##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138868_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7474491 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.748898754443612 33.0 31.0 33.0 25.0 34.0 2 32.11487765521425 33.0 32.0 33.0 31.0 34.0 3 32.21944183222644 33.0 33.0 33.0 30.0 34.0 4 32.704125806024784 33.0 33.0 34.0 31.0 34.0 5 32.73264895228317 33.0 33.0 34.0 32.0 34.0 6 36.13317682769301 38.0 36.0 38.0 33.0 38.0 7 37.12079163651411 38.0 38.0 38.0 36.0 38.0 8 36.997049698768784 38.0 38.0 38.0 35.0 38.0 9 37.30623316022456 38.0 38.0 38.0 37.0 38.0 10-11 37.4072494033373 38.0 38.0 38.0 37.0 38.0 12-13 37.43694172619915 38.0 38.0 38.0 37.0 38.0 14-15 37.465319979648115 38.0 38.0 38.0 37.0 38.0 16-17 37.472755937494604 38.0 38.0 38.0 37.0 38.0 18-19 37.48623879539088 38.0 38.0 38.0 37.0 38.0 20-21 37.495699116930105 38.0 38.0 38.0 37.0 38.0 22-23 37.51190298006007 38.0 38.0 38.0 37.5 38.0 24-25 37.474256800270865 38.0 38.0 38.0 37.0 38.0 26-27 37.48596337430539 38.0 38.0 38.0 37.0 38.0 28-29 37.47974201576982 38.0 38.0 38.0 37.0 38.0 30-31 37.47133612664111 38.0 38.0 38.0 37.0 38.0 32-33 37.46853485117759 38.0 38.0 38.0 37.0 38.0 34-35 37.45822889580698 38.0 38.0 38.0 37.0 38.0 36-37 37.437767951985094 38.0 38.0 38.0 37.0 38.0 38-39 37.41543604154786 38.0 38.0 38.0 37.0 38.0 40-41 37.39711942603349 38.0 38.0 38.0 37.0 38.0 42-43 37.381980990207104 38.0 38.0 38.0 37.0 38.0 44-45 37.35598320292515 38.0 38.0 38.0 37.0 38.0 46-47 37.32396009736826 38.0 38.0 38.0 37.0 38.0 48-49 37.286221182994595 38.0 38.0 38.0 37.0 38.0 50-51 37.27261239758351 38.0 38.0 38.0 37.0 38.0 52-53 37.26110871600155 38.0 38.0 38.0 37.0 38.0 54-55 37.24051781146527 38.0 38.0 38.0 37.0 38.0 56-57 37.209428637767985 38.0 38.0 38.0 37.0 38.0 58-59 37.213723713147445 38.0 38.0 38.0 37.0 38.0 60-61 37.22900002664454 38.0 38.0 38.0 37.0 38.0 62-63 37.23463533644127 38.0 38.0 38.0 37.0 38.0 64-65 37.23968625860132 38.0 38.0 38.0 37.0 38.0 66-67 37.244182147461046 38.0 38.0 38.0 37.0 38.0 68-69 37.24391302410834 38.0 38.0 38.0 37.0 38.0 70-71 37.210970761824115 38.0 38.0 38.0 37.0 38.0 72-73 37.18571350757334 38.0 38.0 38.0 36.0 38.0 74-75 37.16893343528912 38.0 38.0 38.0 36.0 38.0 76-77 37.17165326099016 38.0 38.0 38.0 36.0 38.0 78-79 37.170485478797104 38.0 38.0 38.0 36.0 38.0 80-81 37.15969423232437 38.0 38.0 38.0 36.0 38.0 82-83 37.160295192876376 38.0 38.0 38.0 36.0 38.0 84-85 37.1473790763352 38.0 38.0 38.0 36.0 38.0 86-87 37.1167284012256 38.0 38.0 38.0 36.0 38.0 88-89 37.0774176030597 38.0 38.0 38.0 36.0 38.0 90-91 37.08130371669846 38.0 38.0 38.0 36.0 38.0 92-93 37.05584491684809 38.0 38.0 38.0 36.0 38.0 94-95 37.041197235919284 38.0 38.0 38.0 36.0 38.0 96-97 37.030056865741315 38.0 38.0 38.0 36.0 38.0 98-99 37.069810004401944 38.0 38.0 38.0 36.0 38.0 100 35.44308585636222 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 6.0 19 22.0 20 55.0 21 159.0 22 507.0 23 1289.0 24 2847.0 25 5573.0 26 9555.0 27 15339.0 28 23474.0 29 34294.0 30 47933.0 31 64918.0 32 87127.0 33 116693.0 34 170019.0 35 299291.0 36 829762.0 37 5765623.