##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138862_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5904403 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.810561541954367 30.0 18.0 32.0 18.0 33.0 2 28.812053818142157 32.0 27.0 32.0 18.0 33.0 3 31.220936138674816 33.0 30.0 33.0 27.0 33.0 4 31.70822824932512 33.0 31.0 33.0 29.0 33.0 5 32.90933562631142 33.0 33.0 33.0 32.0 34.0 6 36.98520206022523 38.0 37.0 38.0 35.0 38.0 7 37.377929487536676 38.0 38.0 38.0 37.0 38.0 8 37.50295449006445 38.0 38.0 38.0 37.0 38.0 9 37.499993310077244 38.0 38.0 38.0 37.0 38.0 10-11 37.533001050233196 38.0 38.0 38.0 37.0 38.0 12-13 37.545817333268076 38.0 38.0 38.0 37.5 38.0 14-15 37.56705741461076 38.0 38.0 38.0 38.0 38.0 16-17 37.57090810027703 38.0 38.0 38.0 38.0 38.0 18-19 37.56625868864303 38.0 38.0 38.0 38.0 38.0 20-21 37.56270885994206 38.0 38.0 38.0 38.0 38.0 22-23 37.562888796985774 38.0 38.0 38.0 38.0 38.0 24-25 37.526306448724114 38.0 38.0 38.0 38.0 38.0 26-27 37.530913090429294 38.0 38.0 38.0 38.0 38.0 28-29 37.52256169919528 38.0 38.0 38.0 38.0 38.0 30-31 37.515821827769486 38.0 38.0 38.0 38.0 38.0 32-33 37.51246354878694 38.0 38.0 38.0 38.0 38.0 34-35 37.49545762756043 38.0 38.0 38.0 37.5 38.0 36-37 37.47278720700024 38.0 38.0 38.0 37.0 38.0 38-39 37.45295945968293 38.0 38.0 38.0 37.0 38.0 40-41 37.43212060329708 38.0 38.0 38.0 37.0 38.0 42-43 37.41865678143377 38.0 38.0 38.0 37.0 38.0 44-45 37.38747991776617 38.0 38.0 38.0 37.0 38.0 46-47 37.34994795204834 38.0 38.0 38.0 37.0 38.0 48-49 37.30553770403212 38.0 38.0 38.0 37.0 38.0 50-51 37.28553928076101 38.0 38.0 38.0 37.0 38.0 52-53 37.27415322315747 38.0 38.0 38.0 37.0 38.0 54-55 37.25285064509687 38.0 38.0 38.0 37.0 38.0 56-57 37.22406482031573 38.0 38.0 38.0 37.0 38.0 58-59 37.2275689664378 38.0 38.0 38.0 37.0 38.0 60-61 37.24360197686265 38.0 38.0 38.0 37.0 38.0 62-63 37.25139915857765 38.0 38.0 38.0 37.0 38.0 64-65 37.260728166241414 38.0 38.0 38.0 37.0 38.0 66-67 37.26916924494079 38.0 38.0 38.0 37.0 38.0 68-69 37.27040660446177 38.0 38.0 38.0 37.0 38.0 70-71 37.24115465886949 38.0 38.0 38.0 37.0 38.0 72-73 37.22250514397375 38.0 38.0 38.0 37.0 38.0 74-75 37.208701453714866 38.0 38.0 38.0 37.0 38.0 76-77 37.21134390193522 38.0 38.0 38.0 37.0 38.0 78-79 37.217524358720695 38.0 38.0 38.0 37.0 38.0 80-81 37.20694520050797 38.0 38.0 38.0 37.0 38.0 82-83 37.20812718907919 38.0 38.0 38.0 36.5 38.0 84-85 37.20398297148479 38.0 38.0 38.0 36.5 38.0 86-87 37.17671354560754 38.0 38.0 38.0 36.0 38.0 88-89 37.13822127695043 38.0 38.0 38.0 36.0 38.0 90-91 37.14627487186986 38.0 38.0 38.0 36.0 38.0 92-93 37.12595245290394 38.0 38.0 38.0 36.0 38.0 94-95 37.111118183220626 38.0 38.0 38.0 36.0 38.0 96-97 37.10372533784894 38.0 38.0 38.0 36.0 38.0 98-99 37.14199606966963 38.0 38.0 38.0 36.0 38.0 100 35.551956587588535 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 21.0 20 54.0 21 153.0 22 337.0 23 893.0 24 2010.0 25 3819.0 26 6652.0 27 10889.0 28 17307.0 29 25981.0 30 36719.0 31 49298.0 32 64605.0 33 83536.0 34 123970.0 35 234309.0 36 829285.0 37 4414559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.515374712735564 21.16972706639435 14.256547190291718 24.05835103057837 2 14.119530797609853 21.395067375990426 42.003958740621194 22.48144308577853 3 18.39826990129231 26.140390484863584 30.250086249194037 25.211253364650076 4 12.511561287398573 17.94533672582986 39.05084053375083 30.492261453020735 5 13.223383790674445 38.005426675264516 35.26481846688886 13.506371067172172 6 29.80310609142541 37.962989622312044 18.83856745429424 13.395336831968304 