##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138866_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5263681 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.081326546954497 32.0 27.0 33.0 18.0 33.0 2 31.34997941554589 33.0 32.0 33.0 27.0 33.0 3 32.2275899698329 33.0 33.0 33.0 30.0 34.0 4 32.38819202759438 33.0 33.0 33.0 31.0 34.0 5 33.07545841018861 33.0 33.0 34.0 33.0 34.0 6 37.102062985959826 38.0 37.0 38.0 36.0 38.0 7 37.252365597383275 38.0 38.0 38.0 36.0 38.0 8 37.31984271083297 38.0 38.0 38.0 37.0 38.0 9 37.46675396932299 38.0 38.0 38.0 37.0 38.0 10-11 37.531223586687716 38.0 38.0 38.0 37.5 38.0 12-13 37.560705711459335 38.0 38.0 38.0 38.0 38.0 14-15 37.5605193399828 38.0 38.0 38.0 38.0 38.0 16-17 37.55828126742483 38.0 38.0 38.0 38.0 38.0 18-19 37.55704857494214 38.0 38.0 38.0 38.0 38.0 20-21 37.554335405328736 38.0 38.0 38.0 38.0 38.0 22-23 37.56374265355693 38.0 38.0 38.0 38.0 38.0 24-25 37.52329201379698 38.0 38.0 38.0 38.0 38.0 26-27 37.529016907914894 38.0 38.0 38.0 38.0 38.0 28-29 37.52168388857399 38.0 38.0 38.0 38.0 38.0 30-31 37.51241548950698 38.0 38.0 38.0 38.0 38.0 32-33 37.50960053368573 38.0 38.0 38.0 38.0 38.0 34-35 37.493959209500176 38.0 38.0 38.0 38.0 38.0 36-37 37.47290887713787 38.0 38.0 38.0 37.5 38.0 38-39 37.45165873905173 38.0 38.0 38.0 37.0 38.0 40-41 37.43376136695709 38.0 38.0 38.0 37.0 38.0 42-43 37.41521898838698 38.0 38.0 38.0 37.0 38.0 44-45 37.3832696533934 38.0 38.0 38.0 37.0 38.0 46-47 37.35075438907519 38.0 38.0 38.0 37.0 38.0 48-49 37.30980356608865 38.0 38.0 38.0 37.0 38.0 50-51 37.29432722113298 38.0 38.0 38.0 37.0 38.0 52-53 37.2866060399065 38.0 38.0 38.0 37.0 38.0 54-55 37.266480510325096 38.0 38.0 38.0 37.0 38.0 56-57 37.23634303711586 38.0 38.0 38.0 37.0 38.0 58-59 37.24031302137429 38.0 38.0 38.0 37.0 38.0 60-61 37.25449151012883 38.0 38.0 38.0 37.0 38.0 62-63 37.2593456086047 38.0 38.0 38.0 37.0 38.0 64-65 37.267115498001814 38.0 38.0 38.0 37.0 38.0 66-67 37.272344417802174 38.0 38.0 38.0 37.0 38.0 68-69 37.27649583512774 38.0 38.0 38.0 37.0 38.0 70-71 37.2448086292474 38.0 38.0 38.0 37.0 38.0 72-73 37.22776315268737 38.0 38.0 38.0 37.0 38.0 74-75 37.212136508317336 38.0 38.0 38.0 37.0 38.0 76-77 37.21621365467297 38.0 38.0 38.0 37.0 38.0 78-79 37.22027984271918 38.0 38.0 38.0 37.0 38.0 80-81 37.20763258536306 38.0 38.0 38.0 36.5 38.0 82-83 37.207097762671054 38.0 38.0 38.0 36.5 38.0 84-85 37.19934169941244 38.0 38.0 38.0 36.0 38.0 86-87 37.17217675986065 38.0 38.0 38.0 36.0 38.0 88-89 37.1308699921825 38.0 38.0 38.0 36.0 38.0 90-91 37.13541652731212 38.0 38.0 38.0 36.0 38.0 92-93 37.11428795421924 38.0 38.0 38.0 36.0 38.0 94-95 37.096097648567365 38.0 38.0 38.0 36.0 38.0 96-97 37.083455032810576 38.0 38.0 38.0 36.0 38.0 98-99 37.12207126240132 38.0 38.0 38.0 36.0 38.0 100 35.527602248513574 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 22.0 20 46.0 21 132.0 22 345.0 23 860.0 24 1850.0 25 3584.0 26 6139.0 27 10159.0 28 15542.0 29 23101.0 30 31952.0 31 42731.0 32 54547.0 33 72904.0 34 106261.0 35 192242.0 36 598318.0 37 4102944.