##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138870_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6173815 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.521092063821154 33.0 31.0 33.0 18.0 34.0 2 32.09298869499653 33.0 32.0 33.0 31.0 34.0 3 32.20149955902469 33.0 33.0 33.0 30.0 34.0 4 32.70659681250572 33.0 33.0 34.0 31.0 34.0 5 32.73162590715789 33.0 33.0 34.0 32.0 34.0 6 36.16661788537557 38.0 36.0 38.0 33.0 38.0 7 37.145792998332475 38.0 38.0 38.0 36.0 38.0 8 37.02880504193922 38.0 38.0 38.0 36.0 38.0 9 37.33091986073441 38.0 38.0 38.0 37.0 38.0 10-11 37.43144206621028 38.0 38.0 38.0 37.0 38.0 12-13 37.45599949140038 38.0 38.0 38.0 37.0 38.0 14-15 37.48504644211076 38.0 38.0 38.0 37.0 38.0 16-17 37.493165490057606 38.0 38.0 38.0 37.0 38.0 18-19 37.50570004122248 38.0 38.0 38.0 37.0 38.0 20-21 37.512828829719254 38.0 38.0 38.0 37.0 38.0 22-23 37.53029663027516 38.0 38.0 38.0 38.0 38.0 24-25 37.49344290989358 38.0 38.0 38.0 37.5 38.0 26-27 37.50301507521711 38.0 38.0 38.0 37.5 38.0 28-29 37.49652088885276 38.0 38.0 38.0 37.0 38.0 30-31 37.48782467776472 38.0 38.0 38.0 37.5 38.0 32-33 37.48223103234838 38.0 38.0 38.0 37.0 38.0 34-35 37.46937901266949 38.0 38.0 38.0 37.0 38.0 36-37 37.44936154153914 38.0 38.0 38.0 37.0 38.0 38-39 37.42326002889599 38.0 38.0 38.0 37.0 38.0 40-41 37.40223169370668 38.0 38.0 38.0 37.0 38.0 42-43 37.38013668229303 38.0 38.0 38.0 37.0 38.0 44-45 37.34753292219729 38.0 38.0 38.0 37.0 38.0 46-47 37.30728619909529 38.0 38.0 38.0 37.0 38.0 48-49 37.262826004332155 38.0 38.0 38.0 37.0 38.0 50-51 37.24368462346641 38.0 38.0 38.0 37.0 38.0 52-53 37.23512287437005 38.0 38.0 38.0 37.0 38.0 54-55 37.21566963433959 38.0 38.0 38.0 37.0 38.0 56-57 37.18504119851585 38.0 38.0 38.0 37.0 38.0 58-59 37.19022478686202 38.0 38.0 38.0 37.0 38.0 60-61 37.20685692712691 38.0 38.0 38.0 37.0 38.0 62-63 37.21305235961347 38.0 38.0 38.0 37.0 38.0 64-65 37.21870504885976 38.0 38.0 38.0 37.0 38.0 66-67 37.22718626505285 38.0 38.0 38.0 37.0 38.0 68-69 37.228664256499286 38.0 38.0 38.0 37.0 38.0 70-71 37.1994555216645 38.0 38.0 38.0 37.0 38.0 72-73 37.17743293628308 38.0 38.0 38.0 36.0 38.0 74-75 37.160806445204855 38.0 38.0 38.0 36.0 38.0 76-77 37.16399326931645 38.0 38.0 38.0 36.0 38.0 78-79 37.16751881450517 38.0 38.0 38.0 36.0 38.0 80-81 37.15677850295414 38.0 38.0 38.0 36.0 38.0 82-83 37.15910258949506 38.0 38.0 38.0 36.0 38.0 84-85 37.1472796524404 38.0 38.0 38.0 36.0 38.0 86-87 37.120884413507994 38.0 38.0 38.0 36.0 38.0 88-89 37.08283559610999 38.0 38.0 38.0 36.0 38.0 90-91 37.088836926494906 38.0 38.0 38.0 36.0 38.0 92-93 37.067854860498656 38.0 38.0 38.0 36.0 38.0 94-95 37.05449457005908 38.0 38.0 38.0 36.0 38.0 96-97 37.04931895558792 38.0 38.0 38.0 36.0 38.0 98-99 37.08633517143413 38.0 38.0 38.0 36.0 38.0 100 35.44240750419917 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 21.0 20 48.0 21 147.0 22 445.0 23 1085.0 24 2395.0 25 4591.0 26 7927.0 27 13060.0 28 20054.0 29 29473.0 30 41215.0 31 54682.0 32 71833.0 33 95690.0 34 138183.0 35 242797.0 36 682842.0 37 4767321.