7 26.341155913646137 32.88681345091112 23.145727010842588 17.62630362460015 8 24.09021269215748 37.12826464051736 21.17650525828018 17.60501740904498 9 25.458717072448657 17.14392075607318 21.484682106672278 35.91268006480588 10-11 24.091817580879894 27.069713906723507 28.847802224882006 19.99066628751459 12-13 24.967909541404946 24.565396366067834 29.0761487655907 21.390545326936525 14-15 22.036359984235492 25.83620223755052 26.96005845129474 25.16737932691925 16-17 21.46707296232998 29.005760616272298 27.632446497977863 21.89471992341986 18-19 21.50844039609085 28.07133083564926 29.481126203614487 20.939102564645403 20-21 22.396837315664555 27.202437050029964 29.367848441949974 21.032877192355503 22-23 22.09115760555675 27.099084206586195 29.221905873306493 21.587852314550563 24-25 21.80224945806293 27.154494156497265 29.36566346343098 21.677592922008827 26-27 21.741749066948877 27.34226640054647 29.28939893848363 21.62658559402102 28-29 21.625252250876787 27.469703206053786 29.32819633146015 21.576848211609274 30-31 21.954247107685447 27.27750529441349 29.248833617596198 21.519413980304865 32-33 21.723483557520247 27.442931393585173 29.179479796150343 21.654105252744237 34-35 21.80326964882626 27.440622249017732 29.226767998694996 21.52934010346101 36-37 21.807610862489394 27.34800760085011 29.23521259403185 21.609168942628642 38-39 21.663497206886667 27.456859333664486 29.2774234315048 21.602220027944046 40-41 21.904214125483897 27.36245503086352 29.13409972176518 21.599231121887406 42-43 21.90352153900576 27.37435434614094 28.971830897471946 21.75029321738135 44-45 21.868604819177992 27.51532206662361 28.866481720219927 21.74959139397847 46-47 21.900472986689273 27.499307587501825 28.690212741578353 21.910006684230545 48-49 21.898177065927676 27.572547786959987 28.659309506355534 21.869965640756803 50-51 21.85860626635708 27.7150427469805 28.528261260680882 21.898089725981542 52-53 21.986122620735582 27.628126897496845 28.42195910872135 21.96379137304622 54-55 21.97575047388271 27.57975368545404 28.485835016793676 21.95866082386958 56-57 22.001389368678005 27.662239836372688 28.376021296385005 21.960349498564298 58-59 21.929547690038163 27.683654674556102 28.473390393358187 21.913407242047544 60-61 21.990536618053678 27.641218394443957 28.455134672506293 21.91311031499607 62-63 21.951622368086323 27.70422573004454 28.422586468443868 21.921565433425265 64-65 21.916238217959464 27.646857448177958 28.46803844861442 21.968865885248153 66-67 22.028062944991927 27.70219611503141 28.253988760415993 22.01575217956067 68-69 21.995561708363905 27.66210706120575 28.31774782249486 22.024583407935484 70-71 21.99483048959035 27.478465791447555 28.33033758648606 22.196366132476044 72-73 22.032505440293093 27.498300996715425 28.301464376652362 22.16772918633912 74-75 21.97054178871117 27.638016879378903 28.226562408193555 22.164878923716373 76-77 22.070121365266704 27.53233423648605 28.159084697063513 22.238459701183732 78-79 22.087444643194896 27.621311604073252 28.069739891920648 22.221503860811204 80-81 22.0881967437151 27.65344978599959 28.02267555384383 22.235677916441485 82-83 22.121940863253766 27.65239208124914 28.109605199553073 22.11606185594403 84-85 22.23848800358711 27.638627633862704 28.016419658286175 22.106464704264006 86-87 22.099543262048062 27.649763093866053 28.080718828701922 22.16997481538396 88-89 22.225345049327426 27.633561523798228 28.00229718325429 22.13879624362006 90-91 22.252117182088508 27.635183410612356 28.03444230829407 22.078257099005064 92-93 22.24630293619004 