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.024731551931055 20.251094243743115 14.245506139144831 24.478668065181004 2 13.836115828447811 20.992153589854702 43.51745480016741 21.654275781530075 3 17.67711607143366 27.426149115039454 30.56290835253884 24.333826460988043 4 11.979050402180528 18.539915317816565 39.578139328732114 29.902894951270792 5 12.770025502012686 38.283419283716825 35.69736471602173 13.249190498248756 6 28.68521097688101 38.50919157144971 19.486306256021212 13.319291195648065 7 25.743914095065445 33.39821824241182 23.712046270298778 17.145821392223954 8 23.8900921028634 36.98978661316797 21.70323803878655 17.416883245182078 9 25.800176720435758 17.02046533595026 21.87896644952458 35.3003914940894 10-11 23.86313831067586 27.276786825336423 29.062372534495363 19.797702329492356 12-13 24.808342298858914 24.980408197229277 29.36704370952571 20.844205794386095 14-15 21.94086229769623 26.12466446959837 27.38820988581945 24.54626334688595 16-17 21.00799801507728 29.318722012219204 28.052896822584806 21.62038315011871 18-19 21.065115838136848 28.323068970175054 30.140304855100453 20.47151033658765 20-21 22.149001202152853 27.356958823129222 29.879902535542946 20.614137439174982 22-23 21.890091515950708 27.23307150706581 29.75122861157055 21.12560836541293 24-25 21.543194588964877 27.391088372349493 29.870642263325443 21.195074775360187 26-27 21.363607142558262 27.619793279373354 29.753825039123395 21.26277453894499 28-29 21.25631426544426 27.685066210344587 29.791124936438678 21.267494587772475 30-31 21.59579452097475 27.532626392044946 29.7104474105027 21.161131676477602 32-33 21.39159229997186 27.617872465238612 29.611630774316488 21.378904460473034 34-35 21.529809440405568 27.69967415204844 29.736334107956473 21.034182299589514 36-37 21.43215068814982 27.656894709829565 29.62655987918182 21.284394722838794 38-39 21.324677150368153 27.681915469307416 29.66703125130457 21.326376129019856 40-41 21.481380971792934 27.59230803269515 29.60648303154973 21.319827963962183 42-43 21.514663264761207 27.604719591052746 29.342974434479117 21.53764270970693 44-45 21.49591583459078 27.77356055131624 29.254270452543444 21.47625316154954 46-47 21.547589093166657 27.827141163810587 28.99372085100088 21.631548892021872 48-49 21.60631877775788 27.967850724417115 28.806615174202182 21.619215323622825 50-51 21.509144854889044 28.11239581363963 28.619681617079934 21.758777714391393 52-53 21.67124763130376 28.073504861631456 28.47085069196 21.784396815104788 54-55 21.640023259160397 28.056025628834625 28.468677972548466 21.835273139456508 56-57 21.776875522387108 28.050406174230634 28.344493522134346 21.82822478124791 58-59 21.663881070849055 28.14295841541962 28.476403730527426 21.71675678320389 60-61 21.78947533914537 28.15449512974076 28.40791016625618 21.648119364857692 62-63 21.696726410775522 28.193141008373406 28.339714234790808 