##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138864_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4986368 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.56338862274104 32.0 25.0 33.0 18.0 33.0 2 31.142901005300853 33.0 32.0 33.0 27.0 33.0 3 32.05636286772256 33.0 31.0 33.0 29.0 34.0 4 32.23707175242581 33.0 33.0 33.0 31.0 34.0 5 33.020908805768045 33.0 33.0 34.0 33.0 34.0 6 36.95611194360304 38.0 37.0 38.0 35.0 38.0 7 37.08593489289198 38.0 38.0 38.0 36.0 38.0 8 37.14995363358661 38.0 38.0 38.0 36.0 38.0 9 37.34585694437314 38.0 38.0 38.0 37.0 38.0 10-11 37.427290665269794 38.0 38.0 38.0 37.0 38.0 12-13 37.47024106524027 38.0 38.0 38.0 37.0 38.0 14-15 37.47175729910027 38.0 38.0 38.0 37.0 38.0 16-17 37.470503781509905 38.0 38.0 38.0 37.0 38.0 18-19 37.47006368162157 38.0 38.0 38.0 37.0 38.0 20-21 37.46953368006299 38.0 38.0 38.0 37.0 38.0 22-23 37.483355064198136 38.0 38.0 38.0 37.0 38.0 24-25 37.44484475062094 38.0 38.0 38.0 37.0 38.0 26-27 37.454001937093565 38.0 38.0 38.0 37.0 38.0 28-29 37.44693951603003 38.0 38.0 38.0 37.0 38.0 30-31 37.44093607177847 38.0 38.0 38.0 37.0 38.0 32-33 37.43826161719801 38.0 38.0 38.0 37.0 38.0 34-35 37.42589636744853 38.0 38.0 38.0 37.0 38.0 36-37 37.402370323420016 38.0 38.0 38.0 37.0 38.0 38-39 37.38073763642305 38.0 38.0 38.0 37.0 38.0 40-41 37.3625675177226 38.0 38.0 38.0 37.0 38.0 42-43 37.34337227529848 38.0 38.0 38.0 37.0 38.0 44-45 37.31195732195148 38.0 38.0 38.0 37.0 38.0 46-47 37.27510492131559 38.0 38.0 38.0 37.0 38.0 48-49 37.23026885076749 38.0 38.0 38.0 37.0 38.0 50-51 37.20940275229022 38.0 38.0 38.0 37.0 38.0 52-53 37.19555798400928 38.0 38.0 38.0 37.0 38.0 54-55 37.17140932835662 38.0 38.0 38.0 37.0 38.0 56-57 37.13513125157161 38.0 38.0 38.0 36.5 38.0 58-59 37.13688817135491 38.0 38.0 38.0 36.0 38.0 60-61 37.14780302777133 38.0 38.0 38.0 36.0 38.0 62-63 37.15423266285845 38.0 38.0 38.0 36.0 38.0 64-65 37.15880052093472 38.0 38.0 38.0 36.0 38.0 66-67 37.16052999352678 38.0 38.0 38.0 36.0 38.0 68-69 37.16029950021506 38.0 38.0 38.0 36.0 38.0 70-71 37.12471063294889 38.0 38.0 38.0 36.0 38.0 72-73 37.09528425832569 38.0 38.0 38.0 36.0 38.0 74-75 37.07458671639584 38.0 38.0 38.0 36.0 38.0 76-77 37.07229549837423 38.0 38.0 38.0 36.0 38.0 78-79 37.0721367676735 38.0 38.0 38.0 36.0 38.0 80-81 37.057986850985166 38.0 38.0 38.0 36.0 38.0 82-83 37.0550366355217 38.0 38.0 38.0 36.0 38.0 84-85 37.043488351758924 38.0 38.0 38.0 36.0 38.0 86-87 37.006890089249 38.0 38.0 38.0 36.0 38.0 88-89 36.961437110328916 38.0 38.0 38.0 36.0 38.0 90-91 36.964643088862914 38.0 38.0 38.0 36.0 38.0 92-93 36.93655835589328 38.0 38.0 38.0 35.5 38.0 94-95 36.91414894776038 38.0 38.0 38.0 35.0 38.0 96-97 36.89728569755028 38.0 38.0 38.0 35.0 38.0 98-99 36.937639027774004 38.0 38.0 38.0 35.0 38.0 100 35.211523527758324 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 15.0 20 35.0 21 142.0 22 350.0 23 903.0 24 2103.0 25 3848.0 26 6632.0 27 10811.0 28 16837.0 29 25130.0 30 35217.0 31 47222.0 32 62811.0 33 83756.0 34 123907.0 35 218130.0 36 628800.0 37 3719714.