27.648855572703052 28.004202257274834 22.100639233832073 94-95 22.12558916422697 27.7564080056669 27.97694227040499 22.14106055970114 96-97 22.2436856806214 27.825042798918503 28.050186451686898 21.881085068773203 98-99 23.247656053735184 29.790424706743117 28.293012995538568 18.668906243983123 100 22.10777053807931 30.64171226387734 22.25551194550247 24.995005252540874 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1205.0 1 1136.5 2 1561.5 3 2266.0 4 2785.5 5 3552.0 6 4375.5 7 5915.5 8 7864.5 9 9136.0 10 9403.0 11 9414.0 12 10372.0 13 12374.0 14 15984.5 15 19821.0 16 22038.0 17 22674.5 18 21749.0 19 19969.5 20 18458.5 21 17860.0 22 19182.0 23 22837.5 24 29141.0 25 38358.0 26 49900.5 27 62710.5 28 75887.5 29 89910.5 30 103555.0 31 116566.5 32 131004.0 33 145413.5 34 159719.0 35 173355.5 36 186335.0 37 198218.5 38 206551.0 39 213763.5 40 222705.0 41 229991.0 42 233969.0 43 239078.5 44 243215.5 45 246307.0 46 247994.0 47 247346.5 48 246081.0 49 242189.5 50 236528.0 51 228161.0 52 217497.5 53 206043.5 54 193646.5 55 179283.0 56 163164.0 57 146137.5 58 129532.0 59 113363.0 60 96061.0 61 78794.0 62 62616.0 63 48878.0 64 37110.5 65 27193.0 66 19822.0 67 14999.5 68 11312.0 69 8008.0 70 5660.0 71 4023.0 72 2869.5 73 1984.5 74 1317.5 75 894.0 76 552.5 77 323.5 78 212.5 79 124.5 80 68.5 81 50.0 82 41.5 83 33.5 84 21.5 85 11.5 86 4.5 87 2.0 88 2.0 89 2.5 90 3.5 91 4.0 92 3.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.01022965403953626 6 8.468256655245247E-5 7 0.0 8 1.6936513310490493E-5 9 1.6936513310490493E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.436466989393379E-4 26-27 0.0 28-29 7.286394268488379E-4 30-31 0.0024170947115239867 32-33 2.294756744311319E-4 34-35 6.818191309414038E-5 36-37 3.080722371204625E-4 38-39 5.595664995284576E-4 40-41 5.80537036616637E-4 42-43 1.1337958464522961E-4 44-45 0.0 46-47 0.0014012121904396356 48-49 8.052731432817136E-5 50-51 0.001867669903149135 52-53 0.001491152284290729 54-55 0.002703115537663883 56-57 0.0022819938306712535 58-59 0.0035317631307039375 60-61 0.002839009189553123 62-63 0.002815980509243053 64-65 0.004275456469540386 66-67 0.0016607188151041604 68-69 1.0727095189414658E-4 70-71 6.403232430539952E-4 72-73 0.006735857956774497 74-75 0.005764798433421047 76-77 0.004665141706214729 78-79 0.0027253729765130226 80-81 3.105955638877992E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0020706575211188196 90-91 2.289635886837036E-4 92-93 0.0 94-95 1.2261177345000327E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 146.0 22-23 290.0 24-25 405.0 26-27 1399.0 28-29 3839.0 30-31 11870.0 32-33 15200.0 34-35 20833.0 36-37 32907.0 38-39 37893.0 40-41 36736.0 42-43 41825.0 44-45 50122.0 46-47 50589.0 48-49 47541.0 50-51 43414.0 52-53 41741.0 54-55 44747.0 56-57 45473.0 58-59 46976.0 60-61 45630.0 62-63 45666.0 64-65 47886.0 66-67 51096.0 68-69 51684.0 70-71 51133.0 72-73 47120.0 74-75 47847.0 76-77 49569.0 78-79 50616.0 80-81 50430.0 82-83 47635.0 84-85 46833.0 86-87 48588.0 88-89 50131.0 90-91 50036.0 92-93 49594.0 94-95 57174.0 96-97 176876.0 98-99 385811.0 100-101 3879075.