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.152739432587474 19.916210641232365 14.25863910726188 24.672410818918287 2 13.965465437496913 20.833617463432255 43.009711175342964 22.19120592372787 3 17.76476943348643 26.227284102293314 30.620661616844693 25.387284847375568 4 11.994690479063594 18.11035802012208 39.818442891469864 30.076508609344465 5 12.99225608882916 37.606550865463554 35.84523387570734 13.555959169999943 6 29.18022595767833 38.39029085924399 19.173683807295042 13.25579937578264 7 25.949125459703602 33.09200227088113 23.552778954341846 17.406093315073417 8 23.844187103112095 36.96344966604927 21.572253136836785 17.620110094001845 9 25.450831528128315 17.00676437612147 21.783892420471364 35.75851167527885 10-11 23.788570872767696 26.99876664560729 29.324411889021267 19.888250592603747 12-13 24.800313906393374 24.670361842717995 29.349332624965275 21.179991625923357 14-15 21.884944722185555 25.910000542614252 27.34124686275828 24.863807872441917 16-17 21.21542352662009 28.97187557450296 28.000895718449613 21.81180518042734 18-19 21.209851607150522 28.075250068231718 29.91072780768455 20.80417051693321 20-21 22.143698382933177 27.226485731672806 29.741683645925004 20.888132239469012 22-23 21.819437044937043 27.12291439855679 29.62849514348439 21.429153413021776 24-25 21.555594092562956 27.208673386199596 29.759799876834574 21.475932644402878 26-27 21.48733986489289 27.407559400987118 29.715779626614957 21.38932110750503 28-29 21.37948008442558 27.53073329082447 29.71525816353291 21.37452846121704 30-31 21.734420822571675 27.261359758560253 29.615799705875528 21.388419712992544 32-33 21.520572404252043 27.412659135362766 29.575634695436946 21.49113376494824 34-35 21.633353590641942 27.481684809873602 29.557319346273538 21.327642253210918 36-37 21.60595600528196 27.397653794206033 29.553389734128793 21.44300046638321 38-39 21.47510083157494 27.497656623561955 29.63867716626864 21.388565378594464 40-41 21.73843165641512 27.351171899171444 29.515969947618885 21.39442649679455 42-43 21.62445671466745 27.43052444285147 29.302716508235548 21.642302334245525 44-45 21.68972527122029 27.528407969048335 29.199269410523037 21.58259734920834 46-47 21.73533546036178 27.519431903074587 28.978953054076623 21.76627958248701 48-49 21.705641714941713 27.58817893279292 28.963711158887705 21.742468193377654 50-51 21.664559024110684 27.753122746270847 28.827825016244873 21.7544932133736 52-53 21.852418668106154 27.7086251887815 28.659846511012958 21.779109632099384 54-55 21.835215218490568 27.62165300606218 28.665358366918063 21.87777340852919 56-57 21.861234674137286 27.71831990292739 28.584408653624372 21.83603676931095 58-59 21.815779170105895 27.798919158902162 28.661496517888402 21.72380515310354 60-61 21.902376447055392 27.77947055936497 28.648940787652183 21.669212205927458 62-63 21.874870314187636 27.785669612148983 28.598104172458534 21.74135590120484 64-65 21.81949695952989 27.731271368782107 28.576627642688518 21.872604028999483 66-67 21.899348481303793 27.79931733173096 28.415509452855787 21.88582473410946 68-69 21.849338899828457 27.732558733855832 28.537859877733478 21.880242488582237 70-71 21.8941022609537 27.468675688843962 28.564572076821825 22.072649973380507 72-73 21.958598561310016 