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.16260224274804 19.676523792723813 14.121041820774149 25.039832143754005 2 14.23077504541781 20.49342222768079 42.46093814281133 22.814864584090074 3 17.978495124283377 25.693455246651574 30.2818078180842 26.046241810980842 4 12.36738394627808 17.71732683871049 39.06645950874782 30.848829706263608 5 13.410642858041259 37.241279095439225 35.55106151070021 13.797016535819312 6 30.103719520475323 37.590175109054336 18.824574535904482 13.481530834565861 7 26.530643098143564 32.56318926952732 23.169035368170317 17.737132264158795 8 24.236479577399873 36.70518479591046 21.20982451108029 17.848511115609377 9 25.55333868219254 16.93910662277873 21.43589443080472 36.071660264224015 10-11 24.250713042007753 26.59849880048664 28.923152544397844 20.227635613107758 12-13 25.018987915029932 24.197955419305476 29.025862764434397 21.7571939012302 14-15 22.172707144874483 25.486370911410557 26.69979133027252 25.641130613442442 16-17 21.814167680448072 28.540016972393172 27.402688691444006 22.24312665571475 18-19 21.83655716489591 27.76803129470622 29.122210462224118 21.273201078173752 20-21 22.5630250414414 26.890122431068136 29.0306726550992 21.516179872391266 22-23 22.351137637641084 26.83662433456876 28.8217412592086 21.99049676858155 24-25 22.150454734935927 26.93274640794423 28.922008959492153 21.99478989762769 26-27 22.07654630611805 27.074653496799623 28.862940131692426 21.985860065389904 28-29 21.98845826041828 27.128208189840215 28.914211471302064 21.96912207843944 30-31 22.310159457539775 26.89806706702743 28.846725291639103 21.94504818379369 32-33 22.06466142543329 27.079760998683593 28.76666954277586 22.088908033107263 34-35 22.18826348247258 27.107093789954263 28.830505443408672 21.87413728416449 36-37 22.2353351620081 27.03000816074849 28.71801199569177 22.016644681551636 38-39 22.04932527630285 27.146731248438833 28.817561482111948 21.986381993146374 40-41 22.262002503281476 26.97357351340013 28.737889090126284 22.026534893192114 42-43 22.196719781279228 27.067860644165737 28.555892914841447 22.179526659713584 44-45 22.199966900719247 27.17156363253351 28.491984540885046 22.136484925862195 46-47 22.267769302809988 27.13236856526556 28.29153019893425 22.3083319329902 48-49 22.253695937504798 27.2233074834552 28.249595481930847 22.273401097109165 50-51 22.219977700774525 27.333798833766625 28.150707156216765 22.295516309242082 52-53 22.39401119718895 27.271759219813408 28.032927917871465 22.30130166512618 54-55 22.33772371749799 27.228882300493645 28.022558407573595 22.41083557443477 56-57 22.354869194570355 27.348495861135625 27.983811031102395 22.31282391319163 58-59 22.29402118695709 27.355735082476514 28.076281367086654 22.27396236347975 60-61 22.423315388025994 27.34653606394961 28.02122116760782 22.208927380416572 62-63 22.365810975503543 27.401233021774296 27.995054218000025 22.237901784722133 64-65 22.358041404192775 27.31198456470212 27.953124796431556 22.37684923467355 66-67 22.378402401636347 27.3545456262502 27.852572109614616 22.41447986249884 68-69 22.317108074056787 27.305501465866193 27.951197722574804 22.42619273750222 70-71 22.362042842635063 27.176148394153994 27.922899670372857 22.538909092838086 72-73 22.458964875307565 27.163599289651213 27.83793576475023 22.53950007029099 74-75 