##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138871_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6673129 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.082714270921482 32.0 25.0 33.0 18.0 34.0 2 31.72623322582255 33.0 32.0 33.0 27.0 34.0 3 31.387129336177974 33.0 31.0 33.0 29.0 33.0 4 32.542814173081325 33.0 33.0 33.0 31.0 34.0 5 33.14327236892918 33.0 33.0 34.0 33.0 34.0 6 37.28750530673092 38.0 38.0 38.0 36.0 38.0 7 37.3407879571937 38.0 38.0 38.0 37.0 38.0 8 37.49635710623907 38.0 38.0 38.0 37.0 38.0 9 37.53881335127794 38.0 38.0 38.0 37.0 38.0 10-11 37.53405763623032 38.0 38.0 38.0 37.5 38.0 12-13 37.56263291178696 38.0 38.0 38.0 38.0 38.0 14-15 37.55779934720279 38.0 38.0 38.0 38.0 38.0 16-17 37.56967263782852 38.0 38.0 38.0 38.0 38.0 18-19 37.56212355553144 38.0 38.0 38.0 38.0 38.0 20-21 37.557342899571324 38.0 38.0 38.0 38.0 38.0 22-23 37.56166085012803 38.0 38.0 38.0 38.0 38.0 24-25 37.51836613373787 38.0 38.0 38.0 38.0 38.0 26-27 37.51899331190667 38.0 38.0 38.0 38.0 38.0 28-29 37.51145122581641 38.0 38.0 38.0 37.5 38.0 30-31 37.50603065574971 38.0 38.0 38.0 37.5 38.0 32-33 37.502507093947536 38.0 38.0 38.0 38.0 38.0 34-35 37.4851802845524 38.0 38.0 38.0 37.5 38.0 36-37 37.46346741423608 38.0 38.0 38.0 37.0 38.0 38-39 37.44260330031436 38.0 38.0 38.0 37.0 38.0 40-41 37.422203550330565 38.0 38.0 38.0 37.0 38.0 42-43 37.400458750554336 38.0 38.0 38.0 37.0 38.0 44-45 37.36974909355303 38.0 38.0 38.0 37.0 38.0 46-47 37.33142685234981 38.0 38.0 38.0 37.0 38.0 48-49 37.28523787258081 38.0 38.0 38.0 37.0 38.0 50-51 37.26711796636562 38.0 38.0 38.0 37.0 38.0 52-53 37.25748139118781 38.0 38.0 38.0 37.0 38.0 54-55 37.23659484329629 38.0 38.0 38.0 37.0 38.0 56-57 37.20620767604797 38.0 38.0 38.0 37.0 38.0 58-59 37.210129562390534 38.0 38.0 38.0 37.0 38.0 60-61 37.22881758174977 38.0 38.0 38.0 37.0 38.0 62-63 37.237865347197086 38.0 38.0 38.0 37.0 38.0 64-65 37.245709788372196 38.0 38.0 38.0 37.0 38.0 66-67 37.252988488873825 38.0 38.0 38.0 37.0 38.0 68-69 37.254197786409414 38.0 38.0 38.0 37.0 38.0 70-71 37.225297504472564 38.0 38.0 38.0 37.0 38.0 72-73 37.20551534920797 38.0 38.0 38.0 37.0 38.0 74-75 37.191677704357794 38.0 38.0 38.0 36.5 38.0 76-77 37.191717182746586 38.0 38.0 38.0 36.0 38.0 78-79 37.196142941642734 38.0 38.0 38.0 36.5 38.0 80-81 37.1852594843814 38.0 38.0 38.0 36.0 38.0 82-83 37.18881279376309 38.0 38.0 38.0 36.0 38.0 84-85 37.182720945225 38.0 38.0 38.0 36.0 38.0 86-87 37.155397117058655 38.0 38.0 38.0 36.0 38.0 88-89 37.112400582725336 38.0 38.0 38.0 36.0 38.0 90-91 37.11883400642291 38.0 38.0 38.0 36.0 38.0 92-93 37.100563356448816 38.0 38.0 38.0 36.0 38.0 94-95 37.083397191577255 38.0 38.0 38.0 36.0 38.0 96-97 37.07089275689924 38.0 38.0 38.0 36.0 38.0 98-99 37.105509236174264 38.0 38.0 38.0 36.0 38.0 100 35.51111002845928 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 16.0 20 46.0 21 169.0 22 442.0 23 1061.0 24 2329.0 25 4363.0 26 7602.0 27 12560.0 28 19823.0 29 29558.0 30 41283.0 31 56094.0 32 72050.0 33 95033.0 34 136489.0 35 244780.0 36 778851.0 37 5170577.