27.53641678579336 28.551947862891797 21.95303679000483 74-75 21.800781230150186 27.706112678357623 28.432745449762397 22.060360641729794 76-77 21.907929418229127 27.64522150571785 28.346603115500336 22.10024596055269 78-79 21.909719542354402 27.67025745934586 28.326079426905615 22.093943571394124 80-81 21.94736175177441 27.691739158311044 28.268899027313672 22.092000062600874 82-83 21.985386557442094 27.620505051340434 28.400104429866328 21.994003961351147 84-85 22.137188676752327 27.655362274559025 28.21701377419568 21.990435274492963 86-87 21.909893469777856 27.711019172559297 28.28113491264046 22.097952445022393 88-89 22.026401249790794 27.663954527719838 28.221746000822563 22.08789822166681 90-91 22.055687239238527 27.693124829578142 28.24176568586304 22.00942224532029 92-93 22.107724250363372 27.704245564902013 28.1610300860189 22.027000098715714 94-95 21.99732533026502 27.850822205384386 28.13098504962717 22.020867414723426 96-97 22.055466818251475 27.90368607700756 28.219245401904686 21.821601702836283 98-99 23.11869736378802 29.83531612031794 28.4188764976728 18.627110018221245 100 21.98086398765877 30.66298594865601 22.372794487042217 24.983355576643003 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1443.0 1 1391.5 2 2002.5 3 2909.0 4 3613.5 5 4751.0 6 5850.5 7 7451.0 8 9508.5 9 10591.0 10 10549.5 11 10723.0 12 12000.5 13 14421.0 14 18751.5 15 23505.0 16 26797.0 17 28297.0 18 27476.5 19 25145.0 20 22892.0 21 21860.5 22 23091.5 23 27170.0 24 34209.0 25 44075.5 26 56919.5 27 70878.0 28 84732.5 29 99503.5 30 113364.0 31 127767.5 32 143701.0 33 158120.5 34 173293.0 35 187621.0 36 200876.0 37 213454.5 38 221724.0 39 228808.5 40 237599.5 41 244137.0 42 247827.5 43 253392.5 44 259038.0 45 263117.0 46 263512.5 47 262993.0 48 261818.0 49 255307.5 50 246698.0 51 235800.0 52 222822.5 53 209401.5 54 195217.5 55 179387.0 56 163701.0 57 147669.0 58 130636.5 59 113701.5 60 95207.5 61 76711.5 62 60235.0 63 46432.5 64 35229.0 65 26005.5 66 19169.5 67 14762.0 68 11296.5 69 8343.0 70 6112.5 71 4427.5 72 3168.0 73 2252.0 74 1545.0 75 1074.5 76 711.0 77 429.0 78 288.0 79 189.5 80 117.5 81 79.0 82 50.0 83 30.5 84 23.5 85 17.5 86 10.0 87 7.5 88 7.0 89 7.0 90 6.5 91 5.5 92 4.5 93 3.0 94 3.0 95 3.5 96 2.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.011451590305184072 6 6.478976127402587E-5 7 0.0 8 0.0 9 1.6197440318506466E-5 10-11 2.4296160477759698E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.641784812813849E-4 26-27 1.6201444877257042E-5 28-29 7.293663475877991E-4 30-31 0.0025799726620255284 32-33 2.1143729379781228E-4 34-35 4.078651075886974E-5 36-37 3.1955177537640534E-4 38-39 5.937782920924071E-4 40-41 6.478554365411896E-4 42-43 1.7569496141989641E-4 44-45 0.0 46-47 0.001525451216112719 48-49 1.1188214163074246E-4 50-51 0.001962983175062748 52-53 0.0016033630320558708 54-55 0.002739912239727119 56-57 0.0025964588940405645 58-59 0.0038017004231238522 60-61 0.002974154055541008 62-63 0.0030572782456474413 64-65 0.004532759616356125 66-67 0.0017700436133127133 68-69 1.4197646957714012E-4 70-71 7.367670184808917E-4 72-73 0.006489924078527501 74-75 0.005735962599569519 76-77 0.004542548571200598 