22.329263597341146 27.304905638763998 27.843628588065716 22.522202175829143 76-77 22.43549823975664 27.26445836160376 27.71921634410599 22.580827054533607 78-79 22.361357335539907 27.237359610157373 27.738942130879103 22.662340923423617 80-81 22.39449910374199 27.327787146017428 27.73649686563802 22.541216884602562 82-83 22.466290838333563 27.28799871288415 27.79588946006633 22.44982098871596 84-85 22.585742662919152 27.28089235909621 27.665980335659096 22.46738464232554 86-87 22.419555507652113 27.33275956193914 27.723691653822414 22.523993276586335 88-89 22.509905781972076 27.25518079652559 27.677898625567416 22.557014795934915 90-91 22.52962786429149 27.384319571250625 27.619024856101614 22.467027708356273 92-93 22.60652044030685 27.264579710074127 27.674234624157908 22.454665225461117 94-95 22.469531171081993 27.383538252722 27.651373694358465 22.49555688183754 96-97 22.553093700153166 27.49021873834564 27.684369600789726 22.272317960711476 98-99 23.70182160829564 29.358220455482435 27.904374907897132 19.03558302832479 100 22.46328643956034 30.181872292447736 21.869684285659975 25.48515698233195 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1664.0 1 1497.5 2 1911.0 3 2768.5 4 3483.0 5 4516.5 6 5443.0 7 6973.5 8 9164.5 9 10451.0 10 10542.5 11 10643.0 12 11744.0 13 13889.5 14 17781.0 15 22199.5 16 25120.0 17 26358.5 18 25715.0 19 23727.0 20 21975.5 21 21312.0 22 22870.5 23 27366.5 24 34347.5 25 44323.5 26 56734.5 27 70733.0 28 86609.0 29 104151.0 30 121140.5 31 138479.5 32 156718.0 33 173391.0 34 189267.0 35 205620.5 36 222892.0 37 238510.0 38 251713.5 39 262931.0 40 272912.0 41 281514.0 42 289029.0 43 297792.0 44 304010.5 45 310114.5 46 315289.0 47 317401.5 48 317611.5 49 313083.0 50 307684.0 51 300616.5 52 289008.5 53 274817.5 54 259858.5 55 243279.5 56 224861.0 57 204394.0 58 182469.5 59 159018.5 60 132776.5 61 107909.0 62 86285.0 63 67624.5 64 51912.0 65 38727.5 66 28720.0 67 21796.5 68 16491.0 69 12407.0 70 9408.0 71 6974.5 72 5032.5 73 3456.0 74 2328.0 75 1564.0 76 1018.5 77 612.5 78 369.0 79 215.5 80 133.5 81 82.5 82 57.5 83 44.0 84 32.0 85 21.5 86 13.0 87 9.5 88 5.0 89 3.0 90 3.5 91 3.0 92 1.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.012000817179390543 6 8.027302461130798E-5 7 2.6757674870435995E-5 8 2.6757674870435995E-5 9 0.0 10-11 2.0068256152826995E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.087937921765315E-4 26-27 0.0 28-29 6.626062069067527E-4 30-31 0.0023248979959379274 32-33 1.275782215649631E-4 34-35 6.733387353055605E-5 36-37 2.2311855783195832E-4 38-39 4.6936843755750185E-4 40-41 6.026356681835965E-4 42-43 1.861320842905348E-4 44-45 0.0 46-47 0.0014791891407607604 48-49 4.243751164821283E-5 50-51 0.0020542655647529115 52-53 0.0015961833100053302 54-55 0.002826969872474664 56-57 0.0027639438407558873 58-59 0.0038434149944676214 60-61 0.0030664196164519363 62-63 0.003130809030334386 64-65 0.0046127428194402045 66-67 0.0017357866600436593 68-69 1.4673313729271338E-4 70-71 6.630880196299017E-4 72-73 0.006571618268090192 74-75 0.00560790260862925 76-77 0.0043131712523361 78-79 0.0024825783442094873 80-81 2.4590939959990542E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0018010188303774005 