.0 12-13 37.561163053328066 38.0 38.0 38.0 37.5 38.0 14-15 37.55566814593931 38.0 38.0 38.0 38.0 38.0 16-17 37.567013032942356 38.0 38.0 38.0 38.0 38.0 18-19 37.56063847983033 38.0 38.0 38.0 38.0 38.0 20-21 37.5561197431266 38.0 38.0 38.0 38.0 38.0 22-23 37.56059509460803 38.0 38.0 38.0 38.0 38.0 24-25 37.51797877060342 38.0 38.0 38.0 38.0 38.0 26-27 37.51791216792369 38.0 38.0 38.0 37.0 38.0 28-29 37.51098069712326 38.0 38.0 38.0 37.0 38.0 30-31 37.50363415390949 38.0 38.0 38.0 37.5 38.0 32-33 37.49793536194373 38.0 38.0 38.0 37.0 38.0 34-35 37.4816842745135 38.0 38.0 38.0 37.0 38.0 36-37 37.457652426139184 38.0 38.0 38.0 37.0 38.0 38-39 37.435625212029365 38.0 38.0 38.0 37.0 38.0 40-41 37.418466828751406 38.0 38.0 38.0 37.0 38.0 42-43 37.39781620871561 38.0 38.0 38.0 37.0 38.0 44-45 37.367566651297906 38.0 38.0 38.0 37.0 38.0 46-47 37.33089092145819 38.0 38.0 38.0 37.0 38.0 48-49 37.28819125901301 38.0 38.0 38.0 37.0 38.0 50-51 37.27099549495304 38.0 38.0 38.0 37.0 38.0 52-53 37.26040677440905 38.0 38.0 38.0 37.0 38.0 54-55 37.240149745319144 38.0 38.0 38.0 37.0 38.0 56-57 37.208799933420224 38.0 38.0 38.0 37.0 38.0 58-59 37.21330089989422 38.0 38.0 38.0 37.0 38.0 60-61 37.23039951195183 38.0 38.0 38.0 37.0 38.0 62-63 37.2376725123262 38.0 38.0 38.0 37.0 38.0 64-65 37.24662708531042 38.0 38.0 38.0 37.0 38.0 66-67 37.2545821950939 38.0 38.0 38.0 37.0 38.0 68-69 37.255207147958174 38.0 38.0 38.0 37.0 38.0 70-71 37.223034917070734 38.0 38.0 38.0 37.0 38.0 72-73 37.206099964047496 38.0 38.0 38.0 37.0 38.0 74-75 37.192541563518105 38.0 38.0 38.0 36.5 38.0 76-77 37.196192268164324 38.0 38.0 38.0 36.5 38.0 78-79 37.201720525403225 38.0 38.0 38.0 36.5 38.0 80-81 37.19382881206543 38.0 38.0 38.0 36.5 38.0 82-83 37.194887308707976 38.0 38.0 38.0 36.0 38.0 84-85 37.19062993514289 38.0 38.0 38.0 36.0 38.0 86-87 37.165478355726066 38.0 38.0 38.0 36.0 38.0 88-89 37.12567670956427 38.0 38.0 38.0 36.0 38.0 90-91 37.13330332233799 38.0 38.0 38.0 36.0 38.0 92-93 37.115912839785736 38.0 38.0 38.0 36.0 38.0 94-95 37.10230156010981 38.0 38.0 38.0 36.0 38.0 96-97 37.096375154637144 38.0 38.0 38.0 36.0 38.0 98-99 37.134273402484624 38.0 38.0 38.0 36.0 38.0 100 35.56416753230868 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 21.0 20 73.0 21 206.0 22 538.0 23 1297.0 24 2641.0 25 5313.0 26 9392.0 27 15406.0 28 24078.0 29 35883.0 30 50394.0 31 66908.0 32 86966.0 33 114763.0 34 165485.0 35 300641.0 36 965161.0 37 6275712.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.38446939821692 19.2614276058404 14.02558071579162 23.328522280151063 2 14.162277673499299 20.637546434297846 42.49039174680881 22.70978414539404 3 18.51790008549563 25.951833070369318 30.335962234648623 25.19430460948643 4 12.297837562737945 17.916352199631493 39.62441030119508 30.161399936435483 5 13.160769230958685 37.83058318890324 35.580281418872076 13.428366161266004 6 29.560093295296408 37.99043478164499 19.088729412486156 13.360742510572438 7 26.22462360312296 32.93826545709377 23.302736906811734 17.534374032971538 8 23.908102111556097 