78-79 0.002565950929433354 80-81 5.0484550717789344E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0020484492025249984 90-91 2.778028868848616E-4 92-93 0.0 94-95 7.661295441879444E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 67.0 20-21 210.0 22-23 387.0 24-25 601.0 26-27 1907.0 28-29 4508.0 30-31 13875.0 32-33 17433.0 34-35 23956.0 36-37 36936.0 38-39 43558.0 40-41 42822.0 42-43 48045.0 44-45 57337.0 46-47 58740.0 48-49 54174.0 50-51 50466.0 52-53 48703.0 54-55 52815.0 56-57 53838.0 58-59 52940.0 60-61 51679.0 62-63 51423.0 64-65 54518.0 66-67 55982.0 68-69 57085.0 70-71 56942.0 72-73 52955.0 74-75 53061.0 76-77 54839.0 78-79 55969.0 80-81 55501.0 82-83 53529.0 84-85 52990.0 86-87 54866.0 88-89 55568.0 90-91 55457.0 92-93 55100.0 94-95 63034.0 96-97 183750.0 98-99 394989.0 100-101 3941260.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.10845755841537 #Duplication Level Percentage of deduplicated Percentage of total 1 90.57795562823843 78.90106003570438 2 6.889120358434021 12.002012967149305 3 1.5309385626938372 4.000730904388726 4 0.5077646528385829 1.769223828458128 5 0.21112579289502956 0.9195421084941738 6 0.11015183283284732 0.5757093753181046 7 0.05483565778736174 0.3343654698340733 8 0.03432016923496256 0.23916616041610955 9 0.020714019053085626 0.16239296245949247 >10 0.060928024233961375 0.8004202096707691 >50 0.0011736145127986355 0.06699822776994976 >100 8.366598283982004E-4 0.13164683538252267 >500 1.0802194950726273E-4 0.0681256751666445 >1k 2.7005467135199212E-5 0.028605239787546848 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6197440318506466E-5 0.0 0.0 0.0 3 0.0 1.6197440318506466E-5 0.0 0.0 0.0 4 0.0 4.8592320955519396E-5 0.0 0.0 0.0 5 0.0 4.8592320955519396E-5 0.0 0.0 0.0 6 0.0 4.8592320955519396E-5 0.0 0.0 1.6197440318506466E-5 7 0.0 4.8592320955519396E-5 0.0 0.0 1.6197440318506466E-5 8 0.0 6.478976127402587E-5 0.0 0.0 1.6197440318506466E-5 9 0.0 1.6197440318506466E-4 0.0 0.0 1.6197440318506466E-5 10-11 0.0 1.6197440318506466E-4 0.0 4.8592320955519396E-5 1.6197440318506466E-5 12-13 0.0 1.6197440318506466E-4 0.0 4.8592320955519396E-5 1.6197440318506466E-5 14-15 0.0 2.42961604777597E-4 0.0 5.669104111477263E-5 3.239488063701293E-5 16-17 0.0 2.42961604777597E-4 0.0 6.478976127402587E-5 4.8592320955519396E-5 18-19 0.0 2.5915904509610346E-4 0.0 8.098720159253233E-5 4.8592320955519396E-5 20-21 0.0 2.753564854146099E-4 0.0 1.2148080238879851E-4 6.478976127402587E-5 22-23 0.0 3.644424071663955E-4 0.0 2.0246800398133084E-4 1.1338208222954526E-4 24-25 2.42961604777597E-5 4.211334482811681E-4 0.0 2.5915904509610346E-4 1.2957952254805173E-4 26-27 3.239488063701293E-5 4.616270490774343E-4 0.0 3.158500862108761E-4 1.5387568302581143E-4 28-29 3.239488063701293E-5 4.85923209555194E-4 0.0 5.183180901922069E-4 1.6197440318506466E-4 30-31 3.239488063701293E-5 5.831078514662328E-4 0.0 0.0014496709085063287 1.6197440318506466E-4 32-33 6.478976127402587E-5 5.91206571625486E-4 0.0 0.0033123765451345726 1.7817184350357113E-4 34-35 8.908592175178555E-5 6.802924933772716E-4 0.0 0.005677202831636516 1.7817184350357113E-4 36-37 1.0528336207029203E-4 7.612796949698039E-4 0.0 0.009613180829033587 