21.770418346060264 64-65 21.577261180279038 28.15627553952312 28.439351961302563 21.827111318895284 66-67 21.677891926429137 28.216218756608992 28.25725184604143 21.848637470920444 68-69 21.656923019622276 28.126922771696165 28.35422233447451 21.86193187420705 70-71 21.68676921187391 27.95899016618226 28.34786545936825 22.00637516257558 72-73 21.788809730354696 28.015303622563824 28.334531030323184 21.861355616758296 74-75 21.737991398435796 28.050392211494717 28.27474414912066 21.936872240948823 76-77 21.789601511998736 27.969439987957113 28.146930337941672 22.09402816210248 78-79 21.7686669376126 28.016473097023546 28.175311053167 22.03954891219685 80-81 21.777760082213163 28.081934456464886 28.13499282662003 22.00531263470192 82-83 21.82221054703521 28.03614726364443 28.242516296592452 21.89912589272791 84-85 21.989767339775547 28.065370509819733 28.061331334542267 21.88353081586245 86-87 21.782481298889902 28.154511196529107 28.13796732661119 21.9250401779698 88-89 21.923604176891704 28.068334561079872 28.080652322158826 21.927408939869604 90-91 22.01993394022396 28.024606460968336 28.103736405381458 21.85172319342625 92-93 21.975737215671312 28.096679261858558 28.041589986939965 21.885993535530165 94-95 21.787256919438878 28.233538304750045 28.075179762278307 21.90402501353277 96-97 21.95750687600036 28.299340170302322 28.111034542965065 21.63211841073225 98-99 22.918772261216866 30.240795792760704 28.353050411128226 18.487381534894205 100 28.988780256381414 41.25004279544754 29.761176948171048 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1747.0 1 1439.5 2 1354.5 3 2012.5 4 3133.5 5 4355.0 6 5092.0 7 5238.5 8 4893.0 9 4688.5 10 4877.5 11 5730.0 12 7476.5 13 11238.0 14 16963.0 15 22988.5 16 27807.5 17 29657.5 18 29124.5 19 26377.0 20 23598.0 21 22119.5 22 22435.5 23 25887.5 24 31893.5 25 40517.5 26 51489.0 27 63707.0 28 76870.5 29 91560.5 30 105834.0 31 119323.0 32 133810.0 33 148511.5 34 161192.0 35 172911.0 36 185288.5 37 195947.5 38 204209.0 39 209761.0 40 214269.0 41 217680.5 42 218740.0 43 220685.0 44 222691.0 45 223548.0 46 223384.0 47 222045.0 48 218170.0 49 211655.0 50 204980.5 51 196588.5 52 187039.5 53 176924.0 54 165034.0 55 150816.5 56 134645.0 57 118493.5 58 103532.0 59 89037.5 60 74963.0 61 61361.0 62 48417.5 63 37744.0 64 29118.5 65 21922.0 66 15839.5 67 11545.0 68 8548.5 69 6189.0 70 4427.0 71 3124.0 72 2217.0 73 1520.0 74 1016.0 75 665.0 76 418.0 77 248.5 78 173.5 79 118.0 80 72.0 81 51.5 82 37.0 83 29.5 84 27.0 85 21.0 86 12.0 87 7.0 88 6.0 89 4.5 90 2.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.010771929377939127 6 0.0 7 3.799622355534084E-5 8 1.899811177767042E-5 9 0.0 10-11 3.799622355534084E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.038713481448693E-4 26-27 0.0 28-29 6.089670396589784E-4 30-31 0.002248583368658006 32-33 2.3885182970055625E-4 34-35 4.79385328296975E-5 36-37 3.18002435898659E-4 38-39 5.533785556877947E-4 40-41 6.265499769547087E-4 42-43 2.270300832627895E-4 44-45 