90-91 3.106269625584065E-4 92-93 8.723299724204156E-6 94-95 5.293362097462971E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 43.0 20-21 179.0 22-23 361.0 24-25 614.0 26-27 1829.0 28-29 5116.0 30-31 15561.0 32-33 19211.0 34-35 26669.0 36-37 42070.0 38-39 49717.0 40-41 47753.0 42-43 53569.0 44-45 63146.0 46-47 64090.0 48-49 60524.0 50-51 56361.0 52-53 55201.0 54-55 59294.0 56-57 60436.0 58-59 59877.0 60-61 58987.0 62-63 57625.0 64-65 61265.0 66-67 64154.0 68-69 65119.0 70-71 65161.0 72-73 59938.0 74-75 60235.0 76-77 61626.0 78-79 63093.0 80-81 62276.0 82-83 59668.0 84-85 59437.0 86-87 60856.0 88-89 62827.0 90-91 63065.0 92-93 63131.0 94-95 73261.0 96-97 226301.0 98-99 492511.0 100-101 4892334.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.98554395315585 #Duplication Level Percentage of deduplicated Percentage of total 1 88.72528858169504 74.51641623934385 2 7.766836748008922 13.046040181537787 3 1.9843772889642664 4.9997701806585795 4 0.7127762316471417 2.3945159812706325 5 0.3339686557640244 1.4024269608822924 6 0.1714134003879059 0.8637748603463024 7 0.09828883019082488 0.5778388607667057 8 0.0581115428278234 0.3904423627481489 9 0.03475807669414818 0.26272583801311894 >10 0.11232894323918823 1.3872719974810508 >50 0.0013933299410328582 0.07689756236336728 >100 4.0694073120321614E-4 0.05369514423823499 >500 5.1429908521677694E-5 0.028183830349996695 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.013651230565399E-5 0.0 0.0 0.0 3 0.0 4.013651230565399E-5 0.0 0.0 0.0 4 0.0 9.365186204652597E-5 0.0 0.0 1.3378837435217998E-5 5 0.0 9.365186204652597E-5 0.0 0.0 1.3378837435217998E-5 6 2.6757674870435995E-5 9.365186204652597E-5 0.0 0.0 1.3378837435217998E-5 7 2.6757674870435995E-5 9.365186204652597E-5 0.0 0.0 1.3378837435217998E-5 8 2.6757674870435995E-5 1.0703069948174398E-4 0.0 0.0 2.6757674870435995E-5 9 2.6757674870435995E-5 1.7392488665783396E-4 0.0 0.0 5.351534974087199E-5 10-11 2.6757674870435995E-5 1.7392488665783396E-4 0.0 2.0068256152826995E-5 5.351534974087199E-5 12-13 2.6757674870435995E-5 1.7392488665783396E-4 0.0 2.6757674870435995E-5 5.351534974087199E-5 14-15 2.6757674870435995E-5 2.3412965511631495E-4 0.0 2.6757674870435995E-5 7.358360589369899E-5 16-17 4.013651230565399E-5 2.4081907383392395E-4 0.0 2.6757674870435995E-5 9.365186204652597E-5 18-19 4.013651230565399E-5 2.4750849255153294E-4 0.0 3.3447093588044995E-5 1.0034128076413497E-4 20-21 4.013651230565399E-5 2.5419791126914197E-4 0.0 4.682593102326299E-5 1.0703069948174398E-4 22-23 4.682593102326299E-5 2.9433442357479594E-4 0.0 8.027302461130798E-5 1.4047779306978898E-4 24-25 5.351534974087199E-5 3.679180294684949E-4 0.0 1.1372011819935298E-4 1.6723546794022496E-4 26-27 5.351534974087199E-5 3.879862856213219E-4 0.0 1.5385663050500697E-4 1.7392488665783396E-4 28-29 5.351534974087199E-5 3.9467570433893086E-4 0.0 4.548804727974119E-4 1.8061430537544295E-4 30-31 5.351534974087199E-5 4.749487289502389E-4 0.0 0.0014716721178739797 1.8730372409305195E-4 32-33 5.351534974087199E-5 4.816381476678479E-4 0.0 0.003598907270073641 2.0068256152826994E-4 34-35 5.351534974087199E-5 5.418429161263288E-4 0.0 0.006495425574798337 2.0068256152826994E-4 36-37 5.351534974087199E-5 