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.10785724639499 #Duplication Level Percentage of deduplicated Percentage of total 1 90.05380661846391 77.54340324797153 2 7.063660065067927 12.164732650398603 3 1.6947232299987958 4.377869578826572 4 0.5799377915253565 1.997488022578199 5 0.24900141365973988 1.0720489090781713 6 0.12849885717905354 0.6638856750179304 7 0.07228571853472303 0.43570578327787135 8 0.04248845556412208 0.29268718930681764 9 0.028751964033109374 0.22281930130648187 >10 0.08532233248772525 1.0733611598134587 >50 0.0010041166643931627 0.05946924768561744 >100 4.6054832854775044E-4 0.06009581040323364 >500 5.8888492648830065E-5 0.03643342433550533 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.3873026620980986E-5 0.0 5 0.0 0.0 0.0 3.3873026620980986E-5 0.0 6 0.0 0.0 0.0 3.3873026620980986E-5 0.0 7 0.0 0.0 0.0 5.080953993147148E-5 0.0 8 0.0 1.6936513310490493E-5 0.0 5.080953993147148E-5 0.0 9 0.0 3.3873026620980986E-5 0.0 5.080953993147148E-5 0.0 10-11 0.0 3.3873026620980986E-5 0.0 5.927779658671672E-5 0.0 12-13 0.0 3.3873026620980986E-5 0.0 7.621430989720722E-5 0.0 14-15 0.0 2.2864292969162169E-4 0.0 8.468256655245247E-5 0.0 16-17 0.0 2.540476996573574E-4 0.0 8.468256655245247E-5 0.0 18-19 0.0 2.7098421296784794E-4 0.0 9.315082320769772E-5 0.0 20-21 0.0 2.9638898293358367E-4 0.0 1.3549210648392394E-4 0.0 22-23 0.0 3.2179375289931935E-4 0.0 1.608968764496597E-4 0.0 24-25 0.0 3.4719852286505513E-4 0.0 1.6936513310490493E-4 0.0 26-27 0.0 3.5566677952030034E-4 0.0 1.947699030706407E-4 0.0 28-29 0.0 3.5566677952030034E-4 0.0 3.895398061412814E-4 0.0 30-31 0.0 3.7260329283079086E-4 0.0 0.001405730604770711 0.0 32-33 0.0 3.7260329283079086E-4 0.0 0.004039358424551983 0.0 34-35 0.0 4.149445761070171E-4 0.0 0.007181081643647969 0.0 36-37 0.0 4.572858593832433E-4 0.0 0.012524551593107721 0.0 38-39 0.0 5.250319126252052E-4 0.0 0.02362643606813424 0.0 40-41 0.0 5.927779658671672E-4 0.0 0.03520254291585449 0.0 42-43 0.0 6.097144791776578E-4 0.0 0.04297640252536963 0.0 44-45 0.0 7.113335590406007E-4 0.0 0.05297741363521426 0.0 46-47 0.0 8.298891522140341E-4 0.0 0.06368975830409951 0.0 48-49 0.0 8.383574088692794E-4 0.0 0.07423273783987983 0.0 50-51 0.0 9.738495153532034E-4 0.0 0.08391195519682515 0.0 52-53 0.0 9.823177720084486E-4 0.0 0.10807189143423984 0.0 54-55 0.0 9.907860286636938E-4 0.0 0.13652523379586387 0.0 56-57 0.0 0.0010161907986294297 0.0 0.1803992715266895 0.0 58-59 0.0 0.0010161907986294297 0.0 0.21263792461320813 0.0 60-61 0.0 0.0010161907986294297 0.0 0.22656820681108658 0.0 62-63 0.0 0.0010670003385609011 0.0 0.23711965460352213 0.0 64-65 0.0 0.001168619418423844 0.0 0.24242078326970568 0.0 66-67 0.0 0.001168619418423844 0.0 0.24778118973247593 0.0 68-69 0.0 0.001227897215010561 0.0 0.25304844537203847 0.0 70-71 0.0 0.0012533019849762966 0.0 0.2580531850552884 0.0 72-73 0.0 0.0012533019849762966 0.0 0.2623719959494635 0.0 74-75 0.0 0.0012617702416315418 0.0 0.265496782655249 0.0 76-77 0.0 0.0013464528081839943 0.0 0.2683590534047219 0.0 78-79 0.0 0.0014311353747364468 0.0 0.270298284178773 0.0 80-81 0.0 0.001439603631391692 0.0 0.27086565737467444 0.0 82-83 0.0 0.001439603631391692 0.0 0.2714669035971969 0.0 84-85 0.0 0.0014565401447021824 0.0 0.27162780047364654 0.0 86-87 0.0 0.0014904131713231634 0.0 0.2717378878101647 0.0 88 0.0 0.0016089687644965968 0.0 0.27174635606681996 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7355 0.0 48.82659 1 GTATCAA 14230 0.0 38.814312 1 ATCAACG 17000 0.0 32.08844 3 TCAACGC 17055 0.0 32.009968 4 CAACGCA 17460 0.0 31.267467 5 TATCAAC 17635 0.0 31.19904 2 AACGCAG 18165 0.0 30.051659 6 ACGCAGA 20955 0.0 26.07086 7 CGCAGAG 21355 0.0 25.602499 8 TGGTATC 3405 0.0 22.797188 2 GTGGTAT 3825 0.0 22.078053 1 GCAGAGT 25135 0.0 21.650389 9 GTACATG 19640 0.0 20.065847 1 TACATGG 19305 0.0 19.99428 2 GAGTACT 14065 0.0 19.496881 12-13 ACATGGG 19815 0.0 18.941551 3 AGAGTAC 22690 0.0 18.852125 10-11 CAGAGTA 24530 0.0 18.446404 10-11 TATACCG 365 2.910383E-11 17.527718 5 GTACTTT 15920 0.0 17.225176 14-15 >>END_MODULE