0.0 46-47 0.0014107304389376918 48-49 3.056052588552944E-5 50-51 0.001907053117408189 52-53 0.0013132470460540105 54-55 0.002482374092092713 56-57 0.002304556852302438 58-59 0.0036050322387518436 60-61 0.002623858878894492 62-63 0.00282622000413855 64-65 0.004050741850206222 66-67 0.0016672561741349486 68-69 6.792491534574405E-5 70-71 6.75961558180756E-4 72-73 0.006759052754116907 74-75 0.0060245532190160685 76-77 0.00469366098563799 78-79 0.002434376757578047 80-81 3.641616392129253E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0020995742826836273 90-91 2.964625062579368E-4 92-93 0.0 94-95 7.937102169289394E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 757.0 20-21 1998.0 22-23 1304.0 24-25 1450.0 26-27 2354.0 28-29 4784.0 30-31 13751.0 32-33 17161.0 34-35 23139.0 36-37 35917.0 38-39 43577.0 40-41 41322.0 42-43 46122.0 44-45 54064.0 46-47 54625.0 48-49 51564.0 50-51 62015.0 52-53 42998.0 54-55 45541.0 56-57 46745.0 58-59 48813.0 60-61 47662.0 62-63 46540.0 64-65 48378.0 66-67 51279.0 68-69 52445.0 70-71 52623.0 72-73 47297.0 74-75 47096.0 76-77 48498.0 78-79 50097.0 80-81 50262.0 82-83 47114.0 84-85 45449.0 86-87 47402.0 88-89 49476.0 90-91 50500.0 92-93 49496.0 94-95 52769.0 96-97 149305.0 98-99 1136460.0 100-101 2453532.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.56197414502782 #Duplication Level Percentage of deduplicated Percentage of total 1 89.08675510964953 75.33351882246609 2 7.568737821127053 12.8005482388128 3 1.9334848718968252 4.904978932414252 4 0.70022168630114 2.368485125311391 5 0.3017352700263327 1.2757665051304865 6 0.15525234190784415 0.7877066713419681 7 0.08590835529501162 0.5085206083509045 8 0.04561503399263513 0.3085837860087821 9 0.03338916697685772 0.25411084871589534 >10 0.085925317195181 1.1060109940962004 >50 0.0016454333163444714 0.09323825604453757 >100 0.0012940129423791278 0.22624826800272396 >500 0.0 0.0 >1k 3.557937281519975E-5 0.03228294330394179 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.8998111777670416E-5 0.0 5 0.0 0.0 0.0 1.8998111777670416E-5 0.0 6 0.0 0.0 0.0 1.8998111777670416E-5 0.0 7 0.0 0.0 0.0 1.8998111777670416E-5 0.0 8 0.0 0.0 0.0 1.8998111777670416E-5 0.0 9 0.0 3.799622355534083E-5 0.0 1.8998111777670416E-5 0.0 10-11 2.8497167666505627E-5 3.799622355534083E-5 0.0 1.8998111777670416E-5 0.0 12-13 5.6994335333011254E-5 3.799622355534083E-5 0.0 2.8497167666505624E-5 0.0 14-15 5.6994335333011254E-5 1.1398867066602251E-4 0.0 5.6994335333011254E-5 0.0 16-17 5.6994335333011254E-5 1.1398867066602251E-4 0.0 5.6994335333011254E-5 0.0 18-19 5.6994335333011254E-5 1.1398867066602251E-4 0.0 5.6994335333011254E-5 0.0 20-21 5.6994335333011254E-5 1.6148395011019855E-4 0.0 6.649339122184647E-5 0.0 22-23 9.499055888835209E-5 1.8998111777670417E-4 0.0 9.499055888835209E-5 0.0 24-25 1.5198489422136333E-4 2.089792295543746E-4 0.0 1.3298678244369293E-4 0.0 26-27 1.7098300599903375E-4 2.089792295543746E-4 0.0 2.7547262077622103E-4 0.0 28-29 1.8998111777670417E-4 