1.7817184350357113E-4 38-39 1.1338208222954527E-4 7.774771352883103E-4 0.0 0.014529103965700299 1.7817184350357113E-4 40-41 1.2957952254805173E-4 8.908592175178556E-4 0.0 0.01980946950953341 1.7817184350357113E-4 42-43 1.2957952254805173E-4 9.232540981548687E-4 0.0 0.02466870160508535 1.7817184350357113E-4 44-45 1.2957952254805173E-4 0.001044734900543667 0.0 0.030661754522932738 1.7817184350357113E-4 46-47 1.2957952254805173E-4 0.0011338208222954527 0.0 0.03746467945670546 1.7817184350357113E-4 48-49 1.2957952254805173E-4 0.0011338208222954527 0.0 0.0443323941517522 1.9436928382207758E-4 50-51 1.2957952254805173E-4 0.0012795977851620109 0.0 0.050625099715491964 1.9436928382207758E-4 52-53 1.6197440318506466E-4 0.0012795977851620109 0.0 0.05680442319700218 2.3486288461834376E-4 54-55 1.6197440318506466E-4 0.001287696505321264 0.0 0.06357495325013787 2.753564854146099E-4 56-57 1.6197440318506466E-4 0.0013119926657990239 0.0 0.07010252169849598 2.753564854146099E-4 58-59 1.6197440318506466E-4 0.001320091385958277 0.0 0.07696213767338347 2.753564854146099E-4 60-61 1.6197440318506466E-4 0.0013443875464360367 0.0 0.08334392915887502 2.753564854146099E-4 62-63 1.6197440318506466E-4 0.0013767824270730497 0.0 0.0895637462411815 2.753564854146099E-4 64-65 1.6197440318506466E-4 0.0016926325132839257 0.0 0.0955406017187104 2.753564854146099E-4 66-67 1.6197440318506466E-4 0.0017169286737616855 0.0 0.1019466893646797 2.8345520557386316E-4 68-69 1.6197440318506466E-4 0.001741224834239445 0.0 0.1083041846896935 2.915539257331164E-4 70-71 1.6197440318506466E-4 0.0017574222745579517 0.0 0.11351976047225257 2.915539257331164E-4 72-73 1.6197440318506466E-4 0.001773619714876458 0.0 0.11753672567124218 3.0775136605162287E-4 74-75 1.6197440318506466E-4 0.0018627056366282437 0.0 0.12071142397366943 3.0775136605162287E-4 76-77 1.6197440318506466E-4 0.001943692838220776 0.0 0.12387802355593745 3.0775136605162287E-4 78-79 1.7817184350357113E-4 0.0019922851591762953 0.0 0.12608897415941359 3.0775136605162287E-4 80-81 1.7817184350357113E-4 0.0019922851591762953 0.0 0.1269717346567722 3.158500862108761E-4 82-83 1.7817184350357113E-4 0.0020003838793355485 0.0 0.12756294122839767 3.3204752652938257E-4 84-85 1.7817184350357113E-4 0.002024680039813308 0.0 0.12783829771381228 3.401462466886358E-4 86-87 1.7817184350357113E-4 0.002024680039813308 0.0 0.12792738363556408 3.401462466886358E-4 88 1.7817184350357113E-4 0.0021056672414058405 0.0 0.12792738363556408 3.401462466886358E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9905 0.0 41.07577 1 GTATCAA 16635 0.0 34.693 1 ATCAACG 19925 0.0 28.328403 3 TCAACGC 20095 0.0 28.151823 4 CAACGCA 20215 0.0 28.00561 5 TATCAAC 20565 0.0 27.693327 2 AACGCAG 20795 0.0 27.221628 6 ACGCAGA 23560 0.0 23.99104 7 CGCAGAG 23625 0.0 23.942913 8 TACATGG 17685 0.0 20.951181 2 GTACATG 18195 0.0 20.851545 1 GCAGAGT 27500 0.0 20.599861 9 ACATGGG 17905 0.0 19.915081 3 GAGTACT 16255 0.0 19.088554 12-13 AGAGTAC 23760 0.0 18.77525 10-11 CATGGGG 12745 0.0 18.364702 4 CAGAGTA 26625 0.0 17.905241 10-11 AGTACTT 17460 0.0 16.996923 12-13 GTACTTT 18365 0.0 16.884195 14-15 ATGGGGG 7810 0.0 15.525472 5 >>END_MODULE