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.45537153560197 19.124176979045362 14.048881716508102 23.371569768844573 2 14.33074349379429 20.55124365196597 42.22973960191688 22.88827325232286 3 18.602967213731368 25.74308094448646 30.247414668591 25.406537173191168 4 12.434616504491371 17.73736128883467 39.31034451754192 30.51767768913204 5 13.253096911188983 37.79570689332964 35.35552416062051 13.595672034860867 6 29.81111994921719 37.778257979321225 18.91416973519449 13.496452336267092 7 26.52512786730183 32.863938341368794 23.069192877883822 17.54174091344555 8 24.125698753912893 37.01924539447686 21.178175935157256 17.676879916452986 9 25.644615238910447 17.222193250301807 21.387765977214883 35.74542553357286 10-11 24.16996765460159 26.871549079266195 28.883311628121653 20.075171638010566 12-13 25.0571733290335 24.44675503800391 29.078652608094345 21.417419024868245 14-15 22.16080342519978 25.74558351861623 26.90957270569773 25.18404035048626 16-17 21.55889688330617 28.87825935929007 27.59915176223927 21.963691995164485 18-19 21.593063763640714 27.974118288437104 29.463989082183183 20.968828865738995 20-21 22.42678322117936 27.08676333370223 29.407623373053088 21.07883007206532 22-23 22.143831941228346 26.91871795811314 29.30935302579116 21.628097074867352 24-25 21.904368956010998 27.048737531348433 29.382109106888116 21.664784405752457 26-27 21.82544467542477 27.245125363010864 29.29404631085938 21.63538365070499 28-29 21.692743649428195 27.379152657363363 29.32338532237328 21.604718370835162 30-31 22.08778721871871 27.131199680515618 29.22984198444705 21.551171116318624 32-33 21.801669400679398 27.30856528581041 29.193503964700675 21.69626134880952 34-35 21.906620386003407 27.323044201320435 29.200845850214186 21.56948956246197 36-37 21.90525004737982 27.237621757055656 29.219808761119122 21.637319434445402 38-39 21.71121814206361 27.44044590168926 29.23588907263029 21.612446883616844 40-41 22.006326793869405 27.27664320555922 29.099720914586445 21.61730908598493 42-43 21.945061873023114 27.294966612613834 28.9312028707603 21.828768643602757 44-45 21.962999936181085 27.408764184763058 28.884044758953166 21.744191120102695 46-47 21.983734352659134 27.409813618190825 28.649049581105047 21.95740244804499 48-49 21.924571927063145 27.50411011450995 28.661630169207776 21.90968778921913 50-51 21.884977579064273 27.664562074794397 28.53388324461986 21.916577101521465 52-53 22.096037431210082 27.584565334948135 28.392836867740535 21.926560366101253 54-55 22.03544440388076 27.484516698058652 28.46124893789556 22.018789960165027 56-57 22.015931507720204 27.58989973961948 28.421990810855736 21.97217794180458 58-59 21.94978727865759 27.534545716658776 28.408087506532354 22.10757949815128 60-61 22.182889357439123 27.439512392655352 28.58339527297741 21.794202976928116 62-63 21.888548363139336 27.49364690110993 28.563273274144414 22.05453146160632 64-65 21.880224581738013 27.468315885896704 28.53946855492747 22.111990977437813 66-67 21.991739770816775 27.544791389554145 28.55278051707526 21.910688322553813 68-69 21.936890156158942 