6.020476845848098E-4 0.0 0.010937199603290712 2.0068256152826994E-4 38-39 5.351534974087199E-5 6.288053594552458E-4 0.0 0.017472761690394703 2.2075081768109696E-4 40-41 5.351534974087199E-5 6.823207091961179E-4 0.0 0.024008323777498695 2.2744023639870595E-4 42-43 5.351534974087199E-5 7.023889653489448E-4 0.0 0.03083822028817748 2.3412965511631495E-4 44-45 5.351534974087199E-5 7.960408273954709E-4 0.0 0.03869828728136805 2.4750849255153294E-4 46-47 5.351534974087199E-5 8.562455958539518E-4 0.0 0.04753500940732955 2.6757674870435996E-4 48-49 5.351534974087199E-5 8.562455958539518E-4 0.0 0.055809820361011876 2.9433442357479594E-4 50-51 7.358360589369899E-5 9.900339702061318E-4 0.0 0.06398429003393007 2.9433442357479594E-4 52-53 8.027302461130798E-5 0.0010034128076413498 0.0 0.07228585866248283 3.144026797276229E-4 54-55 8.027302461130798E-5 0.0010167916450765679 0.0 0.08046701775411864 3.2109209844523193E-4 56-57 8.027302461130798E-5 0.0010368599012293947 0.0 0.08792571962425268 3.344709358804499E-4 58-59 8.027302461130798E-5 0.0010636175760998308 0.0 0.09561186173078541 3.478497733156679E-4 60-61 9.365186204652597E-5 0.0010836858322526579 0.0 0.10313745778809554 3.612286107508859E-4 62-63 1.0703069948174398E-4 0.0011171329258407028 0.0 0.10983356592442214 3.746074481861039E-4 64-65 1.0703069948174398E-4 0.0012509213001928826 0.0 0.11645609045485505 3.746074481861039E-4 66-67 1.0703069948174398E-4 0.0012576107189104916 0.0 0.12279765939914838 3.746074481861039E-4 68-69 1.0703069948174398E-4 0.0012643001376281006 0.0 0.1291325389247241 3.746074481861039E-4 70-71 1.0703069948174398E-4 0.0013111260686513636 0.0 0.13420311831267173 3.879862856213219E-4 72-73 1.0703069948174398E-4 0.0013178154873689726 0.0 0.13826359547426037 4.548804727974119E-4 74-75 1.0703069948174398E-4 0.0013311943248041907 0.0 0.14126714447846683 4.548804727974119E-4 76-77 1.1372011819935298E-4 0.0013646414183922356 0.0 0.14452489139394242 4.548804727974119E-4 78-79 1.2040953691696197E-4 0.0013847096745450626 0.0 0.14657185352153074 4.548804727974119E-4 80-81 1.2040953691696197E-4 0.0013913990932626717 0.0 0.14730768958046775 4.548804727974119E-4 82-83 1.2040953691696197E-4 0.0014114673494154987 0.0 0.1478696007527469 4.548804727974119E-4 84-85 1.2040953691696197E-4 0.0014315356055683256 0.0 0.14807697273299278 4.548804727974119E-4 86-87 1.2040953691696197E-4 0.0014449144430035436 0.0 0.1482308293634978 4.615698915150209E-4 88 1.2040953691696197E-4 0.0014716721178739797 0.0 0.14823751878221542 4.682593102326299E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8330 0.0 49.584694 1 GTATCAA 15885 0.0 38.386337 1 TCAACGC 18935 0.0 31.640959 4 ATCAACG 18920 0.0 31.576021 3 CAACGCA 19155 0.0 31.233097 5 TATCAAC 19860 0.0 30.553186 2 AACGCAG 19835 0.0 30.20204 6 ACGCAGA 22920 0.0 26.02543 7 CGCAGAG 23760 0.0 25.087421 8 GCAGAGT 27860 0.0 21.334316 9 GTACATG 20225 0.0 21.26443 1 TACATGG 20375 0.0 20.543612 2 ACATGGG 20535 0.0 19.740726 3 GAGTACT 16410 0.0 19.485239 12-13 GTGGTAT 4470 0.0 19.337904 1 AGAGTAC 24790 0.0 18.669273 10-11 CAGAGTA 27235 0.0 18.267359 10-11 CATGGGG 16260 0.0 18.095825 4 TGGTATC 4530 0.0 17.67179 2 GTACTTT 18580 0.0 17.255344 14-15 >>END_MODULE