37.27507218119015 21.3578498791326 17.458975828121154 9 25.447355909449747 17.407836069058007 21.551080098063228 35.593727923429014 10-11 24.004472175153914 27.011947780785594 29.04768762451313 19.935892419547365 12-13 24.89141267027243 24.46019724702351 29.276699344147673 21.37169073855639 14-15 22.023300914444896 25.81032752226574 27.006847654374532 25.15952390891483 16-17 21.45095551801448 28.99408229376042 27.69556586395839 21.859396324266708 18-19 21.506805356018553 28.064318867788145 29.54391166576344 20.884964110429863 20-21 22.30654771341896 27.220612942239608 29.416066667967854 21.056772676373573 22-23 22.01860581559654 27.153445919232688 29.292322276433957 21.53562598873681 24-25 21.8155838573991 27.232082985170575 29.395887071498112 21.556446085932212 26-27 21.740113058367015 27.42093390280449 29.317305851973792 21.521647186854707 28-29 21.60504941870368 27.540566863938203 29.35215171516465 21.502232002193473 30-31 21.992782772374316 27.271695336955226 29.291282206597735 21.444239684072723 32-33 21.73779176561712 27.451114120036863 29.23728797853441 21.57380613581161 34-35 21.839433610727895 27.419341253772544 29.2925968030056 21.448628332493957 36-37 21.7683640642258 27.438336807000844 29.27689406880597 21.516405059967386 38-39 21.64568260446975 27.4954511786932 29.354139255499685 21.50472696133736 40-41 21.88268647298974 27.358883941178924 29.2017918405567 21.55663774527464 42-43 21.848545716228827 27.39828237936325 29.058623689246684 21.694548215161245 44-45 21.83155722232267 27.57874385203369 28.954795079257018 21.634903846386624 46-47 21.892106520012774 27.493141013668133 28.745459992051053 21.869292474268043 48-49 21.79476652807579 27.618283583249326 28.780385177648775 21.80656471102611 50-51 21.78617869317763 27.74216548851144 28.672679933023893 21.79897588528704 52-53 21.99150219208164 27.673727711295363 28.55656751023876 21.77820258638424 54-55 21.912799692151978 27.578965148284233 28.596216471589912 21.912018687973873 56-57 21.939249801604937 27.677133066157094 28.52598586892369 21.85763126331427 58-59 21.887528662144703 27.739693758786487 28.59741755403551 21.775360025033297 60-61 21.960956958779107 27.759709760868706 28.57481998435362 21.704513295998563 62-63 21.89051532695689 27.79293555321199 28.574011893289956 21.742537226541163 64-65 21.86599438262542 27.775176695199637 28.551880376177813 21.806948545997134 66-67 21.95412244148618 27.802501206622605 28.37544471099349 21.867931640897726 68-69 21.887250390116993 27.804142173915693 28.438840397600153 21.869767038367165 70-71 21.9352383485404 27.576902427447834 28.461534108552904 22.02632511545886 72-73 21.97076986914003 27.59111383453352 28.416689342014955 22.021426954311494 74-75 21.87295034759944 27.716461842797475 28.362243944950873 22.04834386465222 76-77 21.99317579461486 27.677324803355173 28.241873628297004 22.087625773732963 78-79 21.973576304716342 27.74276786543286 28.190946570145798 22.092709259705 80-81 22.022690314244432 27.730733134338614 28.130028113754534 22.11654843766242 82-83 22.03404854312406 