27.712425630673398 28.437461486017522 21.913222727150135 70-71 21.948456391244292 27.521374399730202 28.226244704920973 22.303924504104533 72-73 22.001432525459244 27.58789916036545 28.166779637196754 22.243888676978553 74-75 21.916546706033234 27.665865700769704 28.328976671966956 22.088610921230106 76-77 22.03837766352801 27.38581041257498 28.23025606505396 22.345555858843053 78-79 22.045497507490932 27.456478847748027 27.965911503080164 22.532112141680873 80-81 22.212207865202004 27.679424097160137 27.962085265286003 22.146282772351856 82-83 22.253386801545506 27.507324815197233 27.990785854962418 22.248502528294843 84-85 22.195954614724556 27.45032019298951 27.90145983723178 22.45226535505416 86-87 22.01706187219387 27.722446249848097 27.91566485516681 22.34482702279122 88-89 22.313284760395447 27.702758073502242 27.903166917294925 22.080790248807382 90-91 22.393640958781734 27.697136046347186 27.866537200385444 22.042685794485635 92-93 22.193106261378873 27.461360764524308 27.8581396374897 22.487393336607127 94-95 22.28509535071723 27.831261747800955 27.852804521912443 22.03083837956936 96-97 22.586338292508977 27.64967007729668 27.945396140458683 21.818595489735657 98-99 23.266641791958374 29.72665321445281 28.258729612098264 18.747975381490555 100 22.16963128670227 30.59363047486307 22.231327473841983 25.00541076459267 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1418.0 1 1251.0 2 1734.0 3 2699.5 4 3345.0 5 4262.0 6 5281.5 7 6935.0 8 9422.5 9 11191.5 10 11287.5 11 11092.5 12 11981.5 13 13992.0 14 17646.5 15 21462.5 16 24173.5 17 25738.5 18 25362.5 19 23506.0 20 21589.5 21 20599.5 22 21704.0 23 25399.0 24 31815.5 25 41075.5 26 52975.0 27 66756.0 28 80896.0 29 96336.5 30 111680.5 31 126329.0 32 142479.0 33 158658.0 34 175407.0 35 190366.0 36 204921.5 37 218906.5 38 228384.5 39 237643.5 40 248796.0 41 256983.5 42 262022.5 43 268053.5 44 272276.5 45 275226.5 46 278112.5 47 279269.0 48 277850.5 49 272519.0 50 265742.0 51 257502.5 52 246803.5 53 234557.5 54 220106.5 55 203780.0 56 186482.0 57 167898.5 58 149132.0 59 130553.5 60 110485.0 61 89787.5 62 70614.0 63 54984.5 64 42483.5 65 31889.0 66 23302.0 67 17506.0 68 13376.5 69 9811.0 70 7165.5 71 5209.0 72 3704.0 73 2571.0 74 1741.5 75 1171.5 76 748.5 77 434.5 78 270.5 79 167.5 80 102.5 81 72.5 82 57.5 83 38.5 84 25.0 85 17.5 86 12.0 87 7.0 88 3.5 89 1.5 90 1.0 91 1.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.006473724694966933 6 7.492736915470989E-5 7 0.0 8 0.0 9 1.4985473830941978E-5 10-11 7.492736915470989E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.894040618937975E-4 26-27 0.0 28-29 7.571525994585534E-4 30-31 0.0024837162758602886 32-33 1.4285969929386704E-4 34-35 4.52342239424295E-5 36-37 3.103141537237282E-4 38-39 5.480496018381583E-4 40-41 6.050720200375344E-4 42-43 2.235069332236043E-4 44-45 0.0 46-47 0.0014406781585283098 48-49 6.316871487276598E-5 50-51 0.0020137325416154147 52-53 0.0015074379232252243 54-55 0.0026491332811260236 56-57 0.0023768814094906757 58-59 0.0035875473773308614 60-61 0.00275340791936175 62-63 0.002942375080177643 