2.089792295543746E-4 0.0 6.554348563296295E-4 0.0 30-31 1.8998111777670417E-4 2.8497167666505626E-4 0.0 0.0019093102336558768 0.0 32-33 1.8998111777670417E-4 3.0396978844272665E-4 0.0 0.004958507173971978 0.0 34-35 1.8998111777670417E-4 3.609641237757379E-4 0.0 0.00906209931794879 0.0 36-37 2.469754531097154E-4 4.179584591087492E-4 0.0 0.015407468651690709 0.0 38-39 2.469754531097154E-4 4.179584591087492E-4 0.0 0.03027349111771781 0.0 40-41 2.469754531097154E-4 4.5595468266409003E-4 0.0 0.045319995645632785 0.0 42-43 2.469754531097154E-4 4.749527944417604E-4 0.0 0.05516101754646606 0.0 44-45 2.469754531097154E-4 5.319471297747717E-4 0.0 0.06713932702228725 0.0 46-47 2.469754531097154E-4 5.699433533301125E-4 0.0 0.08065648355209976 0.0 48-49 2.6597356488738586E-4 5.88941465107783E-4 0.0 0.09325223166069524 0.0 50-51 3.0396978844272665E-4 6.934310798849702E-4 0.0 0.10590497410462374 0.0 52-53 3.0396978844272665E-4 7.029301357738054E-4 0.0 0.1347916030625716 0.0 54-55 3.134688443315619E-4 7.029301357738054E-4 0.0 0.16909269387715553 0.0 56-57 3.229679002203971E-4 7.219282475514759E-4 0.0 0.22030210417386614 0.0 58-59 3.4196601199806755E-4 7.219282475514759E-4 0.0 0.25950470782708907 0.0 60-61 3.7046317966457317E-4 7.314273034403111E-4 0.0 0.27669799898588077 0.0 62-63 3.7996223555340834E-4 7.599244711068167E-4 0.0 0.2906141158630244 0.0 64-65 3.8946129144224357E-4 8.739131417728392E-4 0.0 0.2973014512087644 0.0 66-67 3.989603473310788E-4 8.929112535505096E-4 0.0 0.30374181110139464 0.0 68-69 3.989603473310788E-4 9.119093653281801E-4 0.0 0.30994469459680407 0.0 70-71 3.989603473310788E-4 9.119093653281801E-4 0.0 0.3160145913097697 0.0 72-73 3.989603473310788E-4 9.119093653281801E-4 0.0 0.3208591098130757 0.0 74-75 3.989603473310788E-4 9.214084212170152E-4 0.0 0.3245162463302772 0.0 76-77 3.989603473310788E-4 9.689037006611913E-4 0.0 0.32838236207703314 0.0 78-79 3.989603473310788E-4 9.879018124388616E-4 0.0 0.33080462132868615 0.0 80-81 3.989603473310788E-4 9.879018124388616E-4 0.0 0.3314410580732381 0.0 82-83 3.989603473310788E-4 9.97400868327697E-4 0.0 0.3318400184205692 0.0 84-85 3.989603473310788E-4 0.0010353970918830378 0.0 0.3320299995383459 0.0 86-87 3.989603473310788E-4 0.0011113895389937194 0.0 0.3320964929295677 0.0 88 3.989603473310788E-4 0.001139886706660225 0.0 0.33210599198545654 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8140 0.0 52.134686 1 GTATCAA 15450 0.0 37.4241 1 ATCAACG 19000 0.0 30.36588 3 TCAACGC 19195 0.0 30.079115 4 CAACGCA 19485 0.0 29.588652 5 TATCAAC 19960 0.0 29.30222 2 AACGCAG 20170 0.0 28.685486 6 ACGCAGA 22985 0.0 25.154205 7 CGCAGAG 23270 0.0 24.846127 8 CCGAACC 845 0.0 23.185678 9 GGACCGA 1020 0.0 22.477146 6 GTACATG 22375 0.0 22.115208 1 ACCGAAC 890 0.0 22.013367 8 TGGTATC 3810 0.0 21.992493 2 TACATGG 22490 0.0 21.798231 2 GTGGTAT 3930 0.0 21.745264 1 GCAGAGT 26850 0.0 21.548836 9 ACATGGG 22815 0.0 21.15882 3 GAGTACT 13620 0.0 20.29154 12-13 AGGACCG 1275 0.0 19.290577 5 >>END_MODULE