27.725594599121354 28.229028967861264 22.011327889893323 84-85 22.16262978518592 27.699286386516015 28.154703964245343 21.983379864052722 86-87 21.96007824416966 27.783574995106697 28.201142065342893 22.055204695380752 88-89 22.099004652127647 27.793470118435256 28.105888725409223 22.001636504027875 90-91 22.14797703130101 27.777647150939416 28.12777881115247 21.946597006607107 92-93 22.168784962223086 27.74628046780795 28.0944369581071 21.99049761186187 94-95 22.057851359450005 27.889809860979298 28.061632486807593 21.990706292763104 96-97 22.140348838321405 27.953849355063255 28.16340728299394 21.7423945236214 98-99 23.128886749444785 29.855460161416552 28.42119508689138 18.594458002247283 100 22.054757258157267 30.774440770917348 22.392896197808177 24.777905773117208 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1435.0 1 1373.0 2 2079.5 3 3173.0 4 3932.5 5 5038.5 6 6224.0 7 8244.0 8 11264.0 9 13249.0 10 13310.5 11 13183.5 12 14183.5 13 16355.0 14 20537.5 15 25046.0 16 28089.5 17 29747.0 18 29416.5 19 27719.5 20 26038.0 21 25524.5 22 27493.0 23 32633.5 24 41366.0 25 53370.0 26 68816.0 27 87096.5 28 105246.5 29 124065.0 30 142963.0 31 161359.5 32 180520.5 33 199234.5 34 218610.5 35 236758.5 36 255148.0 37 272393.0 38 283470.5 39 293053.0 40 305329.0 41 315294.0 42 320935.0 43 328307.0 44 333499.5 45 336860.0 46 338268.0 47 336005.5 48 332404.0 49 325496.5 50 316844.0 51 305122.0 52 289675.5 53 273579.0 54 257127.5 55 238518.0 56 219484.0 57 198730.5 58 176785.0 59 155918.5 60 132032.0 61 106472.5 62 83726.0 63 64648.5 64 48935.5 65 36139.5 66 26474.5 67 20072.5 68 15222.5 69 11011.0 70 7994.0 71 5730.5 72 4054.5 73 2829.5 74 1844.5 75 1174.5 76 728.0 77 419.0 78 246.5 79 147.0 80 98.0 81 71.0 82 47.0 83 31.5 84 23.5 85 16.0 86 8.0 87 4.5 88 3.5 89 2.5 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.005676722592851048 6 2.4627863743388492E-5 7 0.0 8 0.0 9 0.0 10-11 3.0784829679235615E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.773348965401734E-4 26-27 1.847439095321391E-5 28-29 8.131201619735363E-4 30-31 0.002632740202245006 32-33 1.5444092724108767E-4 34-35 7.43175420117065E-5 36-37 2.6730011406255334E-4 38-39 5.375424658548024E-4 40-41 6.602678952093226E-4 42-43 1.8346558777091777E-4 44-45 0.0 46-47 0.0015671565101222896 48-49 4.532779539913811E-5 50-51 0.0020360237865004573 52-53 0.0015050494408741326 54-55 0.002620928377837271 56-57 0.002313805349624657 58-59 0.003716414083798081 60-61 0.0028251297527218805 62-63 0.002868107417178447 64-65 0.004385047058370001 66-67 0.0017497544268266238 68-69 7.708085010367375E-5 70-71 8.558984596020525E-4 72-73 0.006612908339948623 74-75 0.006021856023905328 76-77 0.004636169344006018 78-79 0.002706160475316186 80-81 7.403811348813765E-6 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.002158909408089272 90-91 2.7159961932597356E-4 92-93 0.0 94-95 5.543939681936261E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 63.0 20-21 206.0 22-23 447.0 24-25 583.0 26-27 1727.0 28-29 4962.0 30-31 14950.0 32-33 18857.0 34-35 26039.0 36-37 41596.0 38-39 48447.0 40-41 47390.0 42-43 52337.0 44-45 62082.0 46-47 64231.0 48-49 60596.0 50-51 55778.0 52-53 52301.0 54-55 56140.0 56-57 57397.0 58-59 59329.0 60-61 59215.0 62-63 57940.0 64-65 61118.0 66-67 64846.0 68-69 66953.0 70-71 68401.0 72-73 60878.0 74-75 60199.0 76-77 62032.0 78-79 64222.0 80-81 64296.0 82-83 60843.0 84-85 59146.0 86-87 61562.0 88-89 64086.0 90-91 64727.0 92-93 64379.0 94-95 75244.0 96-97 241263.0 98-99 536445.0 100-101 5477630.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.21483516924316 #Duplication Level Percentage of deduplicated Percentage of total 1 88.92866069280234 74.89112502065902 2 7.681999769710584 12.938766887526818 3 1.919092038564963 4.848480591070656 4 0.6970318604111265 2.3480169292893573 5 0.32303239781241894 1.3602060068049122 6 0.1615230028054609 0.8161579834381852 7 0.08982601303328008 0.529527801705558 8 0.05286648440493805 0.35617138161113776 9 0.035132846708994005 0.2662836205161795 >10 0.10836867716388467 1.374473870963645 >50 0.0017084889737472738 0.10050660036857176 >100 6.86804815957417E-4 0.109281611408551 >500 2.364094290002593E-5 0.013816971680423942 >1k 4.7281849485873385E-5 0.047184722956983435 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.4627863743388495E-5 0.0 0.0 0.0 3 0.0 2.4627863743388495E-5 0.0 0.0 0.0 4 0.0 6.156965935847124E-5 0.0 0.0 0.0 5 2.4627863743388495E-5 6.156965935847124E-5 0.0 0.0 0.0 6 2.4627863743388495E-5 6.156965935847124E-5 0.0 0.0 0.0 7 2.4627863743388495E-5 6.156965935847124E-5 0.0 0.0 0.0 8 2.4627863743388495E-5 7.388359123016549E-5 0.0 1.2313931871694248E-5 0.0 9 2.4627863743388495E-5 2.2165077369049646E-4 0.0 2.4627863743388495E-5 0.0 10-11 4.925572748677699E-5 2.339647055621907E-4 0.0 2.4627863743388495E-5 0.0 12-13 6.156965935847124E-5 2.339647055621907E-4 0.0 2.4627863743388495E-5 0.0 14-15 6.772662529431837E-5 3.2631919459989755E-4 0.0 4.309876155092987E-5 2.4627863743388495E-5 16-17 8.619752310185974E-5 3.3863312647159185E-4 0.0 5.541269342262412E-5 4.925572748677699E-5 18-19 9.851145497355398E-5 3.6326099021498034E-4 0.0 7.388359123016549E-5 6.156965935847124E-5 20-21 9.851145497355398E-5 4.186736836376044E-4 0.0 8.619752310185974E-5 6.772662529431837E-5 22-23 1.3545325058863673E-4 4.371445814451458E-4 0.0 8.619752310185974E-5 8.004055716601261E-5 24-25 1.8470897807541372E-4 4.8024334299607565E-4 0.0 1.046684209094011E-4 9.235448903770686E-5 26-27 1.9702290994710796E-4 4.8024334299607565E-4 0.0 1.4776718246033098E-4 9.851145497355398E-5 28-29 1.9702290994710796E-4 4.8024334299607565E-4 0.0 3.078482967923562E-4 9.851145497355398E-5 30-31 2.093368418188022E-4 5.294990704828526E-4 0.0 0.0012498640849769663 1.046684209094011E-4 32-33 2.093368418188022E-4 5.294990704828526E-4 0.0 0.003152366559153728 1.3545325058863673E-4 34-35 2.1549380775464933E-4 5.787547979696296E-4 0.0 0.005504327546647329 1.3545325058863673E-4 36-37 2.2165077369049646E-4 6.403244573281009E-4 0.0 0.009691064383023373 1.3545325058863673E-4 38-39 2.2165077369049646E-4 6.526383891997951E-4 0.0 