64-65 0.004333069382079163 66-67 0.0016319952240885878 68-69 1.4509401708234538E-4 70-71 9.391748978022618E-4 72-73 0.006652556290409388 74-75 0.0061325537006408385 76-77 0.0049932224088385 78-79 0.00271699567488251 80-81 4.5123246476799475E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0020814932745264604 90-91 3.9783159049944065E-4 92-93 0.0 94-95 9.67344107418533E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 191.0 22-23 372.0 24-25 501.0 26-27 1441.0 28-29 4191.0 30-31 12754.0 32-33 16531.0 34-35 22548.0 36-37 35551.0 38-39 40955.0 40-41 39981.0 42-43 45127.0 44-45 53150.0 46-47 54388.0 48-49 51470.0 50-51 47234.0 52-53 44204.0 54-55 47903.0 56-57 49009.0 58-59 27657.0 60-61 50192.0 62-63 49275.0 64-65 51919.0 66-67 54445.0 68-69 55332.0 70-71 54318.0 72-73 50807.0 74-75 51066.0 76-77 52731.0 78-79 53825.0 80-81 54122.0 82-83 50813.0 84-85 50422.0 86-87 52505.0 88-89 53922.0 90-91 54415.0 92-93 54440.0 94-95 63082.0 96-97 223931.0 98-99 442278.0 100-101 4454084.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.56929400335417 #Duplication Level Percentage of deduplicated Percentage of total 1 90.07390650646632 77.07560587882452 2 7.02652830437952 12.025101326006817 3 1.6396002396347353 4.208983048598239 4 0.5752462861740263 1.9689367434385145 5 0.25672375975313244 1.0983835437981124 6 0.14669289786432405 0.753144462333381 7 0.07753442822017008 0.4644196398627586 8 0.05434336753889664 0.37200988752545433 9 0.038839989828471345 0.29911594578477746 >10 0.10789761271874207 1.4010900007037812 >50 0.0017553895886544602 0.10307056419190097 >100 8.215892907381481E-4 0.1358146432263388 >500 8.222140676497862E-5 0.06071746729808403 >1k 2.7407135552353366E-5 0.03360684840732428 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.9970947661883952E-5 2 0.0 1.4985473830941976E-5 0.0 1.4985473830941976E-5 2.9970947661883952E-5 3 0.0 2.9970947661883952E-5 0.0 2.9970947661883952E-5 2.9970947661883952E-5 4 0.0 4.4956421492825927E-5 0.0 2.9970947661883952E-5 4.4956421492825927E-5 5 0.0 4.4956421492825927E-5 0.0 4.4956421492825927E-5 4.4956421492825927E-5 6 0.0 4.4956421492825927E-5 0.0 4.4956421492825927E-5 4.4956421492825927E-5 7 0.0 4.4956421492825927E-5 0.0 4.4956421492825927E-5 4.4956421492825927E-5 8 0.0 5.9941895323767904E-5 0.0 4.4956421492825927E-5 4.4956421492825927E-5 9 0.0 7.492736915470988E-5 0.0 7.492736915470988E-5 4.4956421492825927E-5 10-11 0.0 7.492736915470988E-5 0.0 9.740557990112284E-5 4.4956421492825927E-5 12-13 0.0 7.492736915470988E-5 0.0 1.1239105373206482E-4 4.4956421492825927E-5 14-15 0.0 1.348692644784778E-4 0.0 1.3486926447847777E-4 8.242010607018086E-5 16-17 0.0 1.4236200139394878E-4 0.0 1.798256859713037E-4 8.991284298565185E-5 18-19 0.0 1.4985473830941975E-4 0.0 2.1728937054865866E-4 1.0489831681659383E-4 20-21 0.0 1.6484021214036173E-4 0.0 2.3976758129507162E-4 1.0489831681659383E-4 22-23 0.0 1.723329490558327E-4 0.0 2.547530551260136E-4 1.1988379064753582E-4 24-25 0.0 2.0230389671771666E-4 0.0 3.221876873652525E-4 1.4985473830941975E-4 26-27 0.0 2.0979663363318766E-4 0.0 4.3457874109731733E-4 1.4985473830941975E-4 28-29 0.0 2.2478210746412964E-4 0.0 7.118100069697438E-4 1.723329490558327E-4 30-31 0.0 2.997094766188395E-4 0.0 0.0017308222274737984 1.798256859713037E-4 32-33 0.0 2.997094766188395E-4 0.0 0.0034616444549475964 2.0979663363318766E-4 34-35 0.0 3.2968042428072346E-4 0.0 0.005619552686603241 2.0979663363318766E-4 36-37 0.0 3.671441088580784E-4 0.0 0.009290993775184025 2.0979663363318766E-4 38-39 0.0 3.8962231960449137E-4 0.0 0.019128957345197435 2.0979663363318766E-4 40-41 0.0 3.8962231960449137E-4 0.0 0.029708701869842466 2.0979663363318766E-4 42-43 0.0 4.195932672663754E-4 0.0 0.03580029698212038 2.1728937054865866E-4 44-45 0.0 4.645496887592013E-4 0.0 0.04293338252564877 2.2478210746412964E-4 46-47 0.0 4.945206364210852E-4 0.0 0.05095061102520272 2.3976758129507162E-4 48-49 0.0 4.945206364210852E-4 0.0 0.059125186999981566 2.997094766188395E-4 50-51 0.0 5.619552686603241E-4 0.0 0.06664789486311444 2.997094766188395E-4 52-53 0.0 5.694480055757951E-4 0.0 0.08932091676932966 3.072022135343105E-4 54-55 0.0 5.694480055757951E-4 0.0 0.11751608578224698 3.146949504497815E-4 56-57 0.0 5.694480055757951E-4 0.0 0.1511659672696272 3.371731611961945E-4 58-59 0.0 5.99418953237679E-4 0.0 0.343894146209372 3.4466589811166546E-4 60-61 0.0 6.0691169015315E-4 0.0 0.5232253115442546 3.4466589811166546E-4 62-63 0.0 6.29389900899563E-4 0.0 0.5299238183466857 3.746368457735494E-4 64-65 0.0 6.893317962233309E-4 0.0 0.535768153140753 3.746368457735494E-4 66-67 0.0 6.893317962233309E-4 0.0 0.5407058667680484 3.746368457735494E-4 68-69 0.0 7.118100069697438E-4 0.0 0.5453363781818095 3.746368457735494E-4 70-71 0.0 7.193027438852148E-4 0.0 0.5498844694895003 3.8962231960449137E-4 72-73 0.0 7.193027438852148E-4 0.0 0.5536458234210668 4.195932672663753E-4 74-75 0.0 7.342882177161568E-4 0.0 0.556575483555016 4.195932672663753E-4 76-77 0.0 7.492736915470988E-4 0.0 0.5596849693749364 4.195932672663753E-4 78-79 0.0 7.642591653780408E-4 0.0 0.5617005156051981 4.195932672663753E-4 80-81 0.0 7.642591653780408E-4 0.0 0.5623373982430131 4.270860041818463E-4 82-83 0.0 7.642591653780408E-4 0.0 0.5628019479317723 4.3457874109731733E-4 84-85 0.0 8.017228499553957E-4 0.0 0.5630117445654055 4.3457874109731733E-4 86-87 0.0 8.391865345327508E-4 0.0 0.5631541065667994 4.3457874109731733E-4 88 0.0 9.141139036874605E-4 0.0 0.5631840775144613 4.3457874109731733E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8925 0.0 51.74541 1 GTATCAA 16290 0.0 37.326694 1 TCAACGC 19090 0.0 31.492453 4 ATCAACG 19160 0.0 31.265493 3 CAACGCA 19570 0.0 30.741936 5 TATCAAC 19815 0.0 30.27527 2 AACGCAG 20270 0.0 29.699673 6 CGAGACC 4340 0.0 29.400463 86-87 ACCGAGG 4590 0.0 28.565979 90-91 AGACCGA 4575 0.0 28.122417 88-89 GAGACCG 4500 0.0 27.853292 88-89 ACGAGAC 4510 0.0 27.685114 86-87 GACCGAG 4630 0.0 27.53086 90-91 ATCTCCG 4285 0.0 27.377632 74-75 CCCACGA 4650 0.0 26.895817 82-83 TCTCCGA 4520 0.0 26.011406 74-75 ACGCAGA 23285 0.0 25.854088 7 GCCCACG 4850 0.0 25.620699 82-83 TCCGAGC 4670 0.0 25.582302 76-77 CGCAGAG 23775 0.0 25.303202 8 >>END_MODULE