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.99621207259472 19.39491830526748 14.185495334479924 25.423374287657868 2 14.0293496188007 20.288013239295616 43.08659128247253 22.59604585943115 3 18.177960391210597 25.88318792355478 30.034887116233698 25.903964569000927 4 12.363969125423555 17.933734533833043 38.54143938032652 31.160856960416883 5 13.562485559149723 37.314074052680226 35.37344439951735 13.7499959886527 6 30.224462108168975 37.53674269733563 18.739302076763334 13.499493117732056 7 26.775661162593696 32.446000776517096 22.875688276517096 17.902649784372112 8 24.182491143854605 37.10526379120033 21.0036042265633 17.708640838381765 9 25.482916623883355 17.159042413235444 21.327166386435977 36.03087457644522 10-11 24.337999990774847 26.746928174360214 28.672648844338976 20.24242299052597 12-13 25.114030893828936 24.2348338510114 28.914181624781804 21.73695363037786 14-15 22.164218525387618 25.554411547643497 26.719798859610844 25.561571067358045 16-17 21.76285424581579 28.73714896293254 27.335677992478697 22.164318798772975 18-19 21.78939661092001 27.815375840692063 29.204904250949788 21.190323297438134 20-21 22.556350943085565 26.96396148781912 29.15097581512292 21.328711753972396 22-23 22.30458779847424 26.82055761619912 29.022998908080076 21.85185567724656 24-25 22.042803123103077 26.93991796223511 29.112365343331447 21.904913571330365 26-27 21.99747165642609 27.12091269091075 29.000542074455254 21.881073578207904 28-29 21.882202250788957 27.207285781097923 29.04256499493692 21.867946973176203 30-31 22.189087165959677 27.01731479332052 28.962839381917465 21.830758658802342 32-33 22.005934973603843 27.15670384348939 28.933182409052883 21.90417877385389 34-35 22.115833809688073 27.166397323311546 28.952916657297546 21.764852209702834 36-37 22.10215785957428 27.060484792330886 28.92812754441899 21.909229803675846 38-39 21.899985889662858 27.191311450543676 29.0459001026789 21.862802557114566 40-41 22.1563924425794 27.050254798492624 28.91814267794684 21.875210080981134 42-43 22.08533830136535 27.159791877885226 28.7310829657916 22.023786854957823 44-45 22.128163709141997 27.234757100474035 28.654084965863873 21.982994224520098 46-47 22.174593310853137 27.223266041795778 28.442926030571 22.159214616780076 48-49 22.096971110065713 27.30326106084392 28.44643371855422 22.153334110536143 50-51 22.08720560166279 27.475554487742066 28.324628931864137 22.11261097873101 52-53 22.256288425318317 27.35464345653405 28.240495331663407 22.148572786484223 54-55 22.189263686004374 27.259352302905548 28.297777488032406 22.25360652305767 56-57 22.232245618978467 27.3850313742915 28.216531379710208 22.16619162701982 58-59 22.160226794388052 27.378654198193903 28.21191839265812 22.24920061475993 60-61 22.341229625829868 27.296654323704477 28.40176155433123 21.960354496134425 62-63 22.09227641373009 27.343560567487774 28.344325360009194 22.21983765877295 64-65 22.094663376976193 27.33880564977368 28.300079418875836 22.26645155437429 66-67 22.141570590003905 27.4048538969706 28.319468133832004 22.13410737919349 68-69 22.106074598832322 27.542690678338538 28.233104310684777 22.118130412144367 70-71 22.175316243370187 27.307661800350996 28.047607018674782 22.469414937604036 72-73 22.196098605436994 