0.019339030004495817 1.3545325058863673E-4 40-41 2.2165077369049646E-4 7.142080485582664E-4 0.0 0.02952265166238696 1.3545325058863673E-4 42-43 2.2165077369049646E-4 7.511498441733491E-4 0.0 0.03579044298507933 1.3545325058863673E-4 44-45 2.2165077369049646E-4 8.373473672752088E-4 0.0 0.04351743523456747 1.3545325058863673E-4 46-47 2.2165077369049646E-4 8.866030947619858E-4 0.0 0.05170619992924415 1.4161021652448386E-4 48-49 2.2165077369049646E-4 8.92760060697833E-4 0.0 0.059759511373332186 1.7239504620371947E-4 50-51 2.2165077369049646E-4 9.851145497355397E-4 0.0 0.0687117398440539 1.7239504620371947E-4 52-53 2.4012167149803783E-4 9.97428481607234E-4 0.0 0.08951612774128134 1.785520121395666E-4 54-55 2.46278637433885E-4 0.0010035854475430811 0.0 0.11502443761349597 1.8470897807541372E-4 56-57 2.46278637433885E-4 0.0010097424134789283 0.0 0.15458294375131376 1.8470897807541372E-4 58-59 2.46278637433885E-4 0.0010282133112864697 0.0 0.18317589355738778 1.9702290994710796E-4 60-61 2.46278637433885E-4 0.0010589981409657053 0.0 0.19397521180886365 1.9702290994710796E-4 62-63 2.46278637433885E-4 0.0010836260047090939 0.0 0.2030752074620457 1.9702290994710796E-4 64-65 2.46278637433885E-4 0.0012498640849769663 0.0 0.2075205368677273 1.9702290994710796E-4 66-67 2.46278637433885E-4 0.0012560210509128132 0.0 0.21198433717121648 1.9702290994710796E-4 68-69 2.46278637433885E-4 0.0012744919487203547 0.0 0.21658974769123013 1.9702290994710796E-4 70-71 2.46278637433885E-4 0.0012929628465278959 0.0 0.22092425171006652 1.9702290994710796E-4 72-73 2.46278637433885E-4 0.0013175907102712845 0.0 0.2244645071231786 2.2165077369049646E-4 74-75 2.46278637433885E-4 0.0013483755399505202 0.0 0.22726592662398903 2.2165077369049646E-4 76-77 2.46278637433885E-4 0.0014099451993089913 0.0 0.22995652073795425 2.3396470556219073E-4 78-79 2.585925693055792E-4 0.001440730028988227 0.0 0.23156964581314618 2.46278637433885E-4 80-81 2.585925693055792E-4 0.001440730028988227 0.0 0.2321053018495649 2.46278637433885E-4 82-83 2.7706346711312056E-4 0.0014468869949240742 0.0 0.23253013249913834 2.46278637433885E-4 84-85 2.832204330489677E-4 0.0014530439608599214 0.0 0.23277641113657221 2.46278637433885E-4 86-87 2.832204330489677E-4 0.0015022996883466983 0.0 0.2328133529321873 2.46278637433885E-4 88 2.832204330489677E-4 0.0016254390070636407 0.0 0.23281950989812314 2.7090650117727347E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11140 0.0 50.487915 1 GTATCAA 19835 0.0 37.27368 1 TCAACGC 23135 0.0 31.214603 4 ATCAACG 23135 0.0 31.177486 3 TATCAAC 24140 0.0 30.270779 2 CAACGCA 23865 0.0 30.223806 5 AACGCAG 24480 0.0 29.462875 6 ACGCAGA 28055 0.0 25.769684 7 CGCAGAG 28520 0.0 25.364576 8 GTGGTAT 4955 0.0 25.041222 1 TGGTATC 5060 0.0 22.739744 2 GCAGAGT 33440 0.0 21.722576 9 TACATGG 24445 0.0 20.162909 2 GTACATG 25045 0.0 20.07415 1 GAGTACT 20295 0.0 20.000908 12-13 CAGAGTA 32700 0.0 19.581806 10-11 ACATGGG 24630 0.0 19.24447 3 AGAGTAC 30385 0.0 18.134846 10-11 GTACTTT 22415 0.0 18.11892 14-15 CATGGGG 18420 0.0 17.434652 4 >>END_MODULE