27.313099901697633 27.98415704538968 22.506644447475686 74-75 22.0694410114133 27.48993639761358 28.16169743659156 22.278925154381565 76-77 22.287168300214518 27.184474917284714 28.00225736154009 22.52609942096068 78-79 22.20653813143189 27.249609696183192 27.811189476228048 22.73266269615687 80-81 22.407775390068828 27.449538618103436 27.798721601501686 22.343964390326057 82-83 22.48243562548456 27.260733234028113 27.80258260430099 22.454248536186338 84-85 22.33779564082356 27.28489221525133 27.72616145860952 22.65115068531559 86-87 22.179809269641083 27.493003338912946 27.825024921299864 22.502162470146104 88-89 22.492353805810264 27.528546867929105 27.713995329574935 22.2651039966857 90-91 22.55222975511041 27.539935421039395 27.654657454956833 22.253177368893358 92-93 22.364980917601997 27.285827541133635 27.70164215290698 22.647549388357394 94-95 22.45828613121868 27.600378896974586 27.660336783087878 22.280998188718854 96-97 22.773045208541625 27.463479312143633 27.746485003569727 22.01699047574501 98-99 23.48493250293994 29.522133920311262 28.06102109076151 18.931912485987286 100 22.32344057436601 30.35844874488449 22.11087012448726 25.20724055626224 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1198.0 1 1059.0 2 1365.0 3 1937.5 4 2310.5 5 2951.0 6 3661.5 7 4928.5 8 6696.0 9 7756.5 10 7744.0 11 7671.0 12 8334.0 13 9731.0 14 12346.0 15 15118.5 16 17077.0 17 18109.0 18 17614.5 19 16359.0 20 15235.5 21 14653.0 22 15566.5 23 18157.5 24 22732.5 25 29854.0 26 38902.0 27 48502.0 28 58185.0 29 69450.5 30 80764.5 31 91323.5 32 102824.0 33 113844.0 34 124475.5 35 135510.0 36 147350.0 37 157530.5 38 165093.5 39 171500.0 40 178500.0 41 185466.0 42 190034.0 43 194685.5 44 198431.5 45 202339.0 46 205670.5 47 206759.5 48 206397.0 49 203672.5 50 200668.0 51 195880.0 52 187315.5 53 177805.0 54 169128.0 55 158573.0 56 145897.5 57 132411.5 58 118694.5 59 103902.0 60 87145.5 61 71127.0 62 56554.5 63 43713.0 64 33214.0 65 24743.0 66 18516.0 67 14342.0 68 10892.5 69 7892.0 70 5731.5 71 4142.0 72 2918.0 73 1961.5 74 1289.5 75 854.5 76 541.0 77 339.0 78 223.0 79 137.5 80 84.0 81 51.0 82 35.0 83 22.5 84 17.0 85 17.5 86 13.0 87 8.0 88 4.5 89 3.0 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.010267994660642776 6 6.016403121470377E-5 7 0.0 8 0.0 9 0.0 10-11 2.005467707156792E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.61583384352181E-4 26-27 0.0 28-29 6.921937697143557E-4 30-31 0.0024096830704502976 32-33 1.5088381704673296E-4 34-35 5.0416775314817474E-5 36-37 2.6310601917759537E-4 38-39 5.1883450644189E-4 40-41 5.934672556999716E-4 42-43 1.7497872207275264E-4 44-45 0.0 46-47 0.0013894958501609463 48-49 1.0531192285775276E-4 50-51 0.002122375761959428 52-53 0.0016027266012333943 54-55 0.002969084727996339 56-57 0.0027201150120980096 58-59 0.0038592717641396253 60-61 0.002972841719654005 62-63 0.002974166105739676 64-65 0.0045357867444697116 66-67 0.0017084166607939843 68-69 1.7011937162894289E-4 70-71 6.180669909076623E-4 72-73 0.006559990594267008 74-75 0.005486077534931812 76-77 0.004429458696648815 78-79 0.0025256756271234797 80-81 2.3939592746830066E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0018379339635294293 90-91 2.1321421431439965E-4 92-93 0.0 94-95 1.0240448285864162E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 113.0 22-23 246.0 24-25 357.0 26-27 964.0 28-29 2671.0 30-31 8769.0 32-33 11141.0 34-35 15480.0 36-37 24656.0 38-39 28422.0 40-41 28309.0 42-43 31717.0 44-45 37715.0 46-47 38618.0 48-49 36990.0 50-51 32931.0 52-53 31106.0 54-55 33688.0 56-57 35257.0 58-59 20069.0 60-61 36003.0 62-63 35423.0 64-65 37366.0 66-67 39629.0 68-69 40191.0 70-71 40054.0 72-73 36784.0 74-75 36630.0 76-77 38481.0 78-79 39469.0 80-81 39342.0 82-83 37097.0 84-85 36679.0 86-87 37823.0 88-89 39460.0 90-91 40035.0 92-93 39735.0 94-95 46960.0 96-97 170099.0 98-99 341439.0 100-101 3358416.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.36755665901076 #Duplication Level Percentage of deduplicated Percentage of total 1 91.51023849801896 80.86536185353279 2 6.339517347011037 11.204153167055587 3 1.3007767337365992 3.448393851575756 4 0.42767858324524166 1.5117164574707738 5 0.1768307245859663 0.7813049536952152 6 0.08155106468209479 0.4323880997338598 7 0.04731469809934398 0.29267589855684367 8 0.030362030136684953 0.21464147347088802 9 0.018568794197255753 0.14767910759839573 >10 0.06496819134249195 0.8856693375245589 >50 0.0016087807875793776 0.09790928505661464 >100 5.20690772263874E-4 0.08097260559896743 >500 6.386338435808667E-5 0.03713390912976554 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.005467707156792E-5 0.0 0.0 0.0 3 0.0 2.005467707156792E-5 0.0 0.0 0.0 4 0.0 2.005467707156792E-5 0.0 2.005467707156792E-5 0.0 5 0.0 6.016403121470377E-5 0.0 2.005467707156792E-5 0.0 6 4.010935414313584E-5 6.016403121470377E-5 0.0 2.005467707156792E-5 0.0 7 4.010935414313584E-5 6.016403121470377E-5 0.0 4.010935414313584E-5 0.0 8 4.010935414313584E-5 6.016403121470377E-5 0.0 4.010935414313584E-5 0.0 9 4.010935414313584E-5 1.0027338535783961E-4 0.0 4.010935414313584E-5 0.0 10-11 4.010935414313584E-5 1.0027338535783961E-4 0.0 8.021870828627168E-5 0.0 12-13 4.010935414313584E-5 1.0027338535783961E-4 0.0 1.0027338535783961E-4 0.0 14-15 4.010935414313584E-5 1.7046475510832732E-4 0.0 1.0027338535783961E-4 1.002733853578396E-5 16-17 6.016403121470377E-5 1.804920936441113E-4 0.0 1.2032806242940754E-4 2.005467707156792E-5 18-19 6.016403121470377E-5 2.1057410925146318E-4 0.0 1.4038273950097547E-4 2.005467707156792E-5 20-21 6.016403121470377E-5 2.2060144778724715E-4 0.0 1.7046475510832735E-4 2.005467707156792E-5 22-23 6.016403121470377E-5 2.2060144778724715E-4 0.0 2.4065612485881508E-4 3.0082015607351882E-5 24-25 6.016403121470377E-5 2.2060144778724715E-4 0.0 2.8076547900195094E-4 4.010935414313584E-5 26-27 6.016403121470377E-5 2.2060144778724715E-4 0.0 2.907928175377349E-4 4.010935414313584E-5 28-29 6.016403121470377E-5 2.2060144778724715E-4 0.0 5.715582965396858E-4 5.0136692678919806E-5 30-31 6.016403121470377E-5 2.8076547900195094E-4 0.0 0.001313581348187699 6.016403121470377E-5 32-33 6.016403121470377E-5 2.8076547900195094E-4 0.0 0.003158611638771948 6.016403121470377E-5 34-35 6.016403121470377E-5 3.3090217168087074E-4 0.0 0.005284407408358147 8.021870828627168E-5 36-37 6.016403121470377E-5 3.8103886435979055E-4 0.0 0.008773921218810966 8.021870828627168E-5 38-39 6.016403121470377E-5 3.8103886435979055E-4 0.0 0.018711013707772874 8.021870828627168E-5 40-41 6.016403121470377E-5 3.8103886435979055E-4 0.0 0.02898903570695143 8.021870828627168E-5 42-43 6.016403121470377E-5 4.0109354143135845E-4 0.0 0.03490516544306397 9.024604682205565E-5 44-45 6.016403121470377E-5 4.712849111818462E-4 0.0 0.04231536862100832 1.1030072389362358E-4 46-47 6.016403121470377E-5 5.21421603860766E-4 0.0 0.05019685671013451 1.2032806242940754E-4 48-49 6.016403121470377E-5 5.21421603860766E-4 0.0 0.05786777069000924 1.4038273950097547E-4 50-51 6.016403121470377E-5 5.615309580039019E-4 0.0 0.06626065304446041 1.4038273950097547E-4 52-53 6.016403121470377E-5 5.615309580039019E-4 0.0 0.08960429715576548 1.4038273950097547E-4 54-55 6.016403121470377E-5 5.615309580039019E-4 0.0 0.11893426237293356 1.4038273950097547E-4 56-57 6.016403121470377E-5 5.815856350754698E-4 0.0 0.1546616695759318 1.4038273950097547E-4 58-59 6.016403121470377E-5 5.815856350754698E-4 0.0 0.3413606857736934 1.4038273950097547E-4 60-61 6.016403121470377E-5 5.815856350754698E-4 0.0 0.5137807718964986 1.4038273950097547E-4 62-63 6.016403121470377E-5 5.815856350754698E-4 0.0 0.5198573390491836 1.6043741657254337E-4 64-65 6.016403121470377E-5 6.216949892186056E-4 0.0 0.5258035508009036 1.6043741657254337E-4 66-67 6.016403121470377E-5 6.216949892186056E-4 0.0 0.5311581495790122 1.6043741657254337E-4 68-69 6.016403121470377E-5 6.417496662901735E-4 0.0 0.536322228924941 1.6043741657254337E-4 70-71 6.016403121470377E-5 6.417496662901735E-4 0.0 0.5411854881147962 1.6043741657254337E-4 72-73 6.016403121470377E-5 6.417496662901735E-4 0.0 0.544765247972071 1.804920936441113E-4 74-75 6.016403121470377E-5 6.417496662901735E-4 0.0 0.5476130121162337 1.804920936441113E-4 76-77 6.016403121470377E-5 6.517770048259574E-4 0.0 0.5507916784320772 1.804920936441113E-4 78-79 6.016403121470377E-5 6.618043433617415E-4 0.0 0.552656763399733 1.804920936441113E-4 80-81 6.016403121470377E-5 6.618043433617415E-4 0.0 0.5532383490348085 2.0054677071567923E-4 82-83 6.016403121470377E-5 6.618043433617415E-4 0.0 0.5538299620084197 2.2060144778724715E-4 84-85 6.016403121470377E-5 6.618043433617415E-4 0.0 0.5540806454718143 2.2060144778724715E-4 86-87 6.016403121470377E-5 6.618043433617415E-4 0.0 0.5542110008727795 2.2060144778724715E-4 88 6.016403121470377E-5 7.019136975048773E-4 0.0 0.5542110008727795 2.2060144778724715E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6300 0.0 47.65203 1 GTATCAA 11195 0.0 37.43501 1 TCAACGC 13535 0.0 30.994877 4 ATCAACG 13575 0.0 30.84009 3 CAACGCA 13960 0.0 30.112972 5 TATCAAC 14220 0.0 29.68354 2 AACGCAG 14440 0.0 29.198542 6 CGAGACC 3510 0.0 27.245346 86-87 ACGAGAC 3645 0.0 26.012653 86-87 GAGACCG 3715 0.0 25.710403 88-89 ACGCAGA 16485 0.0 25.654774 7 AGACCGA 3805 0.0 25.53507 88-89 GACCGAG 3875 0.0 25.310783 90-91 CGCAGAG 16705 0.0 25.188005 8 ACCGAGG 4035 0.0 24.652405 90-91 TCTCCGA 3640 0.0 24.649162 74-75 CCCACGA 3840 0.0 24.640957 82-83 ATCTCCG 3590 0.0 24.419575 74-75 CACGAGA 3930 0.0 24.234735 84-85 TGGTATC